RNA–Protein interactions for RNA: ENST00000316763.7

VRK3-201, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 1,938 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-201ENST00000316763 WTAPQ15007 396 aa16.31■□□□□ 0.2
VRK3-201ENST00000316763 MAPKAPK5Q8IW41 473 aa16.31■□□□□ 0.2
VRK3-201ENST00000316763 CCDC144CPQ8IYA2 1237 aa16.31■□□□□ 0.2
VRK3-201ENST00000316763 C17orf53Q8N3J3 647 aaPredicted RBP16.31■□□□□ 0.2
VRK3-201ENST00000316763 ESR2Q92731 530 aa16.31■□□□□ 0.2
VRK3-201ENST00000316763 SENP2Q9HC62 589 aa16.31■□□□□ 0.2
VRK3-201ENST00000316763 NID2Q14112 1375 aa16.31■□□□□ 0.2
VRK3-201ENST00000316763 ADAMTSL1Q8N6G6 1762 aa16.3■□□□□ 0.2
VRK3-201ENST00000316763 CCDC196A0A1B0GTZ2 297 aa16.3■□□□□ 0.2
VRK3-201ENST00000316763 SHTN1A0MZ66 631 aa16.3■□□□□ 0.2
VRK3-201ENST00000316763 NEMFO60524 1076 aa16.3■□□□□ 0.2
VRK3-201ENST00000316763 ZNF202O95125 648 aa16.3■□□□□ 0.2
VRK3-201ENST00000316763 FMNL1O95466 1100 aaPredicted RBP16.3■□□□□ 0.2
VRK3-201ENST00000316763 SLC3A2P08195 630 aaKnown RBP16.3■□□□□ 0.2
VRK3-201ENST00000316763 IFNAR1P17181 557 aa16.3■□□□□ 0.2
VRK3-201ENST00000316763 SAFBQ15424 915 aaKnown RBP eCLIP16.3■□□□□ 0.2
VRK3-201ENST00000316763 RRP12Q5JTH9 1297 aaKnown RBP16.3■□□□□ 0.2
VRK3-201ENST00000316763 AXDND1Q5T1B0 1012 aaPredicted RBP16.3■□□□□ 0.2
VRK3-201ENST00000316763 DHX40Q8IX18 779 aaKnown RBP16.3■□□□□ 0.2
VRK3-201ENST00000316763 TRIM22Q8IYM9 498 aa16.3■□□□□ 0.2
VRK3-201ENST00000316763 MYRIPQ8NFW9 859 aa16.3■□□□□ 0.2
VRK3-201ENST00000316763 DPF2Q92785 391 aa16.3■□□□□ 0.2
VRK3-201ENST00000316763 TIGD1Q96MW7 591 aa16.3■□□□□ 0.2
VRK3-201ENST00000316763 AIFM3Q96NN9 605 aa16.3■□□□□ 0.2
VRK3-201ENST00000316763 SLC26A6Q9BXS9 759 aa16.3■□□□□ 0.2
VRK3-201ENST00000316763 GLTPD2A6NH11 291 aa16.29■□□□□ 0.2
VRK3-201ENST00000316763 WDHD1O75717 1129 aaPredicted RBP16.29■□□□□ 0.2
VRK3-201ENST00000316763 U2AF2P26368 475 aaKnown RBP eCLIP16.29■□□□□ 0.2
VRK3-201ENST00000316763 NT5C2P49902 561 aa16.29■□□□□ 0.2
VRK3-201ENST00000316763 RCAN1P53805 252 aa16.29■□□□□ 0.2
VRK3-201ENST00000316763 CDC42EP5Q6NZY7 148 aa16.29■□□□□ 0.2
VRK3-201ENST00000316763 STK11IPQ8N1F8 1099 aa16.29■□□□□ 0.2
VRK3-201ENST00000316763 BPIFA3Q9BQP9 254 aa16.29■□□□□ 0.2
VRK3-201ENST00000316763 FAM217BQ9NTX9 383 aaPredicted RBP16.29■□□□□ 0.2
VRK3-201ENST00000316763 CNOT7Q9UIV1 285 aaKnown RBP16.29■□□□□ 0.2
VRK3-201ENST00000316763 DDX60LQ5H9U9 1706 aaKnown RBP16.29■□□□□ 0.2
VRK3-201ENST00000316763 LAMB1P07942 1786 aa16.29■□□□□ 0.2
VRK3-201ENST00000316763 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.29■□□□□ 0.2
VRK3-201ENST00000316763 PFKFB1P16118 471 aa16.29■□□□□ 0.2
VRK3-201ENST00000316763 TPM4P67936 248 aa16.29■□□□□ 0.2
VRK3-201ENST00000316763 RTN1Q16799 776 aa16.29■□□□□ 0.2
VRK3-201ENST00000316763 AMOTL1Q8IY63 956 aa16.29■□□□□ 0.2
VRK3-201ENST00000316763 OGFOD1Q8N543 542 aa16.29■□□□□ 0.2
VRK3-201ENST00000316763 MAP7D2Q96T17 732 aa16.29■□□□□ 0.2
VRK3-201ENST00000316763 MYL10Q9BUA6 226 aa16.29■□□□□ 0.2
VRK3-201ENST00000316763 USP40Q9NVE5 1235 aa16.29■□□□□ 0.2
VRK3-201ENST00000316763 RANBP6O60518 1105 aaKnown RBP16.28■□□□□ 0.2
VRK3-201ENST00000316763 PLCD1P51178 756 aa16.28■□□□□ 0.2
VRK3-201ENST00000316763 PDE4BQ07343 736 aa16.28■□□□□ 0.2
VRK3-201ENST00000316763 AOPEPQ8N6M6 819 aa16.28■□□□□ 0.2
VRK3-201ENST00000316763 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.28■□□□□ 0.2
VRK3-201ENST00000316763 NRBP1Q9UHY1 535 aa16.28■□□□□ 0.2
VRK3-201ENST00000316763 HDAC9Q9UKV0 1011 aa16.28■□□□□ 0.2
VRK3-201ENST00000316763 PCDHAC2Q9Y5I4 1007 aa16.28■□□□□ 0.2
VRK3-201ENST00000316763 CDK5RAP2Q96SN8 1893 aa16.28■□□□□ 0.2
VRK3-201ENST00000316763 PRDM1O75626 825 aa16.27■□□□□ 0.2
VRK3-201ENST00000316763 MARCKSP29966 332 aaPredicted RBP16.27■□□□□ 0.2
VRK3-201ENST00000316763 SYKP43405 635 aa16.27■□□□□ 0.2
VRK3-201ENST00000316763 NLRP12P59046 1061 aa16.27■□□□□ 0.2
VRK3-201ENST00000316763 MICALL2Q8IY33 904 aa16.27■□□□□ 0.2
VRK3-201ENST00000316763 UBAC1Q9BSL1 405 aa16.27■□□□□ 0.2
VRK3-201ENST00000316763 DDX4Q9NQI0 724 aaKnown RBP16.27■□□□□ 0.2
VRK3-201ENST00000316763 GPRC5DQ9NZD1 345 aa16.27■□□□□ 0.2
VRK3-201ENST00000316763 NAV1Q8NEY1 1877 aa16.27■□□□□ 0.2
VRK3-201ENST00000316763 SMTNL1A8MU46 457 aa16.27■□□□□ 0.19
VRK3-201ENST00000316763 CUTAO60888 179 aa16.27■□□□□ 0.19
VRK3-201ENST00000316763 RBM5P52756 815 aaKnown RBP eCLIP16.27■□□□□ 0.19
VRK3-201ENST00000316763 ZNF280AP59817 542 aaPredicted RBP16.27■□□□□ 0.19
VRK3-201ENST00000316763 PPP2R5BQ15173 497 aa16.27■□□□□ 0.19
VRK3-201ENST00000316763 SEC23AQ15436 765 aa16.27■□□□□ 0.19
VRK3-201ENST00000316763 SAP30BPQ9UHR5 308 aaKnown RBP16.27■□□□□ 0.19
VRK3-201ENST00000316763 EPS15P42566 896 aa16.26■□□□□ 0.19
VRK3-201ENST00000316763 PTPAQ15257 358 aa16.26■□□□□ 0.19
VRK3-201ENST00000316763 CFAP100Q494V2 611 aa16.26■□□□□ 0.19
VRK3-201ENST00000316763 MTERF4Q7Z6M4 381 aaKnown RBP16.26■□□□□ 0.19
VRK3-201ENST00000316763 DYNLL2Q96FJ2 89 aa16.26■□□□□ 0.19
VRK3-201ENST00000316763 PDCL3Q9H2J4 239 aa16.26■□□□□ 0.19
VRK3-201ENST00000316763 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.26■□□□□ 0.19
VRK3-201ENST00000316763 FOCADQ5VW36 1801 aa16.26■□□□□ 0.19
VRK3-201ENST00000316763 H7C1D1 291 aa16.25■□□□□ 0.19
VRK3-201ENST00000316763 NPM3O75607 178 aaKnown RBP16.25■□□□□ 0.19
VRK3-201ENST00000316763 DEXIO95424 95 aa16.25■□□□□ 0.19
VRK3-201ENST00000316763 MMP14P50281 582 aa16.25■□□□□ 0.19
VRK3-201ENST00000316763 SLC4A8Q2Y0W8 1093 aa16.25■□□□□ 0.19
VRK3-201ENST00000316763 C16orf86Q6ZW13 317 aa16.25■□□□□ 0.19
VRK3-201ENST00000316763 ERCC4Q92889 916 aaPredicted RBP16.25■□□□□ 0.19
VRK3-201ENST00000316763 L3MBTL3Q96JM7 780 aaPredicted RBP16.25■□□□□ 0.19
VRK3-201ENST00000316763 ZSCAN10Q96SZ4 725 aaPredicted RBP16.25■□□□□ 0.19
VRK3-201ENST00000316763 MAP3K14Q99558 947 aa16.25■□□□□ 0.19
VRK3-201ENST00000316763 ZKSCAN3Q9BRR0 538 aa16.25■□□□□ 0.19
VRK3-201ENST00000316763 IDI2Q9BXS1 227 aa16.25■□□□□ 0.19
VRK3-201ENST00000316763 MYOZ2Q9NPC6 264 aa16.25■□□□□ 0.19
VRK3-201ENST00000316763 TAOK2Q9UL54 1235 aa16.25■□□□□ 0.19
VRK3-201ENST00000316763 FAM237AA0A1B0GTK4 181 aa16.25■□□□□ 0.19
VRK3-201ENST00000316763 EGFRP00533 1210 aa16.25■□□□□ 0.19
VRK3-201ENST00000316763 MMP1P03956 469 aa16.25■□□□□ 0.19
VRK3-201ENST00000316763 LRMPQ12912 555 aa16.25■□□□□ 0.19
VRK3-201ENST00000316763 RBM26Q5T8P6 1007 aaKnown RBP16.25■□□□□ 0.19
VRK3-201ENST00000316763 SAMD7Q7Z3H4 446 aa16.25■□□□□ 0.19
VRK3-201ENST00000316763 IQCA1Q86XH1 822 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 703.9 ms