RNA–Protein interactions for RNA: ENST00000376656.8

TRIM39-201, Transcript of tripartite motif containing 39, humanhuman

APPRIS P4 TSL 2 BASIC

Gene TRIM39, Length 3,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-201ENST00000376656 GTF2A1P52655 376 aaPredicted RBP18.64■□□□□ 0.58
TRIM39-201ENST00000376656 COPB1P53618 953 aaKnown RBP18.64■□□□□ 0.58
TRIM39-201ENST00000376656 BLZF1Q9H2G9 400 aa18.64■□□□□ 0.58
TRIM39-201ENST00000376656 NID2Q14112 1375 aa18.64■□□□□ 0.57
TRIM39-201ENST00000376656 CHD4Q14839 1912 aa18.64■□□□□ 0.57
TRIM39-201ENST00000376656 ZC3H4Q9UPT8 1303 aaKnown RBP18.64■□□□□ 0.57
TRIM39-201ENST00000376656 SRGAP2O75044 1071 aa18.64■□□□□ 0.57
TRIM39-201ENST00000376656 CSF1RP07333 972 aa18.64■□□□□ 0.57
TRIM39-201ENST00000376656 TCIRG1Q13488 830 aa18.64■□□□□ 0.57
TRIM39-201ENST00000376656 WTAPQ15007 396 aa18.64■□□□□ 0.57
TRIM39-201ENST00000376656 ALX1Q15699 326 aa18.64■□□□□ 0.57
TRIM39-201ENST00000376656 AKNAD1Q5T1N1 836 aa18.64■□□□□ 0.57
TRIM39-201ENST00000376656 PATL2C9JE40 543 aaKnown RBP18.64■□□□□ 0.57
TRIM39-201ENST00000376656 ANKLE2Q86XL3 938 aa18.64■□□□□ 0.57
TRIM39-201ENST00000376656 ZMYND10O75800 440 aa18.63■□□□□ 0.57
TRIM39-201ENST00000376656 MBD4O95243 580 aa18.63■□□□□ 0.57
TRIM39-201ENST00000376656 ARMT1Q9H993 441 aa18.63■□□□□ 0.57
TRIM39-201ENST00000376656 JRKLQ9Y4A0 524 aa18.63■□□□□ 0.57
TRIM39-201ENST00000376656 EPN1Q9Y6I3 576 aaPredicted RBP18.63■□□□□ 0.57
TRIM39-201ENST00000376656 NDUFA10O95299 355 aa18.63■□□□□ 0.57
TRIM39-201ENST00000376656 ATP1A1P05023 1023 aaKnown RBP18.63■□□□□ 0.57
TRIM39-201ENST00000376656 MFSD6Q6ZSS7 791 aa18.63■□□□□ 0.57
TRIM39-201ENST00000376656 GSPT2Q8IYD1 628 aaKnown RBP18.63■□□□□ 0.57
TRIM39-201ENST00000376656 TTLL11Q8NHH1 800 aa18.63■□□□□ 0.57
TRIM39-201ENST00000376656 PPM1EQ8WY54 764 aa18.63■□□□□ 0.57
TRIM39-201ENST00000376656 IRX3P78415 501 aaPredicted RBP18.62■□□□□ 0.57
TRIM39-201ENST00000376656 RRAGBQ5VZM2 374 aa18.62■□□□□ 0.57
TRIM39-201ENST00000376656 CTCFLQ8NI51 663 aaPredicted RBP18.62■□□□□ 0.57
TRIM39-201ENST00000376656 VPS54Q9P1Q0 977 aa18.62■□□□□ 0.57
TRIM39-201ENST00000376656 BCL9LQ86UU0 1499 aa18.62■□□□□ 0.57
TRIM39-201ENST00000376656 LRRC10BA6NIK2 292 aa18.62■□□□□ 0.57
TRIM39-201ENST00000376656 PRKAB2O43741 272 aa18.62■□□□□ 0.57
TRIM39-201ENST00000376656 CAPZA3Q96KX2 299 aa18.62■□□□□ 0.57
TRIM39-201ENST00000376656 CNNM2Q9H8M5 875 aa18.62■□□□□ 0.57
TRIM39-201ENST00000376656 XDHP47989 1333 aa18.62■□□□□ 0.57
TRIM39-201ENST00000376656 hCG_1642624A0A1W2PR95 340 aa18.62■□□□□ 0.57
TRIM39-201ENST00000376656 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.62■□□□□ 0.57
TRIM39-201ENST00000376656 CABLES1Q8TDN4 633 aa18.62■□□□□ 0.57
TRIM39-201ENST00000376656 ZNF512BQ96KM6 892 aaPredicted RBP18.62■□□□□ 0.57
TRIM39-201ENST00000376656 KRT23Q9C075 422 aa18.62■□□□□ 0.57
TRIM39-201ENST00000376656 GREM2Q9H772 168 aa18.62■□□□□ 0.57
TRIM39-201ENST00000376656 CNNM1Q9NRU3 951 aa18.62■□□□□ 0.57
TRIM39-201ENST00000376656 PCCAP05165 728 aaPredicted RBP18.61■□□□□ 0.57
TRIM39-201ENST00000376656 ITGA6P23229 1130 aa18.61■□□□□ 0.57
TRIM39-201ENST00000376656 FANCBQ8NB91 859 aa18.61■□□□□ 0.57
TRIM39-201ENST00000376656 PSMD14O00487 310 aa18.61■□□□□ 0.57
TRIM39-201ENST00000376656 STIM1Q13586 685 aa18.61■□□□□ 0.57
TRIM39-201ENST00000376656 TCP11X2Q5H9J9 407 aa18.61■□□□□ 0.57
TRIM39-201ENST00000376656 COG1Q8WTW3 980 aa18.61■□□□□ 0.57
TRIM39-201ENST00000376656 CDHR2Q9BYE9 1310 aa18.61■□□□□ 0.57
TRIM39-201ENST00000376656 GSG1L2A8MUP6 293 aa18.61■□□□□ 0.57
TRIM39-201ENST00000376656 KCNJ18B7U540 433 aa18.61■□□□□ 0.57
TRIM39-201ENST00000376656 PRDM1O75626 825 aa18.61■□□□□ 0.57
TRIM39-201ENST00000376656 GGCXP38435 758 aa18.61■□□□□ 0.57
TRIM39-201ENST00000376656 KCNJ12Q14500 433 aa18.61■□□□□ 0.57
TRIM39-201ENST00000376656 ZNF654Q8IZM8 581 aa18.61■□□□□ 0.57
TRIM39-201ENST00000376656 MAGEB6Q8N7X4 407 aa18.61■□□□□ 0.57
TRIM39-201ENST00000376656 MYBL2P10244 700 aa18.6■□□□□ 0.57
TRIM39-201ENST00000376656 ZNF174Q15697 407 aa18.6■□□□□ 0.57
TRIM39-201ENST00000376656 PAXIP1Q6ZW49 1069 aaPredicted RBP18.6■□□□□ 0.57
TRIM39-201ENST00000376656 VGLL2Q8N8G2 317 aa18.6■□□□□ 0.57
TRIM39-201ENST00000376656 SMARCC1Q92922 1105 aaPredicted RBP18.6■□□□□ 0.57
TRIM39-201ENST00000376656 PLA2G12BQ9BX93 195 aa18.6■□□□□ 0.57
TRIM39-201ENST00000376656 MYH6P13533 1939 aa18.6■□□□□ 0.57
TRIM39-201ENST00000376656 HERVK_113P62684 666 aa18.6■□□□□ 0.57
TRIM39-201ENST00000376656 UBXN1Q04323 297 aa18.6■□□□□ 0.57
TRIM39-201ENST00000376656 TRIM14Q14142 442 aa18.6■□□□□ 0.57
TRIM39-201ENST00000376656 SART3Q15020 963 aaKnown RBP18.6■□□□□ 0.57
TRIM39-201ENST00000376656 MAP9Q49MG5 647 aa18.6■□□□□ 0.57
TRIM39-201ENST00000376656 DNAJC21Q5F1R6 531 aaKnown RBP18.6■□□□□ 0.57
TRIM39-201ENST00000376656 MAPK8IP1Q9UQF2 711 aa18.6■□□□□ 0.57
TRIM39-201ENST00000376656 SAR1BQ9Y6B6 198 aa18.6■□□□□ 0.57
TRIM39-201ENST00000376656 TTC26A0AVF1 554 aa18.59■□□□□ 0.57
TRIM39-201ENST00000376656 RWDD2AQ9UIY3 292 aa18.59■□□□□ 0.57
TRIM39-201ENST00000376656 CCDC196A0A1B0GTZ2 297 aa18.59■□□□□ 0.57
TRIM39-201ENST00000376656 ERICH2A1L162 156 aa18.59■□□□□ 0.57
TRIM39-201ENST00000376656 PAK1Q13153 545 aa18.59■□□□□ 0.57
TRIM39-201ENST00000376656 NELFBQ8WX92 580 aa18.59■□□□□ 0.57
TRIM39-201ENST00000376656 DDX17Q92841 729 aaKnown RBP18.59■□□□□ 0.57
TRIM39-201ENST00000376656 KCPQ6ZWJ8 1503 aa18.59■□□□□ 0.57
TRIM39-201ENST00000376656 COL18A1P39060 1754 aa18.59■□□□□ 0.57
TRIM39-201ENST00000376656 AGPSO00116 658 aa18.59■□□□□ 0.57
TRIM39-201ENST00000376656 EFCAB13Q8IY85 973 aa18.59■□□□□ 0.57
TRIM39-201ENST00000376656 ZBTB38Q8NAP3 1195 aaPredicted RBP18.59■□□□□ 0.57
TRIM39-201ENST00000376656 MTRQ99707 1265 aa18.59■□□□□ 0.57
TRIM39-201ENST00000376656 HAUS4Q9H6D7 363 aa18.59■□□□□ 0.57
TRIM39-201ENST00000376656 ARID4AP29374 1257 aaPredicted RBP18.58■□□□□ 0.57
TRIM39-201ENST00000376656 SPAG1Q07617 926 aa18.58■□□□□ 0.57
TRIM39-201ENST00000376656 CCDC122Q5T0U0 273 aa18.58■□□□□ 0.57
TRIM39-201ENST00000376656 FERMT2Q96AC1 680 aa18.58■□□□□ 0.57
TRIM39-201ENST00000376656 KRT2P35908 639 aa18.58■□□□□ 0.56
TRIM39-201ENST00000376656 TDO2P48775 406 aa18.58■□□□□ 0.56
TRIM39-201ENST00000376656 PKN1Q16512 942 aa18.58■□□□□ 0.56
TRIM39-201ENST00000376656 STAG1Q8WVM7 1258 aa18.58■□□□□ 0.56
TRIM39-201ENST00000376656 DRC1Q96MC2 740 aa18.58■□□□□ 0.56
TRIM39-201ENST00000376656 MCM3P25205 808 aa18.57■□□□□ 0.56
TRIM39-201ENST00000376656 E2F4Q16254 413 aa18.57■□□□□ 0.56
TRIM39-201ENST00000376656 PAPD7Q5XG87 772 aaKnown RBP18.57■□□□□ 0.56
TRIM39-201ENST00000376656 HINFPQ9BQA5 517 aa18.57■□□□□ 0.56
TRIM39-201ENST00000376656 UBR2Q8IWV8 1755 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms