RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 SKAP1Q86WV1 359 aa24.07■■□□□ 1.44
SS18-218ENST00000581021 SIAH1Q8IUQ4 282 aa24.07■■□□□ 1.44
SS18-218ENST00000581021 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.07■■□□□ 1.44
SS18-218ENST00000581021 ZYXQ15942 572 aaKnown RBP24.06■■□□□ 1.44
SS18-218ENST00000581021 TICAM2Q86XR7 235 aa24.06■■□□□ 1.44
SS18-218ENST00000581021 ERO1AQ96HE7 468 aa24.06■■□□□ 1.44
SS18-218ENST00000581021 CABP5Q9NP86 173 aa24.06■■□□□ 1.44
SS18-218ENST00000581021 GREB1LQ9C091 1923 aaPredicted RBP24.06■■□□□ 1.44
SS18-218ENST00000581021 C19orf81C9J6K1 198 aa24.05■■□□□ 1.44
SS18-218ENST00000581021 RASA1P20936 1047 aa24.05■■□□□ 1.44
SS18-218ENST00000581021 LACTBP83111 547 aaPredicted RBP24.05■■□□□ 1.44
SS18-218ENST00000581021 MCMDC2Q4G0Z9 681 aa24.05■■□□□ 1.44
SS18-218ENST00000581021 TMEM179Q6ZVK1 233 aa24.05■■□□□ 1.44
SS18-218ENST00000581021 KIAA1683Q9H0B3 1180 aa24.05■■□□□ 1.44
SS18-218ENST00000581021 TRIM17Q9Y577 477 aa24.05■■□□□ 1.44
SS18-218ENST00000581021 CAPN15O75808 1086 aa24.04■■□□□ 1.44
SS18-218ENST00000581021 ECM2O94769 699 aaPredicted RBP24.04■■□□□ 1.44
SS18-218ENST00000581021 C12orf42Q96LP6 360 aa24.04■■□□□ 1.44
SS18-218ENST00000581021 NAPBQ9H115 298 aa24.04■■□□□ 1.44
SS18-218ENST00000581021 ASCC2Q9H1I8 757 aaPredicted RBP24.04■■□□□ 1.44
SS18-218ENST00000581021 TMOD4Q9NZQ9 345 aa24.04■■□□□ 1.44
SS18-218ENST00000581021 TACC3Q9Y6A5 838 aa24.04■■□□□ 1.44
SS18-218ENST00000581021 PRDM1O75626 825 aa24.03■■□□□ 1.44
SS18-218ENST00000581021 KIAA1755Q5JYT7 1200 aa24.03■■□□□ 1.44
SS18-218ENST00000581021 USP17L2Q6R6M4 530 aa24.03■■□□□ 1.44
SS18-218ENST00000581021 CCDC17Q96LX7 622 aa24.03■■□□□ 1.44
SS18-218ENST00000581021 FEZ1Q99689 392 aa24.03■■□□□ 1.44
SS18-218ENST00000581021 NACAP1Q9BZK3 213 aa24.03■■□□□ 1.44
SS18-218ENST00000581021 IL25Q9H293 177 aa24.03■■□□□ 1.44
SS18-218ENST00000581021 CCDC171Q6TFL3 1326 aa24.03■■□□□ 1.44
SS18-218ENST00000581021 HOXA7P31268 230 aaPredicted RBP24.02■■□□□ 1.44
SS18-218ENST00000581021 PPARAQ07869 468 aa24.02■■□□□ 1.44
SS18-218ENST00000581021 POTEEQ6S8J3 1075 aa24.02■■□□□ 1.44
SS18-218ENST00000581021 PEX10O60683 326 aa24.01■■□□□ 1.43
SS18-218ENST00000581021 VCAM1P19320 739 aa24.01■■□□□ 1.43
SS18-218ENST00000581021 ICA1Q05084 483 aa24.01■■□□□ 1.43
SS18-218ENST00000581021 CWC27Q6UX04 472 aaKnown RBP24.01■■□□□ 1.43
SS18-218ENST00000581021 SMCR8Q8TEV9 937 aaPredicted RBP24.01■■□□□ 1.43
SS18-218ENST00000581021 TRIM47Q96LD4 638 aa24.01■■□□□ 1.43
SS18-218ENST00000581021 EFCC1Q9HA90 598 aa24.01■■□□□ 1.43
SS18-218ENST00000581021 HPS5Q9UPZ3 1129 aa24.01■■□□□ 1.43
SS18-218ENST00000581021 HSPD1P10809 573 aaKnown RBP24■■□□□ 1.43
SS18-218ENST00000581021 ALX1Q15699 326 aa24■■□□□ 1.43
SS18-218ENST00000581021 FBXO46Q6PJ61 603 aaPredicted RBP24■■□□□ 1.43
SS18-218ENST00000581021 P2RX7Q99572 595 aaKnown RBP24■■□□□ 1.43
SS18-218ENST00000581021 INCENPQ9NQS7 918 aa24■■□□□ 1.43
SS18-218ENST00000581021 PNMA3Q9UL41 463 aa24■■□□□ 1.43
SS18-218ENST00000581021 CENPFP49454 3210 aa23.99■■□□□ 1.43
SS18-218ENST00000581021 CTDSPL2Q05D32 466 aa23.99■■□□□ 1.43
SS18-218ENST00000581021 PKN2Q16513 984 aaKnown RBP23.99■■□□□ 1.43
SS18-218ENST00000581021 CENPQQ7L2Z9 268 aaPredicted RBP23.99■■□□□ 1.43
SS18-218ENST00000581021 ANKRD13CQ8N6S4 541 aa23.99■■□□□ 1.43
SS18-218ENST00000581021 DIAPH3Q9NSV4 1193 aa23.99■■□□□ 1.43
SS18-218ENST00000581021 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.99■■□□□ 1.43
SS18-218ENST00000581021 IGKV6D-41A0A0C4DH26 115 aa23.98■■□□□ 1.43
SS18-218ENST00000581021 FGAP02671 866 aa23.98■■□□□ 1.43
SS18-218ENST00000581021 EEF2P13639 858 aaKnown RBP23.98■■□□□ 1.43
SS18-218ENST00000581021 OSBPP22059 807 aa23.98■■□□□ 1.43
SS18-218ENST00000581021 USP14P54578 494 aa23.98■■□□□ 1.43
SS18-218ENST00000581021 PABPC4Q13310 644 aaKnown RBP eCLIP23.98■■□□□ 1.43
SS18-218ENST00000581021 MKNK2Q9HBH9 465 aa23.98■■□□□ 1.43
SS18-218ENST00000581021 TXNRD2Q9NNW7 524 aa23.98■■□□□ 1.43
SS18-218ENST00000581021 PTPN22Q9Y2R2 807 aa23.98■■□□□ 1.43
SS18-218ENST00000581021 PSMC4P43686 418 aa23.97■■□□□ 1.43
SS18-218ENST00000581021 HERVK_113P62684 666 aa23.97■■□□□ 1.43
SS18-218ENST00000581021 IRX3P78415 501 aaPredicted RBP23.97■■□□□ 1.43
SS18-218ENST00000581021 NBPF3Q9H094 633 aa23.97■■□□□ 1.43
SS18-218ENST00000581021 TMX2Q9Y320 296 aa23.97■■□□□ 1.43
SS18-218ENST00000581021 ZMYM6O95789 1325 aa23.96■■□□□ 1.43
SS18-218ENST00000581021 FAM110CQ1W6H9 321 aa23.96■■□□□ 1.43
SS18-218ENST00000581021 RPAP3Q9H6T3 665 aaPredicted RBP23.96■■□□□ 1.43
SS18-218ENST00000581021 KANSL2Q9H9L4 492 aa23.96■■□□□ 1.43
SS18-218ENST00000581021 ANAPC4Q9UJX5 808 aa23.96■■□□□ 1.43
SS18-218ENST00000581021 PLIN4Q96Q06 1357 aa23.95■■□□□ 1.42
SS18-218ENST00000581021 CATSPERGQ6ZRH7 1159 aa23.95■■□□□ 1.42
SS18-218ENST00000581021 SPICE1Q8N0Z3 855 aa23.95■■□□□ 1.42
SS18-218ENST00000581021 NKX2-3Q8TAU0 364 aa23.95■■□□□ 1.42
SS18-218ENST00000581021 PTCH2Q9Y6C5 1203 aa23.95■■□□□ 1.42
SS18-218ENST00000581021 CCDC85CA6NKD9 419 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 USP17L15C9J2P7 530 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 USP17L13C9JLJ4 530 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 USP17L11C9JVI0 530 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 USP17L18D6R9N7 530 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 USP17L22D6RA61 530 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 USP17L17D6RBQ6 530 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 USP17L19D6RCP7 530 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 USP17L20D6RJB6 530 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 HIP1O00291 1037 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 GCLCP48506 637 aaPredicted RBP23.94■■□□□ 1.42
SS18-218ENST00000581021 ATP2B2Q01814 1243 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 USP17L24Q0WX57 530 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 FAM47AQ5JRC9 791 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 VCPKMTQ9H867 229 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 ARHGEF10LQ9HCE6 1279 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 RBPJLQ9UBG7 517 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 MORF4L1Q9UBU8 362 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 MGAMO43451 1857 aa23.94■■□□□ 1.42
SS18-218ENST00000581021 RLFQ13129 1914 aa23.93■■□□□ 1.42
SS18-218ENST00000581021 CHMLP26374 656 aa23.93■■□□□ 1.42
SS18-218ENST00000581021 HAND2P61296 217 aa23.93■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 181.8 ms