RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 RGS2P41220 211 aa16.48■□□□□ 0.23
TRIM28-211ENST00000597968 CATSPERGQ6ZRH7 1159 aa16.48■□□□□ 0.23
TRIM28-211ENST00000597968 USP6NLQ92738 828 aa16.48■□□□□ 0.23
TRIM28-211ENST00000597968 TXNRD2Q9NNW7 524 aa16.48■□□□□ 0.23
TRIM28-211ENST00000597968 ATP8A2Q9NTI2 1148 aa16.48■□□□□ 0.23
TRIM28-211ENST00000597968 SWAP70Q9UH65 585 aa16.48■□□□□ 0.23
TRIM28-211ENST00000597968 ATP5JP18859 108 aa16.47■□□□□ 0.23
TRIM28-211ENST00000597968 SHMT1P34896 483 aa16.47■□□□□ 0.23
TRIM28-211ENST00000597968 RAB3GAP1Q15042 981 aa16.47■□□□□ 0.23
TRIM28-211ENST00000597968 MORN1Q5T089 497 aa16.47■□□□□ 0.23
TRIM28-211ENST00000597968 GPR142Q7Z601 462 aa16.47■□□□□ 0.23
TRIM28-211ENST00000597968 PLEKHH3Q7Z736 793 aa16.47■□□□□ 0.23
TRIM28-211ENST00000597968 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.47■□□□□ 0.236e-8■□□□□ 10.9
TRIM28-211ENST00000597968 NBPF3Q9H094 633 aa16.47■□□□□ 0.23
TRIM28-211ENST00000597968 PRO3102Q9H379 93 aa16.47■□□□□ 0.23
TRIM28-211ENST00000597968 OGDHLQ9ULD0 1010 aa16.47■□□□□ 0.23
TRIM28-211ENST00000597968 MYO5AQ9Y4I1 1855 aaKnown RBP16.47■□□□□ 0.23
TRIM28-211ENST00000597968 RANBP2P49792 3224 aaKnown RBP16.47■□□□□ 0.23
TRIM28-211ENST00000597968 MYH1P12882 1939 aa16.47■□□□□ 0.23
TRIM28-211ENST00000597968 ZNF532Q9HCE3 1301 aa16.46■□□□□ 0.23
TRIM28-211ENST00000597968 TCRBV5S4A2TA0A5A2 114 aa16.46■□□□□ 0.23
TRIM28-211ENST00000597968 PLCD1P51178 756 aa16.46■□□□□ 0.23
TRIM28-211ENST00000597968 CHRDL2Q6WN34 429 aa16.46■□□□□ 0.23
TRIM28-211ENST00000597968 SIRT2Q8IXJ6 389 aa16.46■□□□□ 0.23
TRIM28-211ENST00000597968 TRIB2Q92519 343 aa16.46■□□□□ 0.23
TRIM28-211ENST00000597968 PAWRQ96IZ0 340 aaKnown RBP16.46■□□□□ 0.23
TRIM28-211ENST00000597968 APBA2Q99767 749 aa16.46■□□□□ 0.23
TRIM28-211ENST00000597968 DCP1AQ9NPI6 582 aaPredicted RBP16.46■□□□□ 0.23
TRIM28-211ENST00000597968 NDUFB9Q9Y6M9 179 aa16.46■□□□□ 0.23
TRIM28-211ENST00000597968 DDX60LQ5H9U9 1706 aaKnown RBP16.45■□□□□ 0.22
TRIM28-211ENST00000597968 GOLIM4O00461 696 aa16.45■□□□□ 0.22
TRIM28-211ENST00000597968 ZKSCAN1P17029 563 aaPredicted RBP16.45■□□□□ 0.22
TRIM28-211ENST00000597968 VCAM1P19320 739 aa16.45■□□□□ 0.22
TRIM28-211ENST00000597968 CYP2B6P20813 491 aa16.45■□□□□ 0.22
TRIM28-211ENST00000597968 SHROOM1Q2M3G4 852 aaPredicted RBP16.45■□□□□ 0.22
TRIM28-211ENST00000597968 Q3C1V9 767 aa16.45■□□□□ 0.22
TRIM28-211ENST00000597968 TMEM179Q6ZVK1 233 aa16.45■□□□□ 0.22
TRIM28-211ENST00000597968 AMOTL1Q8IY63 956 aa16.45■□□□□ 0.22
TRIM28-211ENST00000597968 LPAR1Q92633 364 aa16.45■□□□□ 0.22
TRIM28-211ENST00000597968 SH2D4AQ9H788 454 aa16.45■□□□□ 0.22
TRIM28-211ENST00000597968 PAG1Q9NWQ8 432 aa16.45■□□□□ 0.22
TRIM28-211ENST00000597968 MCM9Q9NXL9 1143 aa16.45■□□□□ 0.22
TRIM28-211ENST00000597968 HOXC10Q9NYD6 342 aa16.45■□□□□ 0.22
TRIM28-211ENST00000597968 RCAN3Q9UKA8 241 aa16.45■□□□□ 0.22
TRIM28-211ENST00000597968 COG6Q9Y2V7 657 aa16.45■□□□□ 0.22
TRIM28-211ENST00000597968 SLC15A5A6NIM6 579 aa16.44■□□□□ 0.22
TRIM28-211ENST00000597968 HOXC6P09630 235 aa16.44■□□□□ 0.22
TRIM28-211ENST00000597968 PRKAR2AP13861 404 aaKnown RBP16.44■□□□□ 0.22
TRIM28-211ENST00000597968 ADD2P35612 726 aa16.44■□□□□ 0.22
TRIM28-211ENST00000597968 MAP2K5Q13163 448 aa16.44■□□□□ 0.22
TRIM28-211ENST00000597968 UBE3CQ15386 1083 aa16.44■□□□□ 0.22
TRIM28-211ENST00000597968 ZSCAN25Q6NSZ9 544 aa16.44■□□□□ 0.22
TRIM28-211ENST00000597968 DDRGK1Q96HY6 314 aa16.44■□□□□ 0.22
TRIM28-211ENST00000597968 CCDC17Q96LX7 622 aa16.44■□□□□ 0.22
TRIM28-211ENST00000597968 DNAJC2Q99543 621 aaKnown RBP16.44■□□□□ 0.22
TRIM28-211ENST00000597968 HAUS7Q99871 368 aa16.44■□□□□ 0.22
TRIM28-211ENST00000597968 PAGR1Q9BTK6 254 aa16.44■□□□□ 0.22
TRIM28-211ENST00000597968 PORCNQ9H237 461 aa16.44■□□□□ 0.22
TRIM28-211ENST00000597968 CWC22Q9HCG8 908 aaKnown RBP16.44■□□□□ 0.22
TRIM28-211ENST00000597968 RBM27Q9P2N5 1060 aaKnown RBP16.44■□□□□ 0.22
TRIM28-211ENST00000597968 DOCK3Q8IZD9 2030 aa16.44■□□□□ 0.22
TRIM28-211ENST00000597968 STRNO43815 780 aa16.43■□□□□ 0.22
TRIM28-211ENST00000597968 MSCO60682 206 aa16.43■□□□□ 0.22
TRIM28-211ENST00000597968 MB21D1Q8N884 522 aa16.43■□□□□ 0.22
TRIM28-211ENST00000597968 EDC3Q96F86 508 aaKnown RBP16.43■□□□□ 0.22
TRIM28-211ENST00000597968 IVNS1ABPQ9Y6Y0 642 aa16.43■□□□□ 0.22
TRIM28-211ENST00000597968 PLXNB2O15031 1838 aa16.42■□□□□ 0.22
TRIM28-211ENST00000597968 CNMDO75829 334 aa16.42■□□□□ 0.22
TRIM28-211ENST00000597968 PTPREP23469 700 aa16.42■□□□□ 0.22
TRIM28-211ENST00000597968 GUCY1A2P33402 732 aa16.42■□□□□ 0.22
TRIM28-211ENST00000597968 BMP8BP34820 402 aa16.42■□□□□ 0.22
TRIM28-211ENST00000597968 COG2Q14746 738 aa16.42■□□□□ 0.22
TRIM28-211ENST00000597968 ACER1Q8TDN7 264 aa16.42■□□□□ 0.22
TRIM28-211ENST00000597968 LRRCC1Q9C099 1032 aa16.42■□□□□ 0.22
TRIM28-211ENST00000597968 C11orf49Q9H6J7 331 aa16.42■□□□□ 0.22
TRIM28-211ENST00000597968 SPDYE16A6NNV3 312 aaPredicted RBP16.41■□□□□ 0.22
TRIM28-211ENST00000597968 CACNB2Q08289 660 aaPredicted RBP16.41■□□□□ 0.22
TRIM28-211ENST00000597968 GRB14Q14449 540 aa16.41■□□□□ 0.22
TRIM28-211ENST00000597968 SEPT2Q15019 361 aa16.41■□□□□ 0.22
TRIM28-211ENST00000597968 ZYXQ15942 572 aaKnown RBP16.41■□□□□ 0.22
TRIM28-211ENST00000597968 MFSD14CQ5VZR4 134 aa16.41■□□□□ 0.22
TRIM28-211ENST00000597968 POTEEQ6S8J3 1075 aa16.41■□□□□ 0.22
TRIM28-211ENST00000597968 LCORLQ8N3X6 602 aa16.41■□□□□ 0.22
TRIM28-211ENST00000597968 SHCBP1Q8NEM2 672 aa16.41■□□□□ 0.22
TRIM28-211ENST00000597968 SDR42E1Q8WUS8 393 aa16.41■□□□□ 0.22
TRIM28-211ENST00000597968 RPAP3Q9H6T3 665 aaPredicted RBP16.41■□□□□ 0.22
TRIM28-211ENST00000597968 ARHGEF10LQ9HCE6 1279 aa16.41■□□□□ 0.22
TRIM28-211ENST00000597968 NAV1Q8NEY1 1877 aa16.4■□□□□ 0.22
TRIM28-211ENST00000597968 MPHOSPH10O00566 681 aaKnown RBP16.4■□□□□ 0.22
TRIM28-211ENST00000597968 MNX1P50219 401 aaPredicted RBP16.4■□□□□ 0.22
TRIM28-211ENST00000597968 TRIM32Q13049 653 aa16.4■□□□□ 0.22
TRIM28-211ENST00000597968 BOLA2Q9H3K6 86 aa16.4■□□□□ 0.22
TRIM28-211ENST00000597968 SZT2Q5T011 3432 aa16.4■□□□□ 0.22
TRIM28-211ENST00000597968 APBB1O00213 710 aa16.39■□□□□ 0.21
TRIM28-211ENST00000597968 COL6A1P12109 1028 aa16.39■□□□□ 0.21
TRIM28-211ENST00000597968 C12orf60Q5U649 245 aa16.39■□□□□ 0.21
TRIM28-211ENST00000597968 LHX8Q68G74 356 aa16.39■□□□□ 0.21
TRIM28-211ENST00000597968 ABRAQ8N0Z2 381 aa16.39■□□□□ 0.21
TRIM28-211ENST00000597968 ARMT1Q9H993 441 aa16.39■□□□□ 0.21
TRIM28-211ENST00000597968 SLC5A4Q9NY91 659 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms