RNA–Protein interactions for RNA: ENST00000372276.7

CD40-201, Transcript of CD40 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD40, Length 1,623 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD40-201ENST00000372276 ARMCX5Q6P1M9 558 aa20.6■□□□□ 0.89
CD40-201ENST00000372276 SH3RF1Q7Z6J0 888 aa20.6■□□□□ 0.89
CD40-201ENST00000372276 SLF2Q8IX21 1173 aa20.6■□□□□ 0.89
CD40-201ENST00000372276 ANKRD7Q92527 254 aa20.6■□□□□ 0.89
CD40-201ENST00000372276 FANCLQ9NW38 375 aa20.6■□□□□ 0.89
CD40-201ENST00000372276 ANKIB1Q9P2G1 1089 aa20.6■□□□□ 0.89
CD40-201ENST00000372276 GOLGA6L9A6NEM1 432 aa20.59■□□□□ 0.89
CD40-201ENST00000372276 CDK11BP21127 795 aaKnown RBP20.59■□□□□ 0.89
CD40-201ENST00000372276 ISM2Q6H9L7 571 aa20.59■□□□□ 0.89
CD40-201ENST00000372276 SRBD1Q8N5C6 995 aaKnown RBP20.59■□□□□ 0.89
CD40-201ENST00000372276 IQUBQ8NA54 791 aa20.59■□□□□ 0.89
CD40-201ENST00000372276 ZSCAN12O43309 604 aa20.58■□□□□ 0.89
CD40-201ENST00000372276 ZNF18P17022 549 aa20.58■□□□□ 0.89
CD40-201ENST00000372276 ATP2B4P23634 1241 aa20.58■□□□□ 0.89
CD40-201ENST00000372276 FAM196AQ6ZSG2 479 aa20.58■□□□□ 0.89
CD40-201ENST00000372276 CNBD1Q8NA66 436 aa20.58■□□□□ 0.89
CD40-201ENST00000372276 CCDC148Q8NFR7 591 aa20.58■□□□□ 0.89
CD40-201ENST00000372276 CTAGE1Q96RT6 745 aa20.58■□□□□ 0.89
CD40-201ENST00000372276 TMX1Q9H3N1 280 aa20.58■□□□□ 0.89
CD40-201ENST00000372276 MKRN1Q9UHC7 482 aaKnown RBP20.58■□□□□ 0.89
CD40-201ENST00000372276 WTIPA6NIX2 430 aaPredicted RBP20.57■□□□□ 0.88
CD40-201ENST00000372276 ATP2B1P20020 1258 aa20.57■□□□□ 0.88
CD40-201ENST00000372276 KLRK1P26718 216 aa20.57■□□□□ 0.88
CD40-201ENST00000372276 FAM182BQ5T319 152 aa20.57■□□□□ 0.88
CD40-201ENST00000372276 PDCL2Q8N4E4 241 aa20.57■□□□□ 0.88
CD40-201ENST00000372276 UPF1Q92900 1129 aaKnown RBP eCLIP20.57■□□□□ 0.88
CD40-201ENST00000372276 CCDC94Q9BW85 323 aaPredicted RBP20.57■□□□□ 0.88
CD40-201ENST00000372276 ATP1A3P13637 1013 aa20.56■□□□□ 0.88
CD40-201ENST00000372276 LONP1P36776 959 aaKnown RBP20.56■□□□□ 0.88
CD40-201ENST00000372276 TXLNAP40222 546 aa20.56■□□□□ 0.88
CD40-201ENST00000372276 GRM4Q14833 912 aa20.56■□□□□ 0.88
CD40-201ENST00000372276 SPECC1Q5M775 1068 aa20.56■□□□□ 0.88
CD40-201ENST00000372276 ZNF444Q8N0Y2 327 aaPredicted RBP20.56■□□□□ 0.88
CD40-201ENST00000372276 MKNK2Q9HBH9 465 aa20.56■□□□□ 0.88
CD40-201ENST00000372276 NFE2L3Q9Y4A8 694 aa20.56■□□□□ 0.88
CD40-201ENST00000372276 ARHGAP6O43182 974 aa20.56■□□□□ 0.88
CD40-201ENST00000372276 BMP6P22004 513 aa20.56■□□□□ 0.88
CD40-201ENST00000372276 TFAP4Q01664 338 aa20.56■□□□□ 0.88
CD40-201ENST00000372276 GRIN1Q05586 938 aa20.56■□□□□ 0.88
CD40-201ENST00000372276 SPATA1Q5VX52 437 aa20.56■□□□□ 0.88
CD40-201ENST00000372276 DAGLBQ8NCG7 672 aa20.56■□□□□ 0.88
CD40-201ENST00000372276 RMND1Q9NWS8 449 aa20.56■□□□□ 0.88
CD40-201ENST00000372276 LAD1O00515 517 aa20.55■□□□□ 0.88
CD40-201ENST00000372276 SMARCA1P28370 1054 aa20.55■□□□□ 0.88
CD40-201ENST00000372276 NPY5RQ15761 445 aa20.55■□□□□ 0.88
CD40-201ENST00000372276 FAM47AQ5JRC9 791 aa20.55■□□□□ 0.88
CD40-201ENST00000372276 E4F1Q66K89 784 aaPredicted RBP20.55■□□□□ 0.88
CD40-201ENST00000372276 SPECC1LQ69YQ0 1117 aa20.55■□□□□ 0.88
CD40-201ENST00000372276 RCSD1Q6JBY9 416 aa20.55■□□□□ 0.88
CD40-201ENST00000372276 TMC4Q7Z404 712 aa20.55■□□□□ 0.88
CD40-201ENST00000372276 SYMPKQ92797 1274 aaKnown RBP20.55■□□□□ 0.88
CD40-201ENST00000372276 RPGRQ92834 1020 aaKnown RBP20.55■□□□□ 0.88
CD40-201ENST00000372276 DHX58Q96C10 678 aa20.55■□□□□ 0.88
CD40-201ENST00000372276 PAGE5Q96GU1 130 aa20.55■□□□□ 0.88
CD40-201ENST00000372276 CGNQ9P2M7 1197 aaKnown RBP20.55■□□□□ 0.88
CD40-201ENST00000372276 KCNQ4P56696 695 aa20.54■□□□□ 0.88
CD40-201ENST00000372276 PTGDRQ13258 359 aa20.54■□□□□ 0.88
CD40-201ENST00000372276 BLIDQ8IZY5 108 aa20.54■□□□□ 0.88
CD40-201ENST00000372276 ZNF710Q8N1W2 664 aa20.54■□□□□ 0.88
CD40-201ENST00000372276 PNMA1Q8ND90 353 aa20.54■□□□□ 0.88
CD40-201ENST00000372276 TBC1D22AQ8WUA7 517 aa20.54■□□□□ 0.88
CD40-201ENST00000372276 CCDC12Q8WUD4 166 aaPredicted RBP20.54■□□□□ 0.88
CD40-201ENST00000372276 ERO1AQ96HE7 468 aa20.54■□□□□ 0.88
CD40-201ENST00000372276 RBM17Q96I25 401 aaKnown RBP20.54■□□□□ 0.88
CD40-201ENST00000372276 PPP1R13BQ96KQ4 1090 aa20.54■□□□□ 0.88
CD40-201ENST00000372276 GTPBP4Q9BZE4 634 aaKnown RBP20.54■□□□□ 0.88
CD40-201ENST00000372276 PCDHA4Q9UN74 947 aa20.54■□□□□ 0.88
CD40-201ENST00000372276 FOXN1O15353 648 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 STX10O60499 249 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 BBOX1O75936 387 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 MYL1P05976 194 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 ST5P78524 1137 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 DPYDQ12882 1025 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 TBX2Q13207 712 aaPredicted RBP20.53■□□□□ 0.88
CD40-201ENST00000372276 ZNF174Q15697 407 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 FILIP1LQ4L180 1135 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 CCDC125Q86Z20 511 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 PDILTQ8N807 584 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 ZNF592Q92610 1267 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 SHISA4Q96DD7 197 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 FAM163AQ96GL9 167 aaPredicted RBP20.53■□□□□ 0.88
CD40-201ENST00000372276 PRR29P0C7W0 189 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 TSPY3P0CV98 308 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 TSPY8P0CW00 308 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 NFIXQ14938 502 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 UBE2Q2Q8WVN8 375 aa20.53■□□□□ 0.88
CD40-201ENST00000372276 TRMT1Q9NXH9 659 aaKnown RBP20.53■□□□□ 0.88
CD40-201ENST00000372276 PHLPP2Q6ZVD8 1323 aa20.52■□□□□ 0.88
CD40-201ENST00000372276 USP27XA6NNY8 438 aa20.52■□□□□ 0.88
CD40-201ENST00000372276 GTPBP6O43824 516 aaPredicted RBP20.52■□□□□ 0.88
CD40-201ENST00000372276 CYP2D6P10635 497 aa20.52■□□□□ 0.88
CD40-201ENST00000372276 IL1R1P14778 569 aa20.52■□□□□ 0.88
CD40-201ENST00000372276 SPAG1Q07617 926 aa20.52■□□□□ 0.88
CD40-201ENST00000372276 CRY2Q49AN0 593 aa20.52■□□□□ 0.88
CD40-201ENST00000372276 TXNRD3Q86VQ6 643 aa20.52■□□□□ 0.88
CD40-201ENST00000372276 FEZ1Q99689 392 aa20.52■□□□□ 0.88
CD40-201ENST00000372276 SRRTQ9BXP5 876 aaKnown RBP20.52■□□□□ 0.88
CD40-201ENST00000372276 SMIM22K7EJ46 135 aa20.51■□□□□ 0.87
CD40-201ENST00000372276 SLU7O95391 586 aaKnown RBP20.51■□□□□ 0.87
CD40-201ENST00000372276 USP17L8P0C7I0 530 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms