RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 HSP90AB4PQ58FF6 505 aa25.62■■□□□ 1.69
VPS53-216ENST00000574029 PLEKHH3Q7Z736 793 aa25.62■■□□□ 1.69
VPS53-216ENST00000574029 CCAR1Q8IX12 1150 aaKnown RBP25.62■■□□□ 1.69
VPS53-216ENST00000574029 FEZ1Q99689 392 aa25.62■■□□□ 1.69
VPS53-216ENST00000574029 KIAA1683Q9H0B3 1180 aa25.62■■□□□ 1.69
VPS53-216ENST00000574029 RABGAP1Q9Y3P9 1069 aa25.62■■□□□ 1.69
VPS53-216ENST00000574029 ZKSCAN1P17029 563 aaPredicted RBP25.61■■□□□ 1.69
VPS53-216ENST00000574029 SHMT1P34896 483 aa25.61■■□□□ 1.69
VPS53-216ENST00000574029 RGS2P41220 211 aa25.61■■□□□ 1.69
VPS53-216ENST00000574029 PLCD1P51178 756 aa25.61■■□□□ 1.69
VPS53-216ENST00000574029 USP14P54578 494 aa25.61■■□□□ 1.69
VPS53-216ENST00000574029 RAB3GAP1Q15042 981 aa25.61■■□□□ 1.69
VPS53-216ENST00000574029 TTF1Q15361 905 aaPredicted RBP25.61■■□□□ 1.69
VPS53-216ENST00000574029 ZYXQ15942 572 aaKnown RBP25.61■■□□□ 1.69
VPS53-216ENST00000574029 ABCB5Q2M3G0 1257 aa25.61■■□□□ 1.69
VPS53-216ENST00000574029 RHPN1Q8TCX5 695 aa25.61■■□□□ 1.69
VPS53-216ENST00000574029 C11orf49Q9H6J7 331 aa25.61■■□□□ 1.69
VPS53-216ENST00000574029 IL1RAPL2Q9NP60 686 aa25.61■■□□□ 1.69
VPS53-216ENST00000574029 STAP2Q9UGK3 403 aa25.61■■□□□ 1.69
VPS53-216ENST00000574029 CNMDO75829 334 aa25.6■■□□□ 1.69
VPS53-216ENST00000574029 CACNB2Q08289 660 aaPredicted RBP25.6■■□□□ 1.69
VPS53-216ENST00000574029 CATSPERGQ6ZRH7 1159 aa25.6■■□□□ 1.69
VPS53-216ENST00000574029 RANBP2P49792 3224 aaKnown RBP25.6■■□□□ 1.69
VPS53-216ENST00000574029 MAGEB6P1A0A0J9YX57 407 aa25.59■■□□□ 1.69
VPS53-216ENST00000574029 VCAM1P19320 739 aa25.59■■□□□ 1.69
VPS53-216ENST00000574029 CCL14Q16627 93 aa25.59■■□□□ 1.69
VPS53-216ENST00000574029 C7orf61Q8IZ16 206 aa25.59■■□□□ 1.69
VPS53-216ENST00000574029 ACER1Q8TDN7 264 aa25.59■■□□□ 1.69
VPS53-216ENST00000574029 APBA2Q99767 749 aa25.59■■□□□ 1.69
VPS53-216ENST00000574029 CABP5Q9NP86 173 aa25.59■■□□□ 1.69
VPS53-216ENST00000574029 ZBED9Q6R2W3 1325 aa25.59■■□□□ 1.69
VPS53-216ENST00000574029 SZT2Q5T011 3432 aa25.58■■□□□ 1.69
VPS53-216ENST00000574029 PDE6AP16499 860 aa25.58■■□□□ 1.69
VPS53-216ENST00000574029 GUCY1A2P33402 732 aa25.58■■□□□ 1.69
VPS53-216ENST00000574029 GABPAQ06546 454 aa25.58■■□□□ 1.69
VPS53-216ENST00000574029 LBX2Q6XYB7 198 aa25.58■■□□□ 1.69
VPS53-216ENST00000574029 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.58■■□□□ 1.69
VPS53-216ENST00000574029 GDF15Q99988 308 aa25.58■■□□□ 1.69
VPS53-216ENST00000574029 BMP8BP34820 402 aa25.57■■□□□ 1.68
VPS53-216ENST00000574029 CCNA1P78396 465 aa25.57■■□□□ 1.68
VPS53-216ENST00000574029 SLC9C2Q5TAH2 1124 aa25.57■■□□□ 1.68
VPS53-216ENST00000574029 POLR3DP05423 398 aaPredicted RBP25.56■■□□□ 1.68
VPS53-216ENST00000574029 CCND3P30281 292 aaPredicted RBP25.56■■□□□ 1.68
VPS53-216ENST00000574029 MAP2K5Q13163 448 aa25.56■■□□□ 1.68
VPS53-216ENST00000574029 LHX8Q68G74 356 aa25.56■■□□□ 1.68
VPS53-216ENST00000574029 CLASRPQ8N2M8 674 aaKnown RBP25.56■■□□□ 1.68
VPS53-216ENST00000574029 CRNKL1Q9BZJ0 848 aaKnown RBP25.56■■□□□ 1.68
VPS53-216ENST00000574029 FRMPD3Q5JV73 1810 aa25.56■■□□□ 1.68
VPS53-216ENST00000574029 GLRX3O76003 335 aaKnown RBP25.55■■□□□ 1.68
VPS53-216ENST00000574029 MS4A1P11836 297 aa25.55■■□□□ 1.68
VPS53-216ENST00000574029 RPAP2Q8IXW5 612 aaPredicted RBP25.55■■□□□ 1.68
VPS53-216ENST00000574029 KIF1BPQ96EK5 621 aa25.55■■□□□ 1.68
VPS53-216ENST00000574029 EDC3Q96F86 508 aaKnown RBP25.55■■□□□ 1.68
VPS53-216ENST00000574029 CWC22Q9HCG8 908 aaKnown RBP25.55■■□□□ 1.68
VPS53-216ENST00000574029 ZMYND8Q9ULU4 1186 aaPredicted RBP25.55■■□□□ 1.68
VPS53-216ENST00000574029 PFASO15067 1338 aa25.55■■□□□ 1.68
VPS53-216ENST00000574029 ZNF532Q9HCE3 1301 aa25.55■■□□□ 1.68
VPS53-216ENST00000574029 TCRBV5S4A2TA0A5A2 114 aa25.54■■□□□ 1.68
VPS53-216ENST00000574029 SOX1O00570 391 aaPredicted RBP25.54■■□□□ 1.68
VPS53-216ENST00000574029 COL6A1P12109 1028 aa25.54■■□□□ 1.68
VPS53-216ENST00000574029 SEPT2Q15019 361 aa25.54■■□□□ 1.68
VPS53-216ENST00000574029 RPAP3Q9H6T3 665 aaPredicted RBP25.54■■□□□ 1.68
VPS53-216ENST00000574029 MCM9Q9NXL9 1143 aa25.54■■□□□ 1.68
VPS53-216ENST00000574029 BTBD7Q9P203 1132 aa25.54■■□□□ 1.68
VPS53-216ENST00000574029 SLC15A5A6NIM6 579 aa25.53■■□□□ 1.68
VPS53-216ENST00000574029 SPDYE16A6NNV3 312 aaPredicted RBP25.53■■□□□ 1.68
VPS53-216ENST00000574029 GOLIM4O00461 696 aa25.53■■□□□ 1.68
VPS53-216ENST00000574029 PTPREP23469 700 aa25.53■■□□□ 1.68
VPS53-216ENST00000574029 EVX2Q03828 476 aa25.53■■□□□ 1.68
VPS53-216ENST00000574029 SIRT2Q8IXJ6 389 aa25.52■■□□□ 1.68
VPS53-216ENST00000574029 SDR42E1Q8WUS8 393 aa25.52■■□□□ 1.68
VPS53-216ENST00000574029 DNAJC2Q99543 621 aaKnown RBP25.52■■□□□ 1.68
VPS53-216ENST00000574029 DCP1AQ9NPI6 582 aaPredicted RBP25.52■■□□□ 1.68
VPS53-216ENST00000574029 A0A1W2PRG0 241 aa25.51■■□□□ 1.67
VPS53-216ENST00000574029 APBB1O00213 710 aa25.51■■□□□ 1.67
VPS53-216ENST00000574029 HMMRO75330 724 aa25.51■■□□□ 1.67
VPS53-216ENST00000574029 HOXC6P09630 235 aa25.51■■□□□ 1.67
VPS53-216ENST00000574029 IFIT2P09913 472 aaKnown RBP25.51■■□□□ 1.67
VPS53-216ENST00000574029 LCORLQ8N3X6 602 aa25.51■■□□□ 1.67
VPS53-216ENST00000574029 LRCH3Q96II8 777 aa25.51■■□□□ 1.67
VPS53-216ENST00000574029 ZBTB40Q9NUA8 1239 aa25.51■■□□□ 1.67
VPS53-216ENST00000574029 FLRT1Q9NZU1 646 aa25.51■■□□□ 1.67
VPS53-216ENST00000574029 A0A0G2JMZ2 1700 aa25.5■■□□□ 1.67
VPS53-216ENST00000574029 SYN1P17600 705 aa25.5■■□□□ 1.67
VPS53-216ENST00000574029 RLFQ13129 1914 aa25.5■■□□□ 1.67
VPS53-216ENST00000574029 GRB14Q14449 540 aa25.5■■□□□ 1.67
VPS53-216ENST00000574029 WDR78Q5VTH9 848 aa25.5■■□□□ 1.67
VPS53-216ENST00000574029 MFSD14CQ5VZR4 134 aa25.5■■□□□ 1.67
VPS53-216ENST00000574029 DDX19BQ9UMR2 479 aa25.5■■□□□ 1.67
VPS53-216ENST00000574029 MYH8P13535 1937 aa25.49■■□□□ 1.67
VPS53-216ENST00000574029 MPHOSPH10O00566 681 aaKnown RBP25.49■■□□□ 1.67
VPS53-216ENST00000574029 RAB11FIP3O75154 756 aa25.49■■□□□ 1.67
VPS53-216ENST00000574029 IVNS1ABPQ9Y6Y0 642 aa25.49■■□□□ 1.67
VPS53-216ENST00000574029 ZNF236Q9UL36 1845 aa25.49■■□□□ 1.67
VPS53-216ENST00000574029 CYP2D6P10635 497 aa25.48■■□□□ 1.67
VPS53-216ENST00000574029 MAGEA10P43363 369 aaPredicted RBP25.48■■□□□ 1.67
VPS53-216ENST00000574029 COG2Q14746 738 aa25.48■■□□□ 1.67
VPS53-216ENST00000574029 NPLOC4Q8TAT6 608 aa25.48■■□□□ 1.67
VPS53-216ENST00000574029 ARMT1Q9H993 441 aa25.48■■□□□ 1.67
VPS53-216ENST00000574029 HOXC10Q9NYD6 342 aa25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms