RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 ASIC3Q9UHC3 531 aa12.24□□□□□ -0.45
MSH6-201ENST00000234420 IRS4O14654 1257 aaPredicted RBP12.23□□□□□ -0.45
MSH6-201ENST00000234420 SNRPA1P09661 255 aaKnown RBP12.23□□□□□ -0.45
MSH6-201ENST00000234420 PAK2Q13177 524 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 SAAL1Q96ER3 474 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 POLR3EQ9NVU0 708 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 LETM2Q2VYF4 491 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 ANKRD13DQ6ZTN6 518 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 HACE1Q8IYU2 909 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 FBXO41Q8TF61 875 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 RPS6KC1Q96S38 1066 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 GGA1Q9UJY5 639 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 KLF18A0A0U1RQI7 1052 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 EEPD1Q7L9B9 569 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 PSPC1Q8WXF1 523 aaKnown RBP12.23□□□□□ -0.45
MSH6-201ENST00000234420 ALG1Q9BT22 464 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 PIDD1Q9HB75 910 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 AKT3Q9Y243 479 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 RGS16O15492 202 aaPredicted RBP12.23□□□□□ -0.45
MSH6-201ENST00000234420 OTUD7BQ6GQQ9 843 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 COPS6Q7L5N1 327 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 F13A1P00488 732 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 EFCAB13Q8IY85 973 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 NCAPGQ9BPX3 1015 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 NDUFB9Q9Y6M9 179 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 TAF5LO75529 589 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 MYBP10242 640 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 BRD3Q15059 726 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 RPS6KA2Q15349 733 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 DISP3Q9P2K9 1392 aa12.23□□□□□ -0.45
MSH6-201ENST00000234420 TBC1D8O95759 1140 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 TAB3Q8N5C8 712 aaPredicted RBP12.22□□□□□ -0.45
MSH6-201ENST00000234420 SUGCTQ9HAC7 445 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 HELLSQ9NRZ9 838 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 TSR3Q9UJK0 312 aaKnown RBP12.22□□□□□ -0.45
MSH6-201ENST00000234420 C16orf87Q6PH81 154 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 KIAA2013Q8IYS2 634 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 FRMPD2Q68DX3 1309 aaPredicted RBP12.22□□□□□ -0.45
MSH6-201ENST00000234420 MAFGO15525 162 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 ZBTB43O43298 467 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 DLGAP5Q15398 846 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 NLRP7Q8WX94 980 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 HAUS8Q9BT25 410 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 CLRN2A0PK11 232 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 ZNF18P17022 549 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 HP1BP3Q5SSJ5 553 aaPredicted RBP12.22□□□□□ -0.45
MSH6-201ENST00000234420 CCDC138Q96M89 665 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 CSRNP2Q9H175 543 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 SYNJ2O15056 1496 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 SMTNP53814 917 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 LRMPQ12912 555 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 CTTNBP2NLQ9P2B4 639 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 RXRBP28702 533 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 FAM102BQ5T8I3 360 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 IGSF22Q8N9C0 903 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 ESR2Q92731 530 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 MROH2BQ7Z745 1585 aa12.22□□□□□ -0.45
MSH6-201ENST00000234420 EEF1B2P24534 225 aaKnown RBP12.21□□□□□ -0.45
MSH6-201ENST00000234420 IL2RBP14784 551 aa12.21□□□□□ -0.45
MSH6-201ENST00000234420 CTNNA1P35221 906 aaKnown RBP12.21□□□□□ -0.45
MSH6-201ENST00000234420 TUBB2AQ13885 445 aa12.21□□□□□ -0.45
MSH6-201ENST00000234420 PGBD3Q8N328 593 aa12.21□□□□□ -0.45
MSH6-201ENST00000234420 TUBB2BQ9BVA1 445 aa12.21□□□□□ -0.45
MSH6-201ENST00000234420 TMPOP42166 694 aaKnown RBP12.21□□□□□ -0.45
MSH6-201ENST00000234420 MAPK8IP1Q9UQF2 711 aa12.21□□□□□ -0.45
MSH6-201ENST00000234420 SDCCAG3Q96C92 435 aa12.21□□□□□ -0.45
MSH6-201ENST00000234420 VPS16Q9H269 839 aa12.21□□□□□ -0.45
MSH6-201ENST00000234420 ARHGEF9O43307 516 aa12.21□□□□□ -0.46
MSH6-201ENST00000234420 CDR2Q01850 454 aa12.21□□□□□ -0.46
MSH6-201ENST00000234420 ARHGEF6Q15052 776 aa12.21□□□□□ -0.46
MSH6-201ENST00000234420 CEP19Q96LK0 163 aa12.21□□□□□ -0.46
MSH6-201ENST00000234420 CWF19L2Q2TBE0 894 aaKnown RBP12.21□□□□□ -0.46
MSH6-201ENST00000234420 RINLQ6ZS11 566 aa12.21□□□□□ -0.46
MSH6-201ENST00000234420 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.21□□□□□ -0.46
MSH6-201ENST00000234420 DBF4Q9UBU7 674 aaPredicted RBP12.21□□□□□ -0.46
MSH6-201ENST00000234420 STK10O94804 968 aaKnown RBP12.2□□□□□ -0.46
MSH6-201ENST00000234420 KRT2P35908 639 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 SCYL3Q8IZE3 742 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 ANKRD35Q8N283 1001 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 KCTD17Q8N5Z5 321 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 CDC26Q8NHZ8 85 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 GCNAQ96QF7 691 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 C2CD5Q86YS7 1000 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 FLCNQ8NFG4 579 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 CENPKQ9BS16 269 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 KLF15Q9UIH9 416 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.2□□□□□ -0.46
MSH6-201ENST00000234420 MARK3P27448 753 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 TTF2Q9UNY4 1162 aaKnown RBP12.2□□□□□ -0.46
MSH6-201ENST00000234420 SPTLC2O15270 562 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 MTMR3Q13615 1198 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 RILPL1Q5EBL4 403 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 CYP26C1Q6V0L0 522 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 KRT23Q9C075 422 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 CROCCP2Q86T23 111 aa12.2□□□□□ -0.46
MSH6-201ENST00000234420 MYL3P08590 195 aa12.19□□□□□ -0.46
MSH6-201ENST00000234420 NBPF7P0C2Y1 421 aaPredicted RBP12.19□□□□□ -0.46
MSH6-201ENST00000234420 KRT3P12035 628 aa12.19□□□□□ -0.46
MSH6-201ENST00000234420 BRF1Q92994 677 aa12.19□□□□□ -0.46
MSH6-201ENST00000234420 PPWD1Q96BP3 646 aaKnown RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms