RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-209ENST00000542286 SRBD1Q8N5C6 995 aaKnown RBP16.92■□□□□ 0.3
DDX55-209ENST00000542286 DHX58Q96C10 678 aa16.92■□□□□ 0.3
DDX55-209ENST00000542286 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.92■□□□□ 0.3
DDX55-209ENST00000542286 ANKIB1Q9P2G1 1089 aa16.92■□□□□ 0.3
DDX55-209ENST00000542286 NARFQ9UHQ1 456 aa16.92■□□□□ 0.3
DDX55-209ENST00000542286 SERPINC1P01008 464 aa16.91■□□□□ 0.3
DDX55-209ENST00000542286 CDK11BP21127 795 aaKnown RBP16.91■□□□□ 0.3
DDX55-209ENST00000542286 CPVLQ9H3G5 476 aa16.91■□□□□ 0.3
DDX55-209ENST00000542286 MCM9Q9NXL9 1143 aa16.91■□□□□ 0.3
DDX55-209ENST00000542286 PTPREP23469 700 aa16.91■□□□□ 0.3
DDX55-209ENST00000542286 TM4SF1P30408 202 aa16.91■□□□□ 0.3
DDX55-209ENST00000542286 CFAP100Q494V2 611 aa16.91■□□□□ 0.3
DDX55-209ENST00000542286 CATIPQ7Z7H3 387 aa16.91■□□□□ 0.3
DDX55-209ENST00000542286 WASF1Q92558 559 aa16.91■□□□□ 0.3
DDX55-209ENST00000542286 MAN1B1Q9UKM7 699 aa16.91■□□□□ 0.3
DDX55-209ENST00000542286 MYH6P13533 1939 aa16.91■□□□□ 0.3
DDX55-209ENST00000542286 CDC25AP30304 524 aa16.9■□□□□ 0.3
DDX55-209ENST00000542286 IRX5P78411 483 aaPredicted RBP16.9■□□□□ 0.3
DDX55-209ENST00000542286 MDM2Q00987 491 aaPredicted RBP16.9■□□□□ 0.3
DDX55-209ENST00000542286 KRT222Q8N1A0 295 aa16.9■□□□□ 0.3
DDX55-209ENST00000542286 RASGRP4Q8TDF6 673 aa16.9■□□□□ 0.3
DDX55-209ENST00000542286 COL5A3P25940 1745 aaPredicted RBP16.9■□□□□ 0.3
DDX55-209ENST00000542286 CCDC66A2RUB6 948 aa16.9■□□□□ 0.3
DDX55-209ENST00000542286 CEP135Q66GS9 1140 aa16.9■□□□□ 0.3
DDX55-209ENST00000542286 GPKOWQ92917 476 aaPredicted RBP eCLIP16.9■□□□□ 0.3
DDX55-209ENST00000542286 MED15Q96RN5 788 aa16.9■□□□□ 0.3
DDX55-209ENST00000542286 FOXP1Q9H334 677 aaPredicted RBP16.9■□□□□ 0.3
DDX55-209ENST00000542286 SAP30BPQ9UHR5 308 aaKnown RBP16.9■□□□□ 0.3
DDX55-209ENST00000542286 ANAPC4Q9UJX5 808 aa16.9■□□□□ 0.3
DDX55-209ENST00000542286 UTRNP46939 3433 aa16.9■□□□□ 0.3
DDX55-209ENST00000542286 CCDC196A0A1B0GTZ2 297 aa16.89■□□□□ 0.3
DDX55-209ENST00000542286 STX17P56962 302 aa16.89■□□□□ 0.3
DDX55-209ENST00000542286 UBASH3AP57075 661 aa16.89■□□□□ 0.3
DDX55-209ENST00000542286 POSTNQ15063 836 aa16.89■□□□□ 0.3
DDX55-209ENST00000542286 E4F1Q66K89 784 aaPredicted RBP16.89■□□□□ 0.3
DDX55-209ENST00000542286 KLHL10Q6JEL2 608 aa16.89■□□□□ 0.3
DDX55-209ENST00000542286 IQCA1Q86XH1 822 aa16.89■□□□□ 0.3
DDX55-209ENST00000542286 RREB1Q92766 1687 aa16.89■□□□□ 0.29
DDX55-209ENST00000542286 USP17L3A6NCW0 530 aa16.89■□□□□ 0.29
DDX55-209ENST00000542286 USP17L4A6NCW7 530 aa16.89■□□□□ 0.29
DDX55-209ENST00000542286 RPS6KA4O75676 772 aa16.89■□□□□ 0.29
DDX55-209ENST00000542286 MYL5Q02045 173 aa16.89■□□□□ 0.29
DDX55-209ENST00000542286 RILPL1Q5EBL4 403 aa16.89■□□□□ 0.29
DDX55-209ENST00000542286 USP17L1Q7RTZ2 530 aa16.89■□□□□ 0.29
DDX55-209ENST00000542286 INTS13Q9NVM9 706 aa16.89■□□□□ 0.29
DDX55-209ENST00000542286 RTCBQ9Y3I0 505 aaKnown RBP16.89■□□□□ 0.29
DDX55-209ENST00000542286 DUOX1Q9NRD9 1551 aa16.89■□□□□ 0.29
DDX55-209ENST00000542286 TSPY2A6NKD2 308 aa16.89■□□□□ 0.29
DDX55-209ENST00000542286 NPY5RQ15761 445 aa16.89■□□□□ 0.29
DDX55-209ENST00000542286 DZIP1Q86YF9 867 aaKnown RBP16.89■□□□□ 0.29
DDX55-209ENST00000542286 CCAR2Q8N163 923 aaKnown RBP16.89■□□□□ 0.29
DDX55-209ENST00000542286 TMTC2Q8N394 836 aa16.89■□□□□ 0.29
DDX55-209ENST00000542286 STAG2Q8N3U4 1231 aa16.89■□□□□ 0.29
DDX55-209ENST00000542286 SH3RF3Q8TEJ3 882 aaPredicted RBP16.89■□□□□ 0.29
DDX55-209ENST00000542286 TIGD1Q96MW7 591 aa16.89■□□□□ 0.29
DDX55-209ENST00000542286 LAMB2P55268 1798 aa16.88■□□□□ 0.29
DDX55-209ENST00000542286 A0A1B0GUL6 1792 aa16.88■□□□□ 0.29
DDX55-209ENST00000542286 UBAP1LF5GYI3 381 aa16.88■□□□□ 0.29
DDX55-209ENST00000542286 TPTE2Q6XPS3 522 aa16.88■□□□□ 0.29
DDX55-209ENST00000542286 BPIFA3Q9BQP9 254 aa16.88■□□□□ 0.29
DDX55-209ENST00000542286 BRIP1Q9BX63 1249 aa16.88■□□□□ 0.29
DDX55-209ENST00000542286 TMX1Q9H3N1 280 aa16.88■□□□□ 0.29
DDX55-209ENST00000542286 SAMSN1Q9NSI8 373 aaKnown RBP16.88■□□□□ 0.29
DDX55-209ENST00000542286 VWA3AA6NCI4 1184 aa16.88■□□□□ 0.29
DDX55-209ENST00000542286 KMT5BQ4FZB7 885 aa16.88■□□□□ 0.29
DDX55-209ENST00000542286 SLC10A5Q5PT55 438 aa16.88■□□□□ 0.29
DDX55-209ENST00000542286 FAM196AQ6ZSG2 479 aa16.88■□□□□ 0.29
DDX55-209ENST00000542286 PIK3AP1Q6ZUJ8 805 aa16.88■□□□□ 0.29
DDX55-209ENST00000542286 PHF20Q9BVI0 1012 aa16.88■□□□□ 0.29
DDX55-209ENST00000542286 RNF26Q9BY78 433 aaPredicted RBP16.88■□□□□ 0.29
DDX55-209ENST00000542286 SFPQP23246 707 aaKnown RBP eCLIP16.87■□□□□ 0.29
DDX55-209ENST00000542286 KRT2P35908 639 aa16.87■□□□□ 0.29
DDX55-209ENST00000542286 PTPN14Q15678 1187 aa16.87■□□□□ 0.29
DDX55-209ENST00000542286 OLFM4Q6UX06 510 aa16.87■□□□□ 0.29
DDX55-209ENST00000542286 LTBP4Q8N2S1 1624 aa16.87■□□□□ 0.29
DDX55-209ENST00000542286 SYMPKQ92797 1274 aaKnown RBP16.87■□□□□ 0.29
DDX55-209ENST00000542286 CNTNAP4Q9C0A0 1308 aa16.87■□□□□ 0.29
DDX55-209ENST00000542286 FAM237AA0A1B0GTK4 181 aa16.87■□□□□ 0.29
DDX55-209ENST00000542286 ACTN4O43707 911 aaKnown RBP16.87■□□□□ 0.29
DDX55-209ENST00000542286 TMTC3Q6ZXV5 915 aa16.87■□□□□ 0.29
DDX55-209ENST00000542286 CRNKL1Q9BZJ0 848 aaKnown RBP16.87■□□□□ 0.29
DDX55-209ENST00000542286 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.87■□□□□ 0.29
DDX55-209ENST00000542286 CNTNAP5Q8WYK1 1306 aa16.86■□□□□ 0.29
DDX55-209ENST00000542286 TRIM75PA6NK02 468 aa16.86■□□□□ 0.29
DDX55-209ENST00000542286 GOLGA8HP0CJ92 632 aa16.86■□□□□ 0.29
DDX55-209ENST00000542286 RCSD1Q6JBY9 416 aa16.86■□□□□ 0.29
DDX55-209ENST00000542286 LRRN4CLQ8ND94 238 aa16.86■□□□□ 0.29
DDX55-209ENST00000542286 ZNF397Q8NF99 534 aaPredicted RBP16.86■□□□□ 0.29
DDX55-209ENST00000542286 OSBPL5Q9H0X9 879 aaPredicted RBP16.86■□□□□ 0.29
DDX55-209ENST00000542286 BLZF1Q9H2G9 400 aa16.86■□□□□ 0.29
DDX55-209ENST00000542286 USP21Q9UK80 565 aa16.86■□□□□ 0.29
DDX55-209ENST00000542286 NFE2L3Q9Y4A8 694 aa16.86■□□□□ 0.29
DDX55-209ENST00000542286 SRPRBQ9Y5M8 271 aaKnown RBP16.86■□□□□ 0.29
DDX55-209ENST00000542286 SCN7AQ01118 1682 aa16.86■□□□□ 0.29
DDX55-209ENST00000542286 NID2Q14112 1375 aa16.86■□□□□ 0.29
DDX55-209ENST00000542286 MCM7P33993 719 aa16.86■□□□□ 0.29
DDX55-209ENST00000542286 RFC4P35249 363 aa16.86■□□□□ 0.29
DDX55-209ENST00000542286 TFAP4Q01664 338 aa16.86■□□□□ 0.29
DDX55-209ENST00000542286 MAPKAPK5Q8IW41 473 aa16.86■□□□□ 0.29
DDX55-209ENST00000542286 TGFBRAP1Q8WUH2 860 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms