RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 IL9RQ01113 521 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 GLE1Q53GS7 698 aaKnown RBP15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 ATG16L1Q676U5 607 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 KLHL7Q8IXQ5 586 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 RBM8AQ9Y5S9 174 aaKnown RBP15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 HOOK2Q96ED9 719 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 SNRKQ9NRH2 765 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 KRT4P19013 534 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 SKOR1P84550 965 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 NOP9Q86U38 636 aaKnown RBP15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 IFT122Q9HBG6 1241 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 DIABLOQ9NR28 239 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 SKIP12755 728 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 MAP3K7O43318 606 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 ATF7P17544 494 aaPredicted RBP15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 ADCY8P40145 1251 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 BBS5Q8N3I7 341 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 FBXW4P57775 412 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 MRPL44Q9H9J2 332 aaKnown RBP15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 CCDC61Q9Y6R9 512 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 OSCARQ8IYS5 282 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 GIPC2Q8TF65 315 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.28■□□□□ 0.041e-14■■■■■ 125.5
CCDC88A-201ENST00000263630 NAIPQ13075 1403 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 U2AF2P26368 475 aaKnown RBP eCLIP15.28■□□□□ 0.045e-7■■■■□ 23.2
CCDC88A-201ENST00000263630 KLHL30Q0D2K2 578 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 LZICQ8WZA0 190 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 LRRC37BQ96QE4 947 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 CAPS2Q9BXY5 557 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 IFIH1Q9BYX4 1025 aaKnown RBP15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 MCM9Q9NXL9 1143 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 ZBBXA8MT70 800 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 PARD3BQ8TEW8 1205 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 MED10Q9BTT4 135 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 IVNS1ABPQ9Y6Y0 642 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 H3BRJ5 948 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 GCNT3O95395 438 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 TRIM59Q8IWR1 403 aa15.28■□□□□ 0.04
CCDC88A-201ENST00000263630 KRT19P08727 400 aa15.27■□□□□ 0.04
CCDC88A-201ENST00000263630 NLRP3Q96P20 1036 aa15.27■□□□□ 0.04
CCDC88A-201ENST00000263630 VPS16Q9H269 839 aa15.27■□□□□ 0.04
CCDC88A-201ENST00000263630 JDP2Q8WYK2 163 aa15.27■□□□□ 0.04
CCDC88A-201ENST00000263630 MCF2P10911 925 aa15.27■□□□□ 0.04
CCDC88A-201ENST00000263630 PRIM1P49642 420 aaKnown RBP15.27■□□□□ 0.04
CCDC88A-201ENST00000263630 PAG1Q9NWQ8 432 aa15.27■□□□□ 0.04
CCDC88A-201ENST00000263630 INHBAP08476 426 aa15.27■□□□□ 0.03
CCDC88A-201ENST00000263630 UPF3AQ9H1J1 476 aaKnown RBP15.27■□□□□ 0.03
CCDC88A-201ENST00000263630 YY1AP1Q9H869 796 aa15.27■□□□□ 0.03
CCDC88A-201ENST00000263630 TSC1Q92574 1164 aa15.27■□□□□ 0.03
CCDC88A-201ENST00000263630 DNM3Q9UQ16 869 aa15.27■□□□□ 0.03
CCDC88A-201ENST00000263630 SAR1BQ9Y6B6 198 aa15.27■□□□□ 0.03
CCDC88A-201ENST00000263630 SYCE1LA8MT33 242 aa15.27■□□□□ 0.03
CCDC88A-201ENST00000263630 SCYL3Q8IZE3 742 aa15.27■□□□□ 0.03
CCDC88A-201ENST00000263630 CCDC92Q53HC0 331 aaPredicted RBP15.27■□□□□ 0.03
CCDC88A-201ENST00000263630 GSDMAQ96QA5 445 aa15.27■□□□□ 0.03
CCDC88A-201ENST00000263630 OTUD6AQ7L8S5 288 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 DDX42Q86XP3 938 aaKnown RBP eCLIP15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 ST13P4Q8IZP2 240 aaPredicted RBP15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 ZBTB9Q96C00 473 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 XPAP23025 273 aaPredicted RBP15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 APBA1Q02410 837 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 CD19P15391 556 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 ATP6V1E2Q96A05 226 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 HECW1Q76N89 1606 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 ART3Q13508 389 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 TSTA3Q13630 321 aaPredicted RBP15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 SLC9C2Q5TAH2 1124 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 MCF2L2Q86YR7 1114 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 TEX9Q8N6V9 391 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 MLKLQ8NB16 471 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 MAP3K10Q02779 954 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 PPP2R5AQ15172 486 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 BEND3Q5T5X7 828 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 ZC3H12BQ5HYM0 836 aaKnown RBP15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 PIP4K2CQ8TBX8 421 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 SERPINB2P05120 415 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 LETM2Q2VYF4 491 aa15.26■□□□□ 0.03
CCDC88A-201ENST00000263630 ARHGAP44Q17R89 818 aa15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 INTS4Q96HW7 963 aaKnown RBP15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 N4BP1O75113 896 aaKnown RBP15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 SNRPA1P09661 255 aaKnown RBP15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 STX19Q8N4C7 294 aa15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 KIAA1107Q9UPP5 1409 aa15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 EFCAB13Q8IY85 973 aa15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 SNX21Q969T3 373 aa15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 ZBTB3Q9H5J0 574 aa15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 F8W031 263 aaPredicted RBP15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 KRIT1O00522 736 aa15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 YARSP54577 528 aaKnown RBP15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 WAPLQ7Z5K2 1190 aa15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 SYNJ2O15056 1496 aa15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 F6X3S4 739 aa15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 ZNF263O14978 683 aa15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 IL15P40933 162 aaPredicted RBP15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 ACBD5Q5T8D3 534 aaPredicted RBP15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 PGBD1Q96JS3 809 aa15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 TRIM8Q9BZR9 551 aa15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 ZC3H12CQ9C0D7 883 aaKnown RBP15.25■□□□□ 0.03
CCDC88A-201ENST00000263630 ATP5J2-PTCD1G3V325 749 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms