RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 PANK1Q8TE04 598 aa15.78■□□□□ 0.12
SF3B3-202ENST00000562722 EHD4Q9H223 541 aa15.78■□□□□ 0.12
SF3B3-202ENST00000562722 IL1RAPL2Q9NP60 686 aa15.78■□□□□ 0.12
SF3B3-202ENST00000562722 MYO5AQ9Y4I1 1855 aaKnown RBP15.78■□□□□ 0.12
SF3B3-202ENST00000562722 MAGEB6P1A0A0J9YX57 407 aa15.77■□□□□ 0.12
SF3B3-202ENST00000562722 GLRX3O76003 335 aaKnown RBP15.77■□□□□ 0.12
SF3B3-202ENST00000562722 CCNA1P78396 465 aa15.77■□□□□ 0.12
SF3B3-202ENST00000562722 HSP90AB4PQ58FF6 505 aa15.77■□□□□ 0.12
SF3B3-202ENST00000562722 APBA2Q99767 749 aa15.77■□□□□ 0.12
SF3B3-202ENST00000562722 OGDHLQ9ULD0 1010 aa15.77■□□□□ 0.12
SF3B3-202ENST00000562722 MPHOSPH10O00566 681 aaKnown RBP15.76■□□□□ 0.11
SF3B3-202ENST00000562722 SYN1P17600 705 aa15.76■□□□□ 0.11
SF3B3-202ENST00000562722 VCAM1P19320 739 aa15.76■□□□□ 0.11
SF3B3-202ENST00000562722 CACNB2Q08289 660 aaPredicted RBP15.76■□□□□ 0.11
SF3B3-202ENST00000562722 TTF1Q15361 905 aaPredicted RBP15.76■□□□□ 0.11
SF3B3-202ENST00000562722 CCL14Q16627 93 aa15.76■□□□□ 0.11
SF3B3-202ENST00000562722 MAP3K21Q5TCX8 1036 aa15.76■□□□□ 0.11
SF3B3-202ENST00000562722 TMED8Q6PL24 325 aaPredicted RBP15.76■□□□□ 0.11
SF3B3-202ENST00000562722 C12orf42Q96LP6 360 aa15.76■□□□□ 0.11
SF3B3-202ENST00000562722 DNAJC2Q99543 621 aaKnown RBP15.76■□□□□ 0.11
SF3B3-202ENST00000562722 CRNKL1Q9BZJ0 848 aaKnown RBP15.76■□□□□ 0.11
SF3B3-202ENST00000562722 RABGAP1Q9Y3P9 1069 aa15.76■□□□□ 0.11
SF3B3-202ENST00000562722 PLXNB2O15031 1838 aa15.75■□□□□ 0.11
SF3B3-202ENST00000562722 MYH1P12882 1939 aa15.75■□□□□ 0.11
SF3B3-202ENST00000562722 CCND3P30281 292 aaPredicted RBP15.75■□□□□ 0.11
SF3B3-202ENST00000562722 PLCD1P51178 756 aa15.75■□□□□ 0.11
SF3B3-202ENST00000562722 MAP2K5Q13163 448 aa15.75■□□□□ 0.11
SF3B3-202ENST00000562722 MORN1Q5T089 497 aa15.75■□□□□ 0.11
SF3B3-202ENST00000562722 SLC9C2Q5TAH2 1124 aa15.75■□□□□ 0.11
SF3B3-202ENST00000562722 CLASRPQ8N2M8 674 aaKnown RBP15.75■□□□□ 0.11
SF3B3-202ENST00000562722 RHPN1Q8TCX5 695 aa15.75■□□□□ 0.11
SF3B3-202ENST00000562722 ACER1Q8TDN7 264 aa15.75■□□□□ 0.11
SF3B3-202ENST00000562722 RIOK1Q9BRS2 568 aaKnown RBP15.75■□□□□ 0.11
SF3B3-202ENST00000562722 KIAA1683Q9H0B3 1180 aa15.75■□□□□ 0.11
SF3B3-202ENST00000562722 MCM9Q9NXL9 1143 aa15.75■□□□□ 0.11
SF3B3-202ENST00000562722 IVNS1ABPQ9Y6Y0 642 aa15.75■□□□□ 0.11
SF3B3-202ENST00000562722 DDX60LQ5H9U9 1706 aaKnown RBP15.74■□□□□ 0.11
SF3B3-202ENST00000562722 GOLIM4O00461 696 aa15.74■□□□□ 0.11
SF3B3-202ENST00000562722 SOX1O00570 391 aaPredicted RBP15.74■□□□□ 0.11
SF3B3-202ENST00000562722 IFIT2P09913 472 aaKnown RBP15.74■□□□□ 0.11
SF3B3-202ENST00000562722 PDE6AP16499 860 aa15.74■□□□□ 0.11
SF3B3-202ENST00000562722 SHMT1P34896 483 aa15.74■□□□□ 0.11
SF3B3-202ENST00000562722 MNX1P50219 401 aaPredicted RBP15.74■□□□□ 0.11
SF3B3-202ENST00000562722 MFSD14CQ5VZR4 134 aa15.74■□□□□ 0.11
SF3B3-202ENST00000562722 CATSPERGQ6ZRH7 1159 aa15.74■□□□□ 0.11
SF3B3-202ENST00000562722 MIER1Q8N108 512 aa15.74■□□□□ 0.11
SF3B3-202ENST00000562722 USP6NLQ92738 828 aa15.74■□□□□ 0.11
SF3B3-202ENST00000562722 EDC3Q96F86 508 aaKnown RBP15.74■□□□□ 0.11
SF3B3-202ENST00000562722 LRCH3Q96II8 777 aa15.74■□□□□ 0.11
SF3B3-202ENST00000562722 RPAP3Q9H6T3 665 aaPredicted RBP15.74■□□□□ 0.11
SF3B3-202ENST00000562722 SZT2Q5T011 3432 aa15.73■□□□□ 0.11
SF3B3-202ENST00000562722 CNMDO75829 334 aa15.73■□□□□ 0.11
SF3B3-202ENST00000562722 SEPT2Q15019 361 aa15.73■□□□□ 0.11
SF3B3-202ENST00000562722 POTEEQ6S8J3 1075 aa15.73■□□□□ 0.11
SF3B3-202ENST00000562722 RANBP2P49792 3224 aaKnown RBP15.73■□□□□ 0.11
SF3B3-202ENST00000562722 PFASO15067 1338 aa15.72■□□□□ 0.11
SF3B3-202ENST00000562722 ZNF532Q9HCE3 1301 aa15.72■□□□□ 0.11
SF3B3-202ENST00000562722 SLC15A5A6NIM6 579 aa15.72■□□□□ 0.11
SF3B3-202ENST00000562722 HMMRO75330 724 aa15.72■□□□□ 0.11
SF3B3-202ENST00000562722 MS4A1P11836 297 aa15.72■□□□□ 0.11
SF3B3-202ENST00000562722 CNGA1P29973 690 aa15.72■□□□□ 0.11
SF3B3-202ENST00000562722 MAGEA10P43363 369 aaPredicted RBP15.72■□□□□ 0.11
SF3B3-202ENST00000562722 ATP2B2Q01814 1243 aa15.72■□□□□ 0.11
SF3B3-202ENST00000562722 KIF1BPQ96EK5 621 aa15.72■□□□□ 0.11
SF3B3-202ENST00000562722 GDF15Q99988 308 aa15.72■□□□□ 0.11
SF3B3-202ENST00000562722 TANGO6Q9C0B7 1094 aa15.72■□□□□ 0.11
SF3B3-202ENST00000562722 ALPK3Q96L96 1907 aa15.72■□□□□ 0.11
SF3B3-202ENST00000562722 SPDYE16A6NNV3 312 aaPredicted RBP15.71■□□□□ 0.11
SF3B3-202ENST00000562722 PTPREP23469 700 aa15.71■□□□□ 0.11
SF3B3-202ENST00000562722 BMP8BP34820 402 aa15.71■□□□□ 0.11
SF3B3-202ENST00000562722 LCORLQ8N3X6 602 aa15.71■□□□□ 0.11
SF3B3-202ENST00000562722 SDR42E1Q8WUS8 393 aa15.71■□□□□ 0.11
SF3B3-202ENST00000562722 UBE2OQ9C0C9 1292 aaKnown RBP15.71■□□□□ 0.11
SF3B3-202ENST00000562722 BTBD7Q9P203 1132 aa15.71■□□□□ 0.11
SF3B3-202ENST00000562722 ZBED9Q6R2W3 1325 aa15.7■□□□□ 0.1
SF3B3-202ENST00000562722 NAV1Q8NEY1 1877 aa15.7■□□□□ 0.1
SF3B3-202ENST00000562722 CYP2D6P10635 497 aa15.7■□□□□ 0.1
SF3B3-202ENST00000562722 GUCY1A2P33402 732 aa15.7■□□□□ 0.1
SF3B3-202ENST00000562722 EVX2Q03828 476 aa15.7■□□□□ 0.1
SF3B3-202ENST00000562722 LHX8Q68G74 356 aa15.7■□□□□ 0.1
SF3B3-202ENST00000562722 LBX2Q6XYB7 198 aa15.7■□□□□ 0.1
SF3B3-202ENST00000562722 ARMT1Q9H993 441 aa15.7■□□□□ 0.1
SF3B3-202ENST00000562722 FLRT1Q9NZU1 646 aa15.7■□□□□ 0.1
SF3B3-202ENST00000562722 COL6A1P12109 1028 aa15.69■□□□□ 0.1
SF3B3-202ENST00000562722 GABPAQ06546 454 aa15.69■□□□□ 0.1
SF3B3-202ENST00000562722 GRB14Q14449 540 aa15.69■□□□□ 0.1
SF3B3-202ENST00000562722 COG2Q14746 738 aa15.69■□□□□ 0.1
SF3B3-202ENST00000562722 LRRC26Q2I0M4 334 aa15.69■□□□□ 0.1
SF3B3-202ENST00000562722 SAMD1Q6SPF0 538 aaPredicted RBP15.69■□□□□ 0.1
SF3B3-202ENST00000562722 DPP9Q86TI2 863 aa15.69■□□□□ 0.1
SF3B3-202ENST00000562722 RPAP2Q8IXW5 612 aaPredicted RBP15.69■□□□□ 0.1
SF3B3-202ENST00000562722 SLC44A5Q8NCS7 719 aa15.69■□□□□ 0.1
SF3B3-202ENST00000562722 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.69■□□□□ 0.1
SF3B3-202ENST00000562722 DCP1AQ9NPI6 582 aaPredicted RBP15.69■□□□□ 0.1
SF3B3-202ENST00000562722 HOXC10Q9NYD6 342 aa15.69■□□□□ 0.1
SF3B3-202ENST00000562722 COG6Q9Y2V7 657 aa15.69■□□□□ 0.1
SF3B3-202ENST00000562722 A0A1W2PRG0 241 aa15.68■□□□□ 0.1
SF3B3-202ENST00000562722 CYP2C19P33261 490 aa15.68■□□□□ 0.1
SF3B3-202ENST00000562722 PLS1Q14651 629 aa15.68■□□□□ 0.1
SF3B3-202ENST00000562722 DIEXFQ68CQ4 756 aaKnown RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms