RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 SIAH1Q8IUQ4 282 aa23.9■■□□□ 1.42
SSBP4-210ENST00000601444 ZNF296Q8WUU4 475 aaPredicted RBP23.9■■□□□ 1.42
SSBP4-210ENST00000601444 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.9■■□□□ 1.42
SSBP4-210ENST00000601444 ZFYVE28Q9HCC9 887 aa23.9■■□□□ 1.42
SSBP4-210ENST00000601444 ZCCHC17Q9NP64 241 aaKnown RBP23.9■■□□□ 1.42
SSBP4-210ENST00000601444 EMILIN3Q9NT22 766 aa23.9■■□□□ 1.42
SSBP4-210ENST00000601444 PTPRFP10586 1907 aa23.9■■□□□ 1.42
SSBP4-210ENST00000601444 AGTPBP1Q9UPW5 1226 aa23.89■■□□□ 1.41
SSBP4-210ENST00000601444 C19orf81C9J6K1 198 aa23.88■■□□□ 1.41
SSBP4-210ENST00000601444 HAND2P61296 217 aa23.88■■□□□ 1.41
SSBP4-210ENST00000601444 BMP2KLQ5H9B9 411 aa23.88■■□□□ 1.41
SSBP4-210ENST00000601444 PROCA1Q8NCQ7 364 aaPredicted RBP23.88■■□□□ 1.41
SSBP4-210ENST00000601444 FEZ1Q99689 392 aa23.88■■□□□ 1.41
SSBP4-210ENST00000601444 ANAPC4Q9UJX5 808 aa23.88■■□□□ 1.41
SSBP4-210ENST00000601444 ZNF444Q8N0Y2 327 aaPredicted RBP23.87■■□□□ 1.41
SSBP4-210ENST00000601444 NBPF3Q9H094 633 aa23.87■■□□□ 1.41
SSBP4-210ENST00000601444 TMOD4Q9NZQ9 345 aa23.87■■□□□ 1.41
SSBP4-210ENST00000601444 ZMYM6O95789 1325 aa23.86■■□□□ 1.41
SSBP4-210ENST00000601444 TLR2O60603 784 aa23.86■■□□□ 1.41
SSBP4-210ENST00000601444 SLC3A2P08195 630 aaKnown RBP23.86■■□□□ 1.41
SSBP4-210ENST00000601444 ICA1Q05084 483 aa23.86■■□□□ 1.41
SSBP4-210ENST00000601444 PDE4BQ07343 736 aa23.86■■□□□ 1.41
SSBP4-210ENST00000601444 FAM47AQ5JRC9 791 aa23.86■■□□□ 1.41
SSBP4-210ENST00000601444 USP17L2Q6R6M4 530 aa23.86■■□□□ 1.41
SSBP4-210ENST00000601444 DSCC1Q9BVC3 393 aa23.86■■□□□ 1.41
SSBP4-210ENST00000601444 KIAA1683Q9H0B3 1180 aa23.86■■□□□ 1.41
SSBP4-210ENST00000601444 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.86■■□□□ 1.41
SSBP4-210ENST00000601444 CASP8AP2Q9UKL3 1982 aa23.85■■□□□ 1.41
SSBP4-210ENST00000601444 MYH8P13535 1937 aa23.85■■□□□ 1.41
SSBP4-210ENST00000601444 SGSM2O43147 1006 aa23.85■■□□□ 1.41
SSBP4-210ENST00000601444 FKTNO75072 461 aa23.85■■□□□ 1.41
SSBP4-210ENST00000601444 EEF2P13639 858 aaKnown RBP23.85■■□□□ 1.41
SSBP4-210ENST00000601444 NOM1Q5C9Z4 860 aaKnown RBP23.85■■□□□ 1.41
SSBP4-210ENST00000601444 RUFY2Q8WXA3 655 aa23.85■■□□□ 1.41
SSBP4-210ENST00000601444 ZNF287Q9HBT7 754 aa23.85■■□□□ 1.41
SSBP4-210ENST00000601444 CPA4Q9UI42 421 aa23.85■■□□□ 1.41
SSBP4-210ENST00000601444 SLC45A1Q9Y2W3 748 aa23.85■■□□□ 1.41
SSBP4-210ENST00000601444 LOC285556D6RIA3 1793 aa23.85■■□□□ 1.41
SSBP4-210ENST00000601444 RAD50Q92878 1312 aa23.84■■□□□ 1.41
SSBP4-210ENST00000601444 ADGRA2Q96PE1 1338 aa23.84■■□□□ 1.41
SSBP4-210ENST00000601444 CAP1Q01518 475 aa23.84■■□□□ 1.41
SSBP4-210ENST00000601444 ATP2B2Q01814 1243 aa23.84■■□□□ 1.41
SSBP4-210ENST00000601444 PTH1RQ03431 593 aa23.84■■□□□ 1.41
SSBP4-210ENST00000601444 KIAA1755Q5JYT7 1200 aa23.84■■□□□ 1.41
SSBP4-210ENST00000601444 PARK7Q99497 189 aaKnown RBP23.84■■□□□ 1.41
SSBP4-210ENST00000601444 KANSL2Q9H9L4 492 aa23.84■■□□□ 1.41
SSBP4-210ENST00000601444 TFAP4Q01664 338 aa23.83■■□□□ 1.41
SSBP4-210ENST00000601444 C17orf99Q6UX52 265 aa23.83■■□□□ 1.41
SSBP4-210ENST00000601444 TBC1D10CQ8IV04 446 aa23.83■■□□□ 1.41
SSBP4-210ENST00000601444 NKX2-3Q8TAU0 364 aa23.83■■□□□ 1.41
SSBP4-210ENST00000601444 C12orf42Q96LP6 360 aa23.83■■□□□ 1.41
SSBP4-210ENST00000601444 IGKV6D-41A0A0C4DH26 115 aa23.82■■□□□ 1.4
SSBP4-210ENST00000601444 FGRP09769 529 aa23.82■■□□□ 1.4
SSBP4-210ENST00000601444 USP14P54578 494 aa23.82■■□□□ 1.4
SSBP4-210ENST00000601444 SP3Q02447 781 aa23.82■■□□□ 1.4
SSBP4-210ENST00000601444 ASCC2Q9H1I8 757 aaPredicted RBP23.82■■□□□ 1.4
SSBP4-210ENST00000601444 ARHGEF10LQ9HCE6 1279 aa23.82■■□□□ 1.4
SSBP4-210ENST00000601444 TMX2Q9Y320 296 aa23.82■■□□□ 1.4
SSBP4-210ENST00000601444 ZNF213O14771 459 aa23.81■■□□□ 1.4
SSBP4-210ENST00000601444 ECM2O94769 699 aaPredicted RBP23.81■■□□□ 1.4
SSBP4-210ENST00000601444 TSPY3P0CV98 308 aa23.81■■□□□ 1.4
SSBP4-210ENST00000601444 TSPY8P0CW00 308 aa23.81■■□□□ 1.4
SSBP4-210ENST00000601444 VCAM1P19320 739 aa23.81■■□□□ 1.4
SSBP4-210ENST00000601444 HOXA7P31268 230 aaPredicted RBP23.81■■□□□ 1.4
SSBP4-210ENST00000601444 NEDD1Q8NHV4 660 aa23.81■■□□□ 1.4
SSBP4-210ENST00000601444 CD99L2Q8TCZ2 262 aa23.81■■□□□ 1.4
SSBP4-210ENST00000601444 CEP95Q96GE4 821 aa23.81■■□□□ 1.4
SSBP4-210ENST00000601444 GREB1LQ9C091 1923 aaPredicted RBP23.8■■□□□ 1.4
SSBP4-210ENST00000601444 ORC4O43929 436 aa23.8■■□□□ 1.4
SSBP4-210ENST00000601444 RANBP6O60518 1105 aaKnown RBP23.8■■□□□ 1.4
SSBP4-210ENST00000601444 OSBPP22059 807 aa23.8■■□□□ 1.4
SSBP4-210ENST00000601444 PABPC4Q13310 644 aaKnown RBP eCLIP23.8■■□□□ 1.42e-6■□□□□ 10.8
SSBP4-210ENST00000601444 RRP12Q5JTH9 1297 aaKnown RBP23.8■■□□□ 1.4
SSBP4-210ENST00000601444 SPICE1Q8N0Z3 855 aa23.8■■□□□ 1.4
SSBP4-210ENST00000601444 TOMM22Q9NS69 142 aa23.8■■□□□ 1.4
SSBP4-210ENST00000601444 NMT2O60551 498 aa23.79■■□□□ 1.4
SSBP4-210ENST00000601444 AKNAD1Q5T1N1 836 aa23.79■■□□□ 1.4
SSBP4-210ENST00000601444 SMCR8Q8TEV9 937 aaPredicted RBP23.79■■□□□ 1.4
SSBP4-210ENST00000601444 STAG1Q8WVM7 1258 aa23.79■■□□□ 1.4
SSBP4-210ENST00000601444 P2RX7Q99572 595 aaKnown RBP23.79■■□□□ 1.4
SSBP4-210ENST00000601444 ESYT1Q9BSJ8 1104 aa23.79■■□□□ 1.4
SSBP4-210ENST00000601444 IL17RBQ9NRM6 502 aa23.79■■□□□ 1.4
SSBP4-210ENST00000601444 MTMR4Q9NYA4 1195 aa23.79■■□□□ 1.4
SSBP4-210ENST00000601444 CLIP2Q9UDT6 1046 aa23.79■■□□□ 1.4
SSBP4-210ENST00000601444 PNMA3Q9UL41 463 aa23.79■■□□□ 1.4
SSBP4-210ENST00000601444 TSPY2A6NKD2 308 aa23.78■■□□□ 1.4
SSBP4-210ENST00000601444 PEX10O60683 326 aa23.78■■□□□ 1.4
SSBP4-210ENST00000601444 BCRP11274 1271 aa23.78■■□□□ 1.4
SSBP4-210ENST00000601444 MFSD6Q6ZSS7 791 aa23.78■■□□□ 1.4
SSBP4-210ENST00000601444 ARHGAP39Q9C0H5 1083 aa23.78■■□□□ 1.4
SSBP4-210ENST00000601444 RPAP3Q9H6T3 665 aaPredicted RBP23.78■■□□□ 1.4
SSBP4-210ENST00000601444 VCPKMTQ9H867 229 aa23.78■■□□□ 1.4
SSBP4-210ENST00000601444 NYAP2Q9P242 653 aa23.78■■□□□ 1.4
SSBP4-210ENST00000601444 CTNNA3Q9UI47 895 aa23.78■■□□□ 1.4
SSBP4-210ENST00000601444 NEDD4P46934 1319 aa23.78■■□□□ 1.4
SSBP4-210ENST00000601444 IRX3P78415 501 aaPredicted RBP23.77■■□□□ 1.4
SSBP4-210ENST00000601444 IMMTQ16891 758 aaKnown RBP23.77■■□□□ 1.4
SSBP4-210ENST00000601444 POTEEQ6S8J3 1075 aa23.77■■□□□ 1.4
SSBP4-210ENST00000601444 CATSPERGQ6ZRH7 1159 aa23.77■■□□□ 1.4
SSBP4-210ENST00000601444 ANKRD13CQ8N6S4 541 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms