RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 PNMA1Q8ND90 353 aa18.85■□□□□ 0.61
LDB3-208ENST00000623007 FBXW7Q969H0 707 aa18.85■□□□□ 0.61
LDB3-208ENST00000623007 ZDHHC15Q96MV8 337 aa18.85■□□□□ 0.61
LDB3-208ENST00000623007 PANK2Q9BZ23 570 aa18.85■□□□□ 0.61
LDB3-208ENST00000623007 PCDHA7Q9UN72 937 aa18.85■□□□□ 0.61
LDB3-208ENST00000623007 RASA1P20936 1047 aa18.85■□□□□ 0.61
LDB3-208ENST00000623007 KRT2P35908 639 aa18.85■□□□□ 0.61
LDB3-208ENST00000623007 KIAA2012Q0VF49 1180 aa18.85■□□□□ 0.61
LDB3-208ENST00000623007 GRM4Q14833 912 aa18.85■□□□□ 0.61
LDB3-208ENST00000623007 GALNT17Q6IS24 598 aa18.85■□□□□ 0.61
LDB3-208ENST00000623007 RCSD1Q6JBY9 416 aa18.85■□□□□ 0.61
LDB3-208ENST00000623007 DHX36Q9H2U1 1008 aaKnown RBP18.85■□□□□ 0.61
LDB3-208ENST00000623007 NOL7Q9UMY1 257 aaKnown RBP18.85■□□□□ 0.61
LDB3-208ENST00000623007 USP17L3A6NCW0 530 aa18.84■□□□□ 0.61
LDB3-208ENST00000623007 USP17L4A6NCW7 530 aa18.84■□□□□ 0.61
LDB3-208ENST00000623007 KIF28PB7ZC32 967 aa18.84■□□□□ 0.61
LDB3-208ENST00000623007 PPFIA3O75145 1194 aa18.84■□□□□ 0.61
LDB3-208ENST00000623007 NR1I2O75469 434 aa18.84■□□□□ 0.61
LDB3-208ENST00000623007 USP17L1Q7RTZ2 530 aa18.84■□□□□ 0.61
LDB3-208ENST00000623007 FSIP1Q8NA03 581 aa18.84■□□□□ 0.61
LDB3-208ENST00000623007 C7orf43Q8WVR3 580 aa18.84■□□□□ 0.61
LDB3-208ENST00000623007 TIGD1Q96MW7 591 aa18.84■□□□□ 0.61
LDB3-208ENST00000623007 PHF20Q9BVI0 1012 aa18.84■□□□□ 0.61
LDB3-208ENST00000623007 EHD4Q9H223 541 aa18.84■□□□□ 0.61
LDB3-208ENST00000623007 SERPINA10Q9UK55 444 aa18.84■□□□□ 0.61
LDB3-208ENST00000623007 CUTAO60888 179 aa18.83■□□□□ 0.61
LDB3-208ENST00000623007 PLCD1P51178 756 aa18.83■□□□□ 0.61
LDB3-208ENST00000623007 AIFM3Q96NN9 605 aa18.83■□□□□ 0.61
LDB3-208ENST00000623007 CLIC4Q9Y696 253 aa18.83■□□□□ 0.61
LDB3-208ENST00000623007 CNTNAP5Q8WYK1 1306 aa18.83■□□□□ 0.61
LDB3-208ENST00000623007 SLX4Q8IY92 1834 aa18.83■□□□□ 0.6
LDB3-208ENST00000623007 TOP1P11387 765 aaKnown RBP18.82■□□□□ 0.6
LDB3-208ENST00000623007 SCG2P13521 617 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 TRAPPC10P48553 1259 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 NOVP48745 357 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 PFKFB3Q16875 520 aaPredicted RBP18.82■□□□□ 0.6
LDB3-208ENST00000623007 DOK7Q18PE1 504 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 CCDC93Q567U6 631 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 ENGASEQ8NFI3 743 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 CCDC148Q8NFR7 591 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 CCDC34Q96HJ3 373 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 PDLIM2Q96JY6 352 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 CCDC17Q96LX7 622 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 IL17RBQ9NRM6 502 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 USP40Q9NVE5 1235 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 V9GY48 417 aaPredicted RBP18.82■□□□□ 0.6
LDB3-208ENST00000623007 ECE2O60344 883 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 SLC51AQ86UW1 340 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 ELOA2Q8IYF1 753 aaPredicted RBP18.82■□□□□ 0.6
LDB3-208ENST00000623007 CERS5Q8N5B7 392 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 TTLL6Q8N841 843 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 FAM200AQ8TCP9 573 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 CCDC12Q8WUD4 166 aaPredicted RBP18.82■□□□□ 0.6
LDB3-208ENST00000623007 PSMD1Q99460 953 aa18.82■□□□□ 0.6
LDB3-208ENST00000623007 FAM237AA0A1B0GTK4 181 aa18.81■□□□□ 0.6
LDB3-208ENST00000623007 hCG_1984214I3L0E3 225 aa18.81■□□□□ 0.6
LDB3-208ENST00000623007 CRKP46108 304 aa18.81■□□□□ 0.6
LDB3-208ENST00000623007 TYRO3Q06418 890 aa18.81■□□□□ 0.6
LDB3-208ENST00000623007 PKN1Q16512 942 aa18.81■□□□□ 0.6
LDB3-208ENST00000623007 ZNF713Q8N859 430 aaPredicted RBP18.81■□□□□ 0.6
LDB3-208ENST00000623007 ZNF579Q8NAF0 562 aaKnown RBP18.81■□□□□ 0.6
LDB3-208ENST00000623007 DYNLL2Q96FJ2 89 aa18.81■□□□□ 0.6
LDB3-208ENST00000623007 SAP30BPQ9UHR5 308 aaKnown RBP18.81■□□□□ 0.6
LDB3-208ENST00000623007 SERPINB13Q9UIV8 391 aa18.81■□□□□ 0.6
LDB3-208ENST00000623007 HOOK1Q9UJC3 728 aaKnown RBP18.81■□□□□ 0.6
LDB3-208ENST00000623007 SNED1Q8TER0 1413 aa18.8■□□□□ 0.6
LDB3-208ENST00000623007 BTBD18B2RXH4 712 aa18.8■□□□□ 0.6
LDB3-208ENST00000623007 SMIM22K7EJ46 135 aa18.8■□□□□ 0.6
LDB3-208ENST00000623007 GUCY1A2P33402 732 aa18.8■□□□□ 0.6
LDB3-208ENST00000623007 GABPAQ06546 454 aa18.8■□□□□ 0.6
LDB3-208ENST00000623007 SNW1Q13573 536 aaKnown RBP18.8■□□□□ 0.6
LDB3-208ENST00000623007 PTPAQ15257 358 aa18.8■□□□□ 0.6
LDB3-208ENST00000623007 ZRSR1Q15695 479 aaKnown RBP18.8■□□□□ 0.6
LDB3-208ENST00000623007 DACT2Q5SW24 774 aa18.8■□□□□ 0.6
LDB3-208ENST00000623007 FMR1NBQ8N0W7 255 aaPredicted RBP18.8■□□□□ 0.6
LDB3-208ENST00000623007 CCDC82Q8N4S0 544 aa18.8■□□□□ 0.6
LDB3-208ENST00000623007 KRI1Q8N9T8 703 aaKnown RBP18.8■□□□□ 0.6
LDB3-208ENST00000623007 OSBPL5Q9H0X9 879 aaPredicted RBP18.8■□□□□ 0.6
LDB3-208ENST00000623007 STX8Q9UNK0 236 aa18.8■□□□□ 0.6
LDB3-208ENST00000623007 WDHD1O75717 1129 aaPredicted RBP18.79■□□□□ 0.6
LDB3-208ENST00000623007 PLEKHA8P1O95397 391 aa18.79■□□□□ 0.6
LDB3-208ENST00000623007 MMP14P50281 582 aa18.79■□□□□ 0.6
LDB3-208ENST00000623007 SRBD1Q8N5C6 995 aaKnown RBP18.79■□□□□ 0.6
LDB3-208ENST00000623007 TMEM47Q9BQJ4 181 aa18.79■□□□□ 0.6
LDB3-208ENST00000623007 SPZ1Q9BXG8 430 aa18.79■□□□□ 0.6
LDB3-208ENST00000623007 IDI2Q9BXS1 227 aa18.79■□□□□ 0.6
LDB3-208ENST00000623007 FTOQ9C0B1 505 aaKnown RBP eCLIP18.79■□□□□ 0.6
LDB3-208ENST00000623007 NAT10Q9H0A0 1025 aaKnown RBP18.79■□□□□ 0.6
LDB3-208ENST00000623007 GJB4Q9NTQ9 266 aa18.79■□□□□ 0.6
LDB3-208ENST00000623007 NMT2O60551 498 aa18.79■□□□□ 0.6
LDB3-208ENST00000623007 STX1AQ16623 288 aa18.79■□□□□ 0.6
LDB3-208ENST00000623007 TPRNQ4KMQ1 711 aa18.79■□□□□ 0.6
LDB3-208ENST00000623007 APOBEC3HQ6NTF7 200 aaKnown RBP18.79■□□□□ 0.6
LDB3-208ENST00000623007 FAM43AQ8N2R8 423 aa18.79■□□□□ 0.6
LDB3-208ENST00000623007 SDF4Q9BRK5 362 aa18.79■□□□□ 0.6
LDB3-208ENST00000623007 DBNDD1Q9H9R9 158 aa18.79■□□□□ 0.6
LDB3-208ENST00000623007 COL2A1P02458 1487 aaPredicted RBP18.79■□□□□ 0.6
LDB3-208ENST00000623007 EP400Q96L91 3159 aa18.78■□□□□ 0.6
LDB3-208ENST00000623007 PALM3A6NDB9 673 aaPredicted RBP18.78■□□□□ 0.6
LDB3-208ENST00000623007 PARP1P09874 1014 aaKnown RBP18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms