RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 RPTORQ8N122 1335 aa23.4■■□□□ 1.34
LIME1-201ENST00000309546 A0A0G2JMZ2 1700 aa23.4■■□□□ 1.34
LIME1-201ENST00000309546 RLFQ13129 1914 aa23.4■■□□□ 1.34
LIME1-201ENST00000309546 GPAA1O43292 621 aa23.4■■□□□ 1.34
LIME1-201ENST00000309546 KIAA1755Q5JYT7 1200 aa23.4■■□□□ 1.34
LIME1-201ENST00000309546 MORN1Q5T089 497 aa23.4■■□□□ 1.34
LIME1-201ENST00000309546 LBX2Q6XYB7 198 aa23.4■■□□□ 1.34
LIME1-201ENST00000309546 APBA2Q99767 749 aa23.4■■□□□ 1.34
LIME1-201ENST00000309546 ZBTB47Q9UFB7 747 aaPredicted RBP23.4■■□□□ 1.34
LIME1-201ENST00000309546 PARP14Q460N5 1801 aa23.39■■□□□ 1.33
LIME1-201ENST00000309546 GSG1L2A8MUP6 293 aa23.39■■□□□ 1.33
LIME1-201ENST00000309546 MINDY4BA8MYZ0 360 aa23.39■■□□□ 1.33
LIME1-201ENST00000309546 H0YGN5 161 aa23.39■■□□□ 1.33
LIME1-201ENST00000309546 M0R2C6 588 aa23.39■■□□□ 1.33
LIME1-201ENST00000309546 GLRX3O76003 335 aaKnown RBP23.39■■□□□ 1.33
LIME1-201ENST00000309546 XRCC5P13010 732 aaKnown RBP23.39■■□□□ 1.33
LIME1-201ENST00000309546 PRKAR2AP13861 404 aaKnown RBP23.39■■□□□ 1.33
LIME1-201ENST00000309546 LRRFIP1Q32MZ4 808 aaKnown RBP23.39■■□□□ 1.33
LIME1-201ENST00000309546 SAMD1Q6SPF0 538 aaPredicted RBP23.39■■□□□ 1.33
LIME1-201ENST00000309546 PI4K2BQ8TCG2 481 aa23.39■■□□□ 1.33
LIME1-201ENST00000309546 FSD1Q9BTV5 496 aa23.39■■□□□ 1.33
LIME1-201ENST00000309546 TMX2Q9Y320 296 aa23.39■■□□□ 1.33
LIME1-201ENST00000309546 MX1P20591 662 aa23.38■■□□□ 1.33
LIME1-201ENST00000309546 TDO2P48775 406 aa23.38■■□□□ 1.33
LIME1-201ENST00000309546 MAP2K5Q13163 448 aa23.38■■□□□ 1.33
LIME1-201ENST00000309546 COG2Q14746 738 aa23.38■■□□□ 1.33
LIME1-201ENST00000309546 CCL14Q16627 93 aa23.38■■□□□ 1.33
LIME1-201ENST00000309546 SIAH1Q8IUQ4 282 aa23.38■■□□□ 1.33
LIME1-201ENST00000309546 TRMT44Q8IYL2 757 aaKnown RBP23.38■■□□□ 1.33
LIME1-201ENST00000309546 LPAR1Q92633 364 aa23.38■■□□□ 1.33
LIME1-201ENST00000309546 USP6NLQ92738 828 aa23.38■■□□□ 1.33
LIME1-201ENST00000309546 CRISPLD2Q9H0B8 497 aa23.38■■□□□ 1.33
LIME1-201ENST00000309546 IVNS1ABPQ9Y6Y0 642 aa23.38■■□□□ 1.33
LIME1-201ENST00000309546 RAD21O60216 631 aa23.37■■□□□ 1.33
LIME1-201ENST00000309546 FLOT1O75955 427 aa23.37■■□□□ 1.33
LIME1-201ENST00000309546 APPP05067 770 aa23.37■■□□□ 1.33
LIME1-201ENST00000309546 EEF2P13639 858 aaKnown RBP23.37■■□□□ 1.33
LIME1-201ENST00000309546 VCPKMTQ9H867 229 aa23.37■■□□□ 1.33
LIME1-201ENST00000309546 KANSL2Q9H9L4 492 aa23.37■■□□□ 1.33
LIME1-201ENST00000309546 EPB41L4AQ9HCS5 686 aaPredicted RBP23.37■■□□□ 1.33
LIME1-201ENST00000309546 HOXC10Q9NYD6 342 aa23.37■■□□□ 1.33
LIME1-201ENST00000309546 GREB1LQ9C091 1923 aaPredicted RBP23.37■■□□□ 1.33
LIME1-201ENST00000309546 CAPN2P17655 700 aa23.36■■□□□ 1.33
LIME1-201ENST00000309546 GNAT2P19087 354 aa23.36■■□□□ 1.33
LIME1-201ENST00000309546 PTPREP23469 700 aa23.36■■□□□ 1.33
LIME1-201ENST00000309546 SBK1Q52WX2 424 aa23.36■■□□□ 1.33
LIME1-201ENST00000309546 HABP4Q5JVS0 413 aaKnown RBP23.36■■□□□ 1.33
LIME1-201ENST00000309546 ANKRD45Q5TZF3 282 aa23.36■■□□□ 1.33
LIME1-201ENST00000309546 GIMAP6Q6P9H5 292 aa23.36■■□□□ 1.33
LIME1-201ENST00000309546 DIS3LQ8TF46 1054 aaKnown RBP23.36■■□□□ 1.33
LIME1-201ENST00000309546 PAWRQ96IZ0 340 aaKnown RBP23.36■■□□□ 1.33
LIME1-201ENST00000309546 MKNK2Q9HBH9 465 aa23.36■■□□□ 1.33
LIME1-201ENST00000309546 WDR46O15213 610 aaKnown RBP23.35■■□□□ 1.33
LIME1-201ENST00000309546 PLS1Q14651 629 aa23.35■■□□□ 1.33
LIME1-201ENST00000309546 MAP3K21Q5TCX8 1036 aa23.35■■□□□ 1.33
LIME1-201ENST00000309546 ATG4CQ96DT6 458 aa23.35■■□□□ 1.33
LIME1-201ENST00000309546 ROBO3Q96MS0 1386 aa23.35■■□□□ 1.33
LIME1-201ENST00000309546 COL11A1P12107 1806 aaPredicted RBP23.35■■□□□ 1.33
LIME1-201ENST00000309546 ALPK3Q96L96 1907 aa23.34■■□□□ 1.33
LIME1-201ENST00000309546 SLC15A5A6NIM6 579 aa23.34■■□□□ 1.33
LIME1-201ENST00000309546 DSG3P32926 999 aa23.34■■□□□ 1.33
LIME1-201ENST00000309546 CACNB2Q08289 660 aaPredicted RBP23.34■■□□□ 1.33
LIME1-201ENST00000309546 SEC62Q99442 399 aaKnown RBP23.34■■□□□ 1.33
LIME1-201ENST00000309546 MOV10L1Q9BXT6 1211 aaKnown RBP23.34■■□□□ 1.33
LIME1-201ENST00000309546 COLQQ9Y215 455 aaPredicted RBP23.34■■□□□ 1.33
LIME1-201ENST00000309546 MYH4Q9Y623 1939 aa23.33■■□□□ 1.33
LIME1-201ENST00000309546 RASA1P20936 1047 aa23.33■■□□□ 1.33
LIME1-201ENST00000309546 CCND3P30281 292 aaPredicted RBP23.33■■□□□ 1.33
LIME1-201ENST00000309546 GRB14Q14449 540 aa23.33■■□□□ 1.33
LIME1-201ENST00000309546 NECAB2Q7Z6G3 386 aa23.33■■□□□ 1.33
LIME1-201ENST00000309546 SPATC1LQ9H0A9 340 aa23.33■■□□□ 1.33
LIME1-201ENST00000309546 GOPCQ9HD26 462 aa23.33■■□□□ 1.33
LIME1-201ENST00000309546 FRMPD3Q5JV73 1810 aa23.33■■□□□ 1.32
LIME1-201ENST00000309546 ZNF236Q9UL36 1845 aa23.32■■□□□ 1.32
LIME1-201ENST00000309546 MB21D1Q8N884 522 aa23.32■■□□□ 1.32
LIME1-201ENST00000309546 ANKLE1Q8NAG6 615 aa23.32■■□□□ 1.32
LIME1-201ENST00000309546 FLRT1Q9NZU1 646 aa23.32■■□□□ 1.32
LIME1-201ENST00000309546 NR2E3Q9Y5X4 410 aa23.32■■□□□ 1.32
LIME1-201ENST00000309546 CEP290O15078 2479 aa23.32■■□□□ 1.32
LIME1-201ENST00000309546 SALL3Q9BXA9 1300 aa23.32■■□□□ 1.32
LIME1-201ENST00000309546 PATL2C9JE40 543 aaKnown RBP23.31■■□□□ 1.32
LIME1-201ENST00000309546 EVI5O60447 810 aa23.31■■□□□ 1.32
LIME1-201ENST00000309546 PRDM1O75626 825 aa23.31■■□□□ 1.32
LIME1-201ENST00000309546 ERCC3P19447 782 aa23.31■■□□□ 1.32
LIME1-201ENST00000309546 MFSD14CQ5VZR4 134 aa23.31■■□□□ 1.32
LIME1-201ENST00000309546 NCAPG2Q86XI2 1143 aa23.31■■□□□ 1.32
LIME1-201ENST00000309546 IFNL3Q8IZI9 196 aa23.31■■□□□ 1.32
LIME1-201ENST00000309546 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.31■■□□□ 1.32
LIME1-201ENST00000309546 NACAP1Q9BZK3 213 aa23.31■■□□□ 1.32
LIME1-201ENST00000309546 HDAC1Q13547 482 aaPredicted RBP23.3■■□□□ 1.32
LIME1-201ENST00000309546 ZMYM1Q5SVZ6 1142 aa23.3■■□□□ 1.32
LIME1-201ENST00000309546 FAM83BQ5T0W9 1011 aa23.3■■□□□ 1.32
LIME1-201ENST00000309546 CHRDL2Q6WN34 429 aa23.3■■□□□ 1.32
LIME1-201ENST00000309546 DPP9Q86TI2 863 aa23.3■■□□□ 1.32
LIME1-201ENST00000309546 SHCBP1Q8NEM2 672 aa23.3■■□□□ 1.32
LIME1-201ENST00000309546 NPLOC4Q8TAT6 608 aa23.3■■□□□ 1.32
LIME1-201ENST00000309546 NAPBQ9H115 298 aa23.3■■□□□ 1.32
LIME1-201ENST00000309546 FBXO28Q9NVF7 368 aa23.3■■□□□ 1.32
LIME1-201ENST00000309546 OGDHLQ9ULD0 1010 aa23.3■■□□□ 1.32
LIME1-201ENST00000309546 ADORA2AP29274 412 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms