RNA–Protein interactions for RNA: ENST00000542557.5

PTPRO-208, Transcript of protein tyrosine phosphatase, receptor type O, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRO, Length 2,946 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRO-208ENST00000542557 SHISA4Q96DD7 197 aa7.5□□□□□ -1.21
PTPRO-208ENST00000542557 DCP1AQ9NPI6 582 aaPredicted RBP7.5□□□□□ -1.21
PTPRO-208ENST00000542557 AATFQ9NY61 560 aaKnown RBP eCLIP7.5□□□□□ -1.21
PTPRO-208ENST00000542557 PCDHB6Q9Y5E3 794 aa7.5□□□□□ -1.21
PTPRO-208ENST00000542557 CNTNAP5Q8WYK1 1306 aa7.5□□□□□ -1.21
PTPRO-208ENST00000542557 PSDA5PKW4 1024 aaPredicted RBP7.5□□□□□ -1.21
PTPRO-208ENST00000542557 TRIM75PA6NK02 468 aa7.5□□□□□ -1.21
PTPRO-208ENST00000542557 CLSTN1O94985 981 aa7.5□□□□□ -1.21
PTPRO-208ENST00000542557 LMOD1P29536 600 aaPredicted RBP7.5□□□□□ -1.21
PTPRO-208ENST00000542557 SARSP49591 514 aaKnown RBP7.5□□□□□ -1.21
PTPRO-208ENST00000542557 CT47A1Q5JQC4 288 aaPredicted RBP7.5□□□□□ -1.21
PTPRO-208ENST00000542557 CEP135Q66GS9 1140 aa7.5□□□□□ -1.21
PTPRO-208ENST00000542557 ARMCX5Q6P1M9 558 aa7.5□□□□□ -1.21
PTPRO-208ENST00000542557 NBPF5PQ86XG9 351 aaPredicted RBP7.5□□□□□ -1.21
PTPRO-208ENST00000542557 FOXP4Q8IVH2 680 aaPredicted RBP7.5□□□□□ -1.21
PTPRO-208ENST00000542557 CMTR1Q8N1G2 835 aaKnown RBP7.5□□□□□ -1.21
PTPRO-208ENST00000542557 MLKLQ8NB16 471 aa7.5□□□□□ -1.21
PTPRO-208ENST00000542557 SPATA20Q8TB22 786 aa7.5□□□□□ -1.21
PTPRO-208ENST00000542557 OXER1Q8TDS5 423 aa7.5□□□□□ -1.21
PTPRO-208ENST00000542557 CCDC34Q96HJ3 373 aa7.5□□□□□ -1.21
PTPRO-208ENST00000542557 BRMS1Q9HCU9 246 aa7.5□□□□□ -1.21
PTPRO-208ENST00000542557 ROBO3Q96MS0 1386 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 WTIPA6NIX2 430 aaPredicted RBP7.49□□□□□ -1.21
PTPRO-208ENST00000542557 USP27XA6NNY8 438 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 USP17L12C9JPN9 530 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 USP17L21D6R901 530 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 ACTN4O43707 911 aaKnown RBP7.49□□□□□ -1.21
PTPRO-208ENST00000542557 TUBB4AP04350 444 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 KLRK1P26718 216 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 PTPN14Q15678 1187 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 TPTE2Q6XPS3 522 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 BICDL1Q6ZP65 573 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 CCDC82Q8N4S0 544 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 CCDC112Q8NEF3 446 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 TNFRSF25Q93038 417 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 FERMT2Q96AC1 680 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 CABP5Q9NP86 173 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 MAN1B1Q9UKM7 699 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.49□□□□□ -1.21
PTPRO-208ENST00000542557 CYP2D7A0A087X1C5 515 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 SMIM22K7EJ46 135 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 POLR2DO15514 142 aaKnown RBP7.49□□□□□ -1.21
PTPRO-208ENST00000542557 ZPR1O75312 459 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 PLEKHA8P1O95397 391 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 ATP1A3P13637 1013 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 BMP6P22004 513 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 UBASH3AP57075 661 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 GRIN1Q05586 938 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 MORC3Q14149 939 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 SPTY2D1Q68D10 685 aaPredicted RBP7.49□□□□□ -1.21
PTPRO-208ENST00000542557 VSTM4Q8IW00 320 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 ENOX1Q8TC92 643 aaKnown RBP7.49□□□□□ -1.21
PTPRO-208ENST00000542557 SMARCE1Q969G3 411 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 VPS54Q9P1Q0 977 aa7.49□□□□□ -1.21
PTPRO-208ENST00000542557 GNPATO15228 680 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 CCP110O43303 1012 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 TOM1O60784 492 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 TM4SF1P30408 202 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 TRAPPC10P48553 1259 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 NPY5RQ15761 445 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 CTCFLQ8NI51 663 aaPredicted RBP7.48□□□□□ -1.21
PTPRO-208ENST00000542557 SRP68Q9UHB9 627 aaKnown RBP7.48□□□□□ -1.21
PTPRO-208ENST00000542557 SERTAD1Q9UHV2 236 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 NAV1Q8NEY1 1877 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 FOXN1O15353 648 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 PRDM1O75626 825 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 SERPINC1P01008 464 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 ZNF18P17022 549 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 PRDX5P30044 214 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 PDE4BQ07343 736 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 SPECC1Q5M775 1068 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 TMCO4Q5TGY1 634 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 E4F1Q66K89 784 aaPredicted RBP7.48□□□□□ -1.21
PTPRO-208ENST00000542557 ISM2Q6H9L7 571 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 SH3RF1Q7Z6J0 888 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 FNBP4Q8N3X1 1017 aaPredicted RBP7.48□□□□□ -1.21
PTPRO-208ENST00000542557 TSC1Q92574 1164 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 CSRNP2Q9H175 543 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 RTCBQ9Y3I0 505 aaKnown RBP7.48□□□□□ -1.21
PTPRO-208ENST00000542557 V9GY48 417 aaPredicted RBP7.48□□□□□ -1.21
PTPRO-208ENST00000542557 PRR29P0C7W0 189 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 ERCC5P28715 1186 aaPredicted RBP7.48□□□□□ -1.21
PTPRO-208ENST00000542557 FCHSD1Q86WN1 690 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 PROM2Q8N271 834 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 ANKS1AQ92625 1134 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 PYM1Q9BRP8 204 aaKnown RBP7.48□□□□□ -1.21
PTPRO-208ENST00000542557 CCDC94Q9BW85 323 aaPredicted RBP7.48□□□□□ -1.21
PTPRO-208ENST00000542557 TMX1Q9H3N1 280 aa7.48□□□□□ -1.21
PTPRO-208ENST00000542557 SLFN14P0C7P3 912 aa7.47□□□□□ -1.21
PTPRO-208ENST00000542557 SCG2P13521 617 aa7.47□□□□□ -1.21
PTPRO-208ENST00000542557 PLCD1P51178 756 aa7.47□□□□□ -1.21
PTPRO-208ENST00000542557 ATP2C1P98194 919 aaPredicted RBP7.47□□□□□ -1.21
PTPRO-208ENST00000542557 NCBP1Q09161 790 aaKnown RBP7.47□□□□□ -1.21
PTPRO-208ENST00000542557 PFKFB3Q16875 520 aaPredicted RBP7.47□□□□□ -1.21
PTPRO-208ENST00000542557 CFAP100Q494V2 611 aa7.47□□□□□ -1.21
PTPRO-208ENST00000542557 CCDC178Q5BJE1 867 aa7.47□□□□□ -1.21
PTPRO-208ENST00000542557 EARS2Q5JPH6 523 aaKnown RBP7.47□□□□□ -1.21
PTPRO-208ENST00000542557 C15orf52Q6ZUT6 534 aaKnown RBP7.47□□□□□ -1.21
PTPRO-208ENST00000542557 DZIP1Q86YF9 867 aaKnown RBP7.47□□□□□ -1.21
PTPRO-208ENST00000542557 SRBD1Q8N5C6 995 aaKnown RBP7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 740.5 ms