RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 FSD2A1L4K1 749 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 SMARCA5O60264 1052 aaPredicted RBP2.9□□□□□ -1.95
VPS54-202ENST00000354504 F11P03951 625 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 BMP2P12643 396 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 SDSP20132 328 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 MZF1P28698 734 aaPredicted RBP2.9□□□□□ -1.95
VPS54-202ENST00000354504 SFSWAPQ12872 951 aaKnown RBP2.9□□□□□ -1.95
VPS54-202ENST00000354504 GAS6Q14393 721 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 HIF1AQ16665 826 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 ZNF790Q6PG37 636 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 SLCO4C1Q6ZQN7 724 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 GOLGA6L1Q8N7Z2 621 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 TMEM87AQ8NBN3 555 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 CARD10Q9BWT7 1032 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 COL25A1Q9BXS0 654 aaPredicted RBP2.9□□□□□ -1.95
VPS54-202ENST00000354504 NIFKQ9BYG3 293 aaKnown RBP2.9□□□□□ -1.95
VPS54-202ENST00000354504 PNNQ9H307 717 aaKnown RBP2.9□□□□□ -1.95
VPS54-202ENST00000354504 PALD1Q9ULE6 856 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 USP16Q9Y5T5 823 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 COL4A5P29400 1685 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 PTPRFP10586 1907 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 GPR25O00155 361 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 NDUFB5O43674 189 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 RPLP1P05386 114 aaKnown RBP2.9□□□□□ -1.95
VPS54-202ENST00000354504 BRD2P25440 801 aaKnown RBP2.9□□□□□ -1.95
VPS54-202ENST00000354504 FIGNL1Q6PIW4 674 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 MPRIPQ6WCQ1 1025 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 TMC4Q7Z404 712 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 TTC9Q92623 222 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 ZNF496Q96IT1 587 aaPredicted RBP2.9□□□□□ -1.95
VPS54-202ENST00000354504 SALL4Q9UJQ4 1053 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 DOCK5Q9H7D0 1870 aa2.9□□□□□ -1.95
VPS54-202ENST00000354504 REV3LO60673 3130 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 NEURL1BA8MQ27 555 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 ADARB2-AS1A8MUL3 147 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 ELL2O00472 640 aaPredicted RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 HOXD8P13378 290 aaPredicted RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 PDE1AP54750 535 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 PLAURQ03405 335 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 LMOD3Q0VAK6 560 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 NAALADL2Q58DX5 795 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 LINC00114Q6XXX2 140 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 CMTR1Q8N1G2 835 aaKnown RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 CACTIN-AS1Q8N1I8 211 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 PIK3R5Q8WYR1 880 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 FRAT1Q92837 279 aaPredicted RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 VTI1AQ96AJ9 217 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 SUCLG2Q96I99 432 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 NLRP3Q96P20 1036 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 LSG1Q9H089 658 aaKnown RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 TLR7Q9NYK1 1049 aaKnown RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 PPP1R1BQ9UD71 204 aaPredicted RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 ATXN7L1Q9ULK2 861 aaPredicted RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 OTOFQ9HC10 1997 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 ZNFX1Q9P2E3 1918 aaKnown RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 SIP14410 1827 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 SPATA31A1Q5TZJ5 1347 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 UBN2Q6ZU65 1347 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 A0A1B0GTH6 734 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 PRPF40AO75400 957 aaKnown RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 SASH3O75995 380 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 NEFLP07196 543 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 MSX1P28360 303 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 KCNQ4P56696 695 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 PTPN12Q05209 780 aaKnown RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 PTF1AQ7RTS3 328 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 RPAP2Q8IXW5 612 aaPredicted RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 NGDNQ8NEJ9 315 aaKnown RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 DNAJC2Q99543 621 aaKnown RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 SLC30A3Q99726 388 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 ISCA1Q9BUE6 129 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 ESF1Q9H501 851 aaKnown RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 SRA1Q9HD15 236 aaKnown RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 SPTBN5Q9NRC6 3674 aaKnown RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 SMCHD1A6NHR9 2005 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 A0A1W2PNR3 127 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 TGFBR3LH3BV60 316 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 ANXA1P04083 346 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 PLCB3Q01970 1234 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 CUL4AQ13619 759 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 PKP1Q13835 747 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 AMOTQ4VCS5 1084 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 ARSJQ5FYB0 599 aaPredicted RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 INTS5Q6P9B9 1019 aaKnown RBP2.89□□□□□ -1.95
VPS54-202ENST00000354504 C3orf58Q8NDZ4 430 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 RHPN1Q8TCX5 695 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 CCDC74AQ96AQ1 378 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 DMRTB1Q96MA1 342 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 CSRNP1Q96S65 589 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 ATG3Q9NT62 314 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 TLR6Q9Y2C9 796 aa2.89□□□□□ -1.95
VPS54-202ENST00000354504 RFX7Q2KHR2 1363 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 MGAMO43451 1857 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 SPATA31A5Q5VU36 1347 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 SPATA31A7Q8IWB4 1347 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 CSF1RP07333 972 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 ERCC5P28715 1186 aaPredicted RBP2.88□□□□□ -1.95
VPS54-202ENST00000354504 DBN1Q16643 649 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 ITPRIPQ8IWB1 547 aa2.88□□□□□ -1.95
VPS54-202ENST00000354504 ZSCAN29Q8IWY8 852 aaPredicted RBP2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms