RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 IQCA1Q86XH1 822 aa13.67□□□□□ -0.22
YBX3-213ENST00000542641 ERO1BQ86YB8 467 aa13.67□□□□□ -0.22
YBX3-213ENST00000542641 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.67□□□□□ -0.22
YBX3-213ENST00000542641 KANSL2Q9H9L4 492 aa13.67□□□□□ -0.22
YBX3-213ENST00000542641 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.67□□□□□ -0.22
YBX3-213ENST00000542641 ZHX2Q9Y6X8 837 aa13.67□□□□□ -0.22
YBX3-213ENST00000542641 TRPM7Q96QT4 1865 aa13.66□□□□□ -0.22
YBX3-213ENST00000542641 NMT2O60551 498 aa13.66□□□□□ -0.22
YBX3-213ENST00000542641 GUCY1A2P33402 732 aa13.66□□□□□ -0.22
YBX3-213ENST00000542641 RBM25P49756 843 aaKnown RBP13.66□□□□□ -0.22
YBX3-213ENST00000542641 ZNF157P51786 506 aaPredicted RBP13.66□□□□□ -0.22
YBX3-213ENST00000542641 ATP2B2Q01814 1243 aa13.66□□□□□ -0.22
YBX3-213ENST00000542641 RGMBQ6NW40 437 aa13.66□□□□□ -0.22
YBX3-213ENST00000542641 BLOC1S2Q6QNY1 142 aa13.66□□□□□ -0.22
YBX3-213ENST00000542641 CYB5R4Q7L1T6 521 aa13.66□□□□□ -0.22
YBX3-213ENST00000542641 CHST3Q7LGC8 479 aa13.66□□□□□ -0.22
YBX3-213ENST00000542641 CCDC84Q86UT8 332 aaPredicted RBP13.66□□□□□ -0.22
YBX3-213ENST00000542641 MB21D2Q8IYB1 491 aaPredicted RBP13.66□□□□□ -0.22
YBX3-213ENST00000542641 OPTNQ96CV9 577 aa13.66□□□□□ -0.22
YBX3-213ENST00000542641 ZKSCAN3Q9BRR0 538 aa13.66□□□□□ -0.22
YBX3-213ENST00000542641 UBAC1Q9BSL1 405 aa13.66□□□□□ -0.22
YBX3-213ENST00000542641 AS3MTQ9HBK9 375 aa13.66□□□□□ -0.22
YBX3-213ENST00000542641 IL17RBQ9NRM6 502 aa13.66□□□□□ -0.22
YBX3-213ENST00000542641 TCP11L1Q9NUJ3 509 aa13.66□□□□□ -0.22
YBX3-213ENST00000542641 IGKV6D-41A0A0C4DH26 115 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 SPDYE5A6NIY4 337 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 IFIT3O14879 490 aaKnown RBP13.65□□□□□ -0.22
YBX3-213ENST00000542641 PRC1O43663 620 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 CASTP20810 708 aaKnown RBP13.65□□□□□ -0.22
YBX3-213ENST00000542641 ICA1Q05084 483 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 PPATQ06203 517 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 COL9A3Q14050 684 aaPredicted RBP13.65□□□□□ -0.22
YBX3-213ENST00000542641 SART3Q15020 963 aaKnown RBP13.65□□□□□ -0.22
YBX3-213ENST00000542641 CCDC178Q5BJE1 867 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 PPP4R3BQ5MIZ7 849 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 DHX32Q7L7V1 743 aaKnown RBP13.65□□□□□ -0.22
YBX3-213ENST00000542641 CLEC10AQ8IUN9 316 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 OTUD5Q96G74 571 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 CEP95Q96GE4 821 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 HHIPL1Q96JK4 782 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 TBC1D32Q96NH3 1257 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 ZSCAN10Q96SZ4 725 aaPredicted RBP13.65□□□□□ -0.22
YBX3-213ENST00000542641 TBC1D2Q9BYX2 928 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 TM6SF1Q9BZW5 370 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 ZSWIM6Q9HCJ5 1215 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 MTMR4Q9NYA4 1195 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 STX8Q9UNK0 236 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 PLIN4Q96Q06 1357 aa13.65□□□□□ -0.22
YBX3-213ENST00000542641 ERICH2A1L162 156 aa13.64□□□□□ -0.23
YBX3-213ENST00000542641 TTLL1O95922 423 aa13.64□□□□□ -0.23
YBX3-213ENST00000542641 EEF2P13639 858 aaKnown RBP13.64□□□□□ -0.23
YBX3-213ENST00000542641 CPA1P15085 419 aa13.64□□□□□ -0.23
YBX3-213ENST00000542641 ANTXR2P58335 489 aa13.64□□□□□ -0.23
YBX3-213ENST00000542641 EXOSC10Q01780 885 aaKnown RBP13.64□□□□□ -0.23
YBX3-213ENST00000542641 SPP2Q13103 211 aa13.64□□□□□ -0.23
YBX3-213ENST00000542641 PAXIP1Q6ZW49 1069 aaPredicted RBP13.64□□□□□ -0.23
YBX3-213ENST00000542641 RUFY3Q7L099 469 aa13.64□□□□□ -0.23
YBX3-213ENST00000542641 SIAH1Q8IUQ4 282 aa13.64□□□□□ -0.23
YBX3-213ENST00000542641 ZNF280CQ8ND82 737 aa13.64□□□□□ -0.23
YBX3-213ENST00000542641 IL17RAQ96F46 866 aa13.64□□□□□ -0.23
YBX3-213ENST00000542641 WDR18Q9BV38 432 aa13.64□□□□□ -0.23
YBX3-213ENST00000542641 ARHGEF10LQ9HCE6 1279 aa13.64□□□□□ -0.23
YBX3-213ENST00000542641 CLIP2Q9UDT6 1046 aa13.64□□□□□ -0.23
YBX3-213ENST00000542641 AFG3L2Q9Y4W6 797 aa13.64□□□□□ -0.23
YBX3-213ENST00000542641 CYP46A1Q9Y6A2 500 aa13.64□□□□□ -0.23
YBX3-213ENST00000542641 TNKSO95271 1327 aa13.64□□□□□ -0.23
YBX3-213ENST00000542641 TRIM75PA6NK02 468 aa13.63□□□□□ -0.23
YBX3-213ENST00000542641 IRF6O14896 467 aa13.63□□□□□ -0.23
YBX3-213ENST00000542641 RPS6KB1P23443 525 aa13.63□□□□□ -0.23
YBX3-213ENST00000542641 FGD1P98174 961 aa13.63□□□□□ -0.23
YBX3-213ENST00000542641 PPIL2Q13356 520 aa13.63□□□□□ -0.23
YBX3-213ENST00000542641 DEFB115Q30KQ5 88 aa13.63□□□□□ -0.23
YBX3-213ENST00000542641 TMEM67Q5HYA8 995 aa13.63□□□□□ -0.23
YBX3-213ENST00000542641 DGKHQ86XP1 1220 aa13.63□□□□□ -0.23
YBX3-213ENST00000542641 ACER1Q8TDN7 264 aa13.63□□□□□ -0.23
YBX3-213ENST00000542641 CCDC102AQ96A19 550 aa13.63□□□□□ -0.23
YBX3-213ENST00000542641 WNK4Q96J92 1243 aa13.63□□□□□ -0.23
YBX3-213ENST00000542641 TMEM87BQ96K49 555 aa13.63□□□□□ -0.23
YBX3-213ENST00000542641 TTC14Q96N46 770 aa13.63□□□□□ -0.23
YBX3-213ENST00000542641 LRRC2Q9BYS8 371 aa13.63□□□□□ -0.23
YBX3-213ENST00000542641 UPF3BQ9BZI7 483 aaKnown RBP13.63□□□□□ -0.23
YBX3-213ENST00000542641 NYAP2Q9P242 653 aa13.63□□□□□ -0.23
YBX3-213ENST00000542641 WDR19Q8NEZ3 1342 aa13.63□□□□□ -0.23
YBX3-213ENST00000542641 A0A1W2PRG0 241 aa13.62□□□□□ -0.23
YBX3-213ENST00000542641 RASSF10A6NK89 507 aa13.62□□□□□ -0.23
YBX3-213ENST00000542641 USP17L10C9JJH3 530 aa13.62□□□□□ -0.23
YBX3-213ENST00000542641 CXCL11O14625 94 aa13.62□□□□□ -0.23
YBX3-213ENST00000542641 ZBTB48P10074 688 aaPredicted RBP13.62□□□□□ -0.23
YBX3-213ENST00000542641 HSPA6P17066 643 aa13.62□□□□□ -0.23
YBX3-213ENST00000542641 GJA5P36382 358 aa13.62□□□□□ -0.23
YBX3-213ENST00000542641 ECE1P42892 770 aa13.62□□□□□ -0.23
YBX3-213ENST00000542641 HTRA3P83110 453 aa13.62□□□□□ -0.23
YBX3-213ENST00000542641 MKRN3Q13064 507 aaKnown RBP13.62□□□□□ -0.23
YBX3-213ENST00000542641 GRM1Q13255 1194 aa13.62□□□□□ -0.23
YBX3-213ENST00000542641 WTAPQ15007 396 aa13.62□□□□□ -0.23
YBX3-213ENST00000542641 IFIT1BQ5T764 474 aaKnown RBP13.62□□□□□ -0.23
YBX3-213ENST00000542641 SPRYD7Q5W111 196 aa13.62□□□□□ -0.23
YBX3-213ENST00000542641 RCSD1Q6JBY9 416 aa13.62□□□□□ -0.23
YBX3-213ENST00000542641 RASAL3Q86YV0 1011 aa13.62□□□□□ -0.23
YBX3-213ENST00000542641 ENAHQ8N8S7 591 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms