RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 TXNDC11Q6PKC3 985 aa7.73□□□□□ -1.17
SCFD1-208ENST00000553278 MCATQ8IVS2 390 aaKnown RBP7.73□□□□□ -1.17
SCFD1-208ENST00000553278 WDR75Q8IWA0 830 aaKnown RBP7.73□□□□□ -1.17
SCFD1-208ENST00000553278 SLFN12Q8IYM2 578 aa7.73□□□□□ -1.17
SCFD1-208ENST00000553278 PPM1KQ8N3J5 372 aa7.73□□□□□ -1.17
SCFD1-208ENST00000553278 AFAP1L2Q8N4X5 818 aa7.73□□□□□ -1.17
SCFD1-208ENST00000553278 ELOA3Q8NG57 546 aa7.73□□□□□ -1.17
SCFD1-208ENST00000553278 RIN3Q8TB24 985 aa7.73□□□□□ -1.17
SCFD1-208ENST00000553278 SMARCC1Q92922 1105 aaPredicted RBP7.73□□□□□ -1.17
SCFD1-208ENST00000553278 PPP1R14AQ96A00 147 aa7.73□□□□□ -1.17
SCFD1-208ENST00000553278 SLC6A18Q96N87 628 aa7.73□□□□□ -1.17
SCFD1-208ENST00000553278 CLUHP3Q96NS8 147 aa7.73□□□□□ -1.17
SCFD1-208ENST00000553278 SUCOQ9UBS9 1254 aaKnown RBP7.73□□□□□ -1.17
SCFD1-208ENST00000553278 NSFL1CQ9UNZ2 370 aaKnown RBP7.73□□□□□ -1.17
SCFD1-208ENST00000553278 CSADQ9Y600 493 aa7.73□□□□□ -1.17
SCFD1-208ENST00000553278 KIF3BO15066 747 aa7.72□□□□□ -1.17
SCFD1-208ENST00000553278 TP53P04637 393 aaPredicted RBP7.72□□□□□ -1.17
SCFD1-208ENST00000553278 NFE2Q16621 373 aaPredicted RBP7.72□□□□□ -1.17
SCFD1-208ENST00000553278 VWA5B2Q8N398 1253 aa7.72□□□□□ -1.17
SCFD1-208ENST00000553278 NUDT8Q8WV74 236 aa7.72□□□□□ -1.17
SCFD1-208ENST00000553278 WDR89Q96FK6 387 aaPredicted RBP7.72□□□□□ -1.17
SCFD1-208ENST00000553278 MDFIQ99750 246 aa7.72□□□□□ -1.17
SCFD1-208ENST00000553278 USP26Q9BXU7 913 aa7.72□□□□□ -1.17
SCFD1-208ENST00000553278 KLF15Q9UIH9 416 aa7.72□□□□□ -1.17
SCFD1-208ENST00000553278 RGS13O14921 159 aa7.71□□□□□ -1.18
SCFD1-208ENST00000553278 RASGRP1O95267 797 aa7.71□□□□□ -1.18
SCFD1-208ENST00000553278 FGFR1P11362 822 aa7.71□□□□□ -1.18
SCFD1-208ENST00000553278 GBP1P32455 592 aa7.71□□□□□ -1.18
SCFD1-208ENST00000553278 PPP2R2AP63151 447 aa7.71□□□□□ -1.18
SCFD1-208ENST00000553278 PPP2R5AQ15172 486 aa7.71□□□□□ -1.18
SCFD1-208ENST00000553278 YOD1Q5VVQ6 348 aaPredicted RBP7.71□□□□□ -1.18
SCFD1-208ENST00000553278 CCSAPQ6IQ19 270 aaPredicted RBP7.71□□□□□ -1.18
SCFD1-208ENST00000553278 RAVER1Q8IY67 606 aaKnown RBP7.71□□□□□ -1.18
SCFD1-208ENST00000553278 KLHL23Q8NBE8 558 aa7.71□□□□□ -1.18
SCFD1-208ENST00000553278 LRRN4CLQ8ND94 238 aa7.71□□□□□ -1.18
SCFD1-208ENST00000553278 DDX1Q92499 740 aaKnown RBP7.71□□□□□ -1.18
SCFD1-208ENST00000553278 TMEM87BQ96K49 555 aa7.71□□□□□ -1.18
SCFD1-208ENST00000553278 HAUS7Q99871 368 aa7.71□□□□□ -1.18
SCFD1-208ENST00000553278 JPH1Q9HDC5 661 aaPredicted RBP7.71□□□□□ -1.18
SCFD1-208ENST00000553278 FAM86C1Q9NVL1 165 aa7.71□□□□□ -1.18
SCFD1-208ENST00000553278 TJP2Q9UDY2 1190 aa7.71□□□□□ -1.18
SCFD1-208ENST00000553278 STK17AQ9UEE5 414 aa7.71□□□□□ -1.18
SCFD1-208ENST00000553278 SFMBT1Q9UHJ3 866 aa7.71□□□□□ -1.18
SCFD1-208ENST00000553278 HIF3AQ9Y2N7 669 aa7.71□□□□□ -1.18
SCFD1-208ENST00000553278 NEURL1BA8MQ27 555 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 FANCGO15287 622 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 PRODHO43272 600 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 TSPAN6O43657 245 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 CLEC3AO75596 197 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 ITGAVP06756 1048 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 EPHX1P07099 455 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 CTSBP07858 339 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 PABPC1P11940 636 aaKnown RBP7.7□□□□□ -1.18
SCFD1-208ENST00000553278 SDSP20132 328 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 ERVK-24P63145 666 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 RING1Q06587 406 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 SUZ12Q15022 739 aaKnown RBP7.7□□□□□ -1.18
SCFD1-208ENST00000553278 GRIK5Q16478 980 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 TDRD10Q5VZ19 366 aaKnown RBP7.7□□□□□ -1.18
SCFD1-208ENST00000553278 SLC6A19Q695T7 634 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 NSMFQ6X4W1 530 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 NECAB2Q7Z6G3 386 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 PPFIBP1Q86W92 1011 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 HID1Q8IV36 788 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 TMEM192Q8IY95 271 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 LEO1Q8WVC0 666 aaPredicted RBP7.7□□□□□ -1.18
SCFD1-208ENST00000553278 PMM1Q92871 262 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 TSR2Q969E8 191 aaKnown RBP7.7□□□□□ -1.18
SCFD1-208ENST00000553278 CCDC74BQ96LY2 380 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 CARD10Q9BWT7 1032 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 GBP3Q9H0R5 595 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 SUSD2Q9UGT4 822 aa7.7□□□□□ -1.18
SCFD1-208ENST00000553278 ST8SIA5O15466 376 aa7.69□□□□□ -1.18
SCFD1-208ENST00000553278 AOC2O75106 756 aa7.69□□□□□ -1.18
SCFD1-208ENST00000553278 EIF3JO75822 258 aaKnown RBP7.69□□□□□ -1.18
SCFD1-208ENST00000553278 NPTXRO95502 500 aa7.69□□□□□ -1.18
SCFD1-208ENST00000553278 BAG6P46379 1132 aa7.69□□□□□ -1.18
SCFD1-208ENST00000553278 MAP2K3P46734 347 aa7.69□□□□□ -1.18
SCFD1-208ENST00000553278 PPM1JQ5JR12 505 aa7.69□□□□□ -1.18
SCFD1-208ENST00000553278 ZBTB37Q5TC79 503 aa7.69□□□□□ -1.18
SCFD1-208ENST00000553278 FCHSD1Q86WN1 690 aa7.69□□□□□ -1.18
SCFD1-208ENST00000553278 ZNF227Q86WZ6 799 aa7.69□□□□□ -1.18
SCFD1-208ENST00000553278 WFDC8Q8IUA0 241 aa7.69□□□□□ -1.18
SCFD1-208ENST00000553278 MRPL41Q8IXM3 137 aaKnown RBP7.69□□□□□ -1.18
SCFD1-208ENST00000553278 ZNF507Q8TCN5 953 aa7.69□□□□□ -1.18
SCFD1-208ENST00000553278 KLHDC7BQ96G42 594 aa7.69□□□□□ -1.18
SCFD1-208ENST00000553278 WDR18Q9BV38 432 aa7.69□□□□□ -1.18
SCFD1-208ENST00000553278 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.69□□□□□ -1.18
SCFD1-208ENST00000553278 AAASQ9NRG9 546 aa7.69□□□□□ -1.18
SCFD1-208ENST00000553278 RAD18Q9NS91 495 aa7.69□□□□□ -1.18
SCFD1-208ENST00000553278 GDF2Q9UK05 429 aaPredicted RBP7.69□□□□□ -1.18
SCFD1-208ENST00000553278 SPDYE3A6NKU9 549 aa7.68□□□□□ -1.18
SCFD1-208ENST00000553278 NOP56O00567 594 aaKnown RBP7.68□□□□□ -1.18
SCFD1-208ENST00000553278 EYA4O95677 639 aa7.68□□□□□ -1.18
SCFD1-208ENST00000553278 NLRP12P59046 1061 aa7.68□□□□□ -1.18
SCFD1-208ENST00000553278 ID3Q02535 119 aa7.68□□□□□ -1.18
SCFD1-208ENST00000553278 TRIM61Q5EBN2 209 aa7.68□□□□□ -1.18
SCFD1-208ENST00000553278 ADAT2Q7Z6V5 191 aaKnown RBP7.68□□□□□ -1.18
SCFD1-208ENST00000553278 SMC5Q8IY18 1101 aa7.68□□□□□ -1.18
SCFD1-208ENST00000553278 CCDC144CPQ8IYA2 1237 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms