RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 RNF41Q9H4P4 317 aaPredicted RBP15.44■□□□□ 0.06
NEDD8-208ENST00000560427 KANSL2Q9H9L4 492 aa15.44■□□□□ 0.06
NEDD8-208ENST00000560427 TMOD4Q9NZQ9 345 aa15.44■□□□□ 0.06
NEDD8-208ENST00000560427 AGTPBP1Q9UPW5 1226 aa15.44■□□□□ 0.06
NEDD8-208ENST00000560427 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.44■□□□□ 0.06
NEDD8-208ENST00000560427 LAMA4Q16363 1823 aa15.43■□□□□ 0.06
NEDD8-208ENST00000560427 PTPRFP10586 1907 aa15.43■□□□□ 0.06
NEDD8-208ENST00000560427 BTBD19C9JJ37 291 aa15.43■□□□□ 0.06
NEDD8-208ENST00000560427 ZNF213O14771 459 aa15.43■□□□□ 0.06
NEDD8-208ENST00000560427 ORC4O43929 436 aa15.43■□□□□ 0.06
NEDD8-208ENST00000560427 HSPA8P11142 646 aaKnown RBP15.43■□□□□ 0.06
NEDD8-208ENST00000560427 HMGCS2P54868 508 aa15.43■□□□□ 0.06
NEDD8-208ENST00000560427 ICA1Q05084 483 aa15.43■□□□□ 0.06
NEDD8-208ENST00000560427 SEPT2Q15019 361 aa15.43■□□□□ 0.06
NEDD8-208ENST00000560427 IMMTQ16891 758 aaKnown RBP15.43■□□□□ 0.06
NEDD8-208ENST00000560427 USP17L2Q6R6M4 530 aa15.43■□□□□ 0.06
NEDD8-208ENST00000560427 FAM43AQ8N2R8 423 aa15.43■□□□□ 0.06
NEDD8-208ENST00000560427 C12orf42Q96LP6 360 aa15.43■□□□□ 0.06
NEDD8-208ENST00000560427 FEZ1Q99689 392 aa15.43■□□□□ 0.06
NEDD8-208ENST00000560427 ESYT1Q9BSJ8 1104 aa15.43■□□□□ 0.06
NEDD8-208ENST00000560427 ZFYVE28Q9HCC9 887 aa15.43■□□□□ 0.06
NEDD8-208ENST00000560427 ARHGEF10LQ9HCE6 1279 aa15.43■□□□□ 0.06
NEDD8-208ENST00000560427 SYNPO2Q9UMS6 1093 aa15.43■□□□□ 0.06
NEDD8-208ENST00000560427 GREB1LQ9C091 1923 aaPredicted RBP15.43■□□□□ 0.06
NEDD8-208ENST00000560427 PDHXO00330 501 aa15.42■□□□□ 0.06
NEDD8-208ENST00000560427 TSPY3P0CV98 308 aa15.42■□□□□ 0.06
NEDD8-208ENST00000560427 TSPY8P0CW00 308 aa15.42■□□□□ 0.06
NEDD8-208ENST00000560427 TAF1CQ15572 869 aaPredicted RBP15.42■□□□□ 0.06
NEDD8-208ENST00000560427 GPAT2Q6NUI2 795 aa15.42■□□□□ 0.06
NEDD8-208ENST00000560427 GADL1Q6ZQY3 521 aa15.42■□□□□ 0.06
NEDD8-208ENST00000560427 KIAA1211Q6ZU35 1233 aa15.42■□□□□ 0.06
NEDD8-208ENST00000560427 STAG1Q8WVM7 1258 aa15.42■□□□□ 0.06
NEDD8-208ENST00000560427 PARK7Q99497 189 aaKnown RBP15.42■□□□□ 0.06
NEDD8-208ENST00000560427 PRDM10Q9NQV6 1147 aa15.42■□□□□ 0.06
NEDD8-208ENST00000560427 PNMA3Q9UL41 463 aa15.42■□□□□ 0.06
NEDD8-208ENST00000560427 U3KPZ7 1027 aaPredicted RBP15.42■□□□□ 0.06
NEDD8-208ENST00000560427 PRDM1O75626 825 aa15.41■□□□□ 0.06
NEDD8-208ENST00000560427 CTDSPL2Q05D32 466 aa15.41■□□□□ 0.06
NEDD8-208ENST00000560427 CRHR2Q13324 411 aa15.41■□□□□ 0.06
NEDD8-208ENST00000560427 AKNAD1Q5T1N1 836 aa15.41■□□□□ 0.06
NEDD8-208ENST00000560427 NEDD1Q8NHV4 660 aa15.41■□□□□ 0.06
NEDD8-208ENST00000560427 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.41■□□□□ 0.06
NEDD8-208ENST00000560427 TMX2Q9Y320 296 aa15.41■□□□□ 0.06
NEDD8-208ENST00000560427 PCNTO95613 3336 aa15.41■□□□□ 0.06
NEDD8-208ENST00000560427 IGKV6D-41A0A0C4DH26 115 aa15.4■□□□□ 0.06
NEDD8-208ENST00000560427 HOXA7P31268 230 aaPredicted RBP15.4■□□□□ 0.06
NEDD8-208ENST00000560427 MFSD6Q6ZSS7 791 aa15.4■□□□□ 0.06
NEDD8-208ENST00000560427 STK11IPQ8N1F8 1099 aa15.4■□□□□ 0.06
NEDD8-208ENST00000560427 LPAR1Q92633 364 aa15.4■□□□□ 0.06
NEDD8-208ENST00000560427 NYAP2Q9P242 653 aa15.4■□□□□ 0.06
NEDD8-208ENST00000560427 TSPY2A6NKD2 308 aa15.39■□□□□ 0.05
NEDD8-208ENST00000560427 GPR25O00155 361 aa15.39■□□□□ 0.05
NEDD8-208ENST00000560427 TLR2O60603 784 aa15.39■□□□□ 0.05
NEDD8-208ENST00000560427 TBC1D8O95759 1140 aa15.39■□□□□ 0.05
NEDD8-208ENST00000560427 OSBPP22059 807 aa15.39■□□□□ 0.05
NEDD8-208ENST00000560427 LBX1P52954 281 aa15.39■□□□□ 0.05
NEDD8-208ENST00000560427 HAND2P61296 217 aa15.39■□□□□ 0.05
NEDD8-208ENST00000560427 TFAP4Q01664 338 aa15.39■□□□□ 0.05
NEDD8-208ENST00000560427 TBC1D10CQ8IV04 446 aa15.39■□□□□ 0.05
NEDD8-208ENST00000560427 ACER1Q8TDN7 264 aa15.39■□□□□ 0.05
NEDD8-208ENST00000560427 ESR2Q92731 530 aa15.39■□□□□ 0.05
NEDD8-208ENST00000560427 MAP4K1Q92918 833 aa15.39■□□□□ 0.05
NEDD8-208ENST00000560427 NBPF3Q9H094 633 aa15.39■□□□□ 0.05
NEDD8-208ENST00000560427 CNNM2Q9H8M5 875 aa15.39■□□□□ 0.05
NEDD8-208ENST00000560427 A0A1W2PRG0 241 aa15.38■□□□□ 0.05
NEDD8-208ENST00000560427 RANBP6O60518 1105 aaKnown RBP15.38■□□□□ 0.05
NEDD8-208ENST00000560427 TTLL1O95922 423 aa15.38■□□□□ 0.05
NEDD8-208ENST00000560427 EEF2P13639 858 aaKnown RBP15.38■□□□□ 0.05
NEDD8-208ENST00000560427 VCAM1P19320 739 aa15.38■□□□□ 0.05
NEDD8-208ENST00000560427 PTH1RQ03431 593 aa15.38■□□□□ 0.05
NEDD8-208ENST00000560427 TREML2Q5T2D2 321 aa15.38■□□□□ 0.05
NEDD8-208ENST00000560427 SIAH1Q8IUQ4 282 aa15.38■□□□□ 0.05
NEDD8-208ENST00000560427 GTF3C2Q8WUA4 911 aaPredicted RBP15.38■□□□□ 0.05
NEDD8-208ENST00000560427 CEP95Q96GE4 821 aa15.38■□□□□ 0.05
NEDD8-208ENST00000560427 VCPKMTQ9H867 229 aa15.38■□□□□ 0.05
NEDD8-208ENST00000560427 EMILIN3Q9NT22 766 aa15.38■□□□□ 0.05
NEDD8-208ENST00000560427 TCP11L1Q9NUJ3 509 aa15.38■□□□□ 0.05
NEDD8-208ENST00000560427 MTMR4Q9NYA4 1195 aa15.38■□□□□ 0.05
NEDD8-208ENST00000560427 TSKSQ9UJT2 592 aa15.38■□□□□ 0.05
NEDD8-208ENST00000560427 ADGRA2Q96PE1 1338 aa15.38■□□□□ 0.05
NEDD8-208ENST00000560427 NOVP48745 357 aa15.37■□□□□ 0.05
NEDD8-208ENST00000560427 SMCR8Q8TEV9 937 aaPredicted RBP15.37■□□□□ 0.05
NEDD8-208ENST00000560427 MKL1Q969V6 931 aa15.37■□□□□ 0.05
NEDD8-208ENST00000560427 KRT23Q9C075 422 aa15.37■□□□□ 0.05
NEDD8-208ENST00000560427 LSG1Q9H089 658 aaKnown RBP15.37■□□□□ 0.05
NEDD8-208ENST00000560427 GOPCQ9HD26 462 aa15.37■□□□□ 0.05
NEDD8-208ENST00000560427 ANO2Q9NQ90 1003 aa15.37■□□□□ 0.05
NEDD8-208ENST00000560427 TOMM22Q9NS69 142 aa15.37■□□□□ 0.05
NEDD8-208ENST00000560427 USP17L15C9J2P7 530 aa15.36■□□□□ 0.05
NEDD8-208ENST00000560427 USP17L13C9JLJ4 530 aa15.36■□□□□ 0.05
NEDD8-208ENST00000560427 USP17L11C9JVI0 530 aa15.36■□□□□ 0.05
NEDD8-208ENST00000560427 USP17L18D6R9N7 530 aa15.36■□□□□ 0.05
NEDD8-208ENST00000560427 USP17L22D6RA61 530 aa15.36■□□□□ 0.05
NEDD8-208ENST00000560427 USP17L17D6RBQ6 530 aa15.36■□□□□ 0.05
NEDD8-208ENST00000560427 USP17L19D6RCP7 530 aa15.36■□□□□ 0.05
NEDD8-208ENST00000560427 USP17L20D6RJB6 530 aa15.36■□□□□ 0.05
NEDD8-208ENST00000560427 WDR46O15213 610 aaKnown RBP15.36■□□□□ 0.05
NEDD8-208ENST00000560427 FKTNO75072 461 aa15.36■□□□□ 0.05
NEDD8-208ENST00000560427 CYP21A2P08686 494 aa15.36■□□□□ 0.05
NEDD8-208ENST00000560427 GCLCP48506 637 aaPredicted RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms