RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 RAB3GAP1Q15042 981 aa17.13■□□□□ 0.33
SMARCA4-206ENST00000538456 MFSD14CQ5VZR4 134 aa17.13■□□□□ 0.33
SMARCA4-206ENST00000538456 EDC3Q96F86 508 aaKnown RBP17.13■□□□□ 0.33
SMARCA4-206ENST00000538456 RABGAP1Q9Y3P9 1069 aa17.13■□□□□ 0.33
SMARCA4-206ENST00000538456 EYSQ5T1H1 3165 aa17.13■□□□□ 0.33
SMARCA4-206ENST00000538456 USP17L15C9J2P7 530 aa17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 USP17L13C9JLJ4 530 aa17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 USP17L11C9JVI0 530 aa17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 USP17L18D6R9N7 530 aa17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 USP17L22D6RA61 530 aa17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 USP17L17D6RBQ6 530 aa17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 USP17L19D6RCP7 530 aa17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 USP17L20D6RJB6 530 aa17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 BCAR3O75815 825 aa17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 IDH1O75874 414 aaKnown RBP17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 GLRX3O76003 335 aaKnown RBP17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 CNGA1P29973 690 aa17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 USP5P45974 858 aa17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 ATN1P54259 1190 aaPredicted RBP17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 USP17L24Q0WX57 530 aa17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 FAM161BQ96MY7 647 aa17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 LBHD1Q9BQE6 289 aaPredicted RBP17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 GPR108Q9NPR9 543 aa17.12■□□□□ 0.33
SMARCA4-206ENST00000538456 VCAM1P19320 739 aa17.11■□□□□ 0.33
SMARCA4-206ENST00000538456 C12orf42Q96LP6 360 aa17.11■□□□□ 0.33
SMARCA4-206ENST00000538456 TLR7Q9NYK1 1049 aaKnown RBP17.11■□□□□ 0.33
SMARCA4-206ENST00000538456 DDX20Q9UHI6 824 aaKnown RBP17.11■□□□□ 0.33
SMARCA4-206ENST00000538456 IVNS1ABPQ9Y6Y0 642 aa17.11■□□□□ 0.33
SMARCA4-206ENST00000538456 LTBP2Q14767 1821 aa17.11■□□□□ 0.33
SMARCA4-206ENST00000538456 VCANP13611 3396 aa17.1■□□□□ 0.33
SMARCA4-206ENST00000538456 SLC15A5A6NIM6 579 aa17.1■□□□□ 0.33
SMARCA4-206ENST00000538456 SURF6O75683 361 aaKnown RBP17.1■□□□□ 0.33
SMARCA4-206ENST00000538456 PTPREP23469 700 aa17.1■□□□□ 0.33
SMARCA4-206ENST00000538456 CYP2C19P33261 490 aa17.1■□□□□ 0.33
SMARCA4-206ENST00000538456 USP14P54578 494 aa17.1■□□□□ 0.33
SMARCA4-206ENST00000538456 ATP2B2Q01814 1243 aa17.1■□□□□ 0.33
SMARCA4-206ENST00000538456 TATDN1Q6P1N9 297 aa17.1■□□□□ 0.33
SMARCA4-206ENST00000538456 ACER1Q8TDN7 264 aa17.1■□□□□ 0.33
SMARCA4-206ENST00000538456 C1orf115Q9H7X2 142 aa17.1■□□□□ 0.33
SMARCA4-206ENST00000538456 BTBD7Q9P203 1132 aa17.1■□□□□ 0.33
SMARCA4-206ENST00000538456 SERPINB13Q9UIV8 391 aa17.1■□□□□ 0.33
SMARCA4-206ENST00000538456 DBNLQ9UJU6 430 aaKnown RBP17.1■□□□□ 0.33
SMARCA4-206ENST00000538456 NAV1Q8NEY1 1877 aa17.1■□□□□ 0.33
SMARCA4-206ENST00000538456 POLA2Q14181 598 aa17.09■□□□□ 0.33
SMARCA4-206ENST00000538456 ABCB5Q2M3G0 1257 aa17.09■□□□□ 0.33
SMARCA4-206ENST00000538456 CERKLQ49MI3 558 aaPredicted RBP17.09■□□□□ 0.33
SMARCA4-206ENST00000538456 CATSPERGQ6ZRH7 1159 aa17.09■□□□□ 0.33
SMARCA4-206ENST00000538456 TMEM57Q8N5G2 664 aa17.09■□□□□ 0.33
SMARCA4-206ENST00000538456 MAGEB6Q8N7X4 407 aa17.09■□□□□ 0.33
SMARCA4-206ENST00000538456 NPLOC4Q8TAT6 608 aa17.09■□□□□ 0.33
SMARCA4-206ENST00000538456 ZNF512BQ96KM6 892 aaPredicted RBP17.09■□□□□ 0.33
SMARCA4-206ENST00000538456 GUCD1Q96NT3 240 aa17.09■□□□□ 0.33
SMARCA4-206ENST00000538456 KIAA1683Q9H0B3 1180 aa17.09■□□□□ 0.33
SMARCA4-206ENST00000538456 CCDC8Q9H0W5 538 aaPredicted RBP17.09■□□□□ 0.33
SMARCA4-206ENST00000538456 RLFQ13129 1914 aa17.08■□□□□ 0.33
SMARCA4-206ENST00000538456 SPDYE16A6NNV3 312 aaPredicted RBP17.08■□□□□ 0.32
SMARCA4-206ENST00000538456 GRB14Q14449 540 aa17.08■□□□□ 0.32
SMARCA4-206ENST00000538456 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.08■□□□□ 0.32
SMARCA4-206ENST00000538456 TRPV1Q8NER1 839 aa17.08■□□□□ 0.32
SMARCA4-206ENST00000538456 SSH3Q8TE77 659 aa17.08■□□□□ 0.32
SMARCA4-206ENST00000538456 LPAR1Q92633 364 aa17.08■□□□□ 0.32
SMARCA4-206ENST00000538456 COL25A1Q9BXS0 654 aaPredicted RBP17.08■□□□□ 0.32
SMARCA4-206ENST00000538456 EHD4Q9H223 541 aa17.08■□□□□ 0.32
SMARCA4-206ENST00000538456 RPAP3Q9H6T3 665 aaPredicted RBP17.08■□□□□ 0.32
SMARCA4-206ENST00000538456 PRKAG2Q9UGJ0 569 aa17.08■□□□□ 0.32
SMARCA4-206ENST00000538456 CDH23Q9H251 3354 aa17.07■□□□□ 0.32
SMARCA4-206ENST00000538456 POTEB2H3BUK9 544 aa17.07■□□□□ 0.32
SMARCA4-206ENST00000538456 DNM1LO00429 736 aa17.07■□□□□ 0.32
SMARCA4-206ENST00000538456 MSCO60682 206 aa17.07■□□□□ 0.32
SMARCA4-206ENST00000538456 MYCNP04198 464 aaPredicted RBP17.07■□□□□ 0.32
SMARCA4-206ENST00000538456 RTP1P59025 263 aa17.07■□□□□ 0.32
SMARCA4-206ENST00000538456 GJC2Q5T442 439 aaPredicted RBP17.07■□□□□ 0.32
SMARCA4-206ENST00000538456 ATP11BQ9Y2G3 1177 aa17.07■□□□□ 0.32
SMARCA4-206ENST00000538456 ZNF236Q9UL36 1845 aa17.06■□□□□ 0.32
SMARCA4-206ENST00000538456 HOXC6P09630 235 aa17.06■□□□□ 0.32
SMARCA4-206ENST00000538456 ATP8B2P98198 1209 aa17.06■□□□□ 0.32
SMARCA4-206ENST00000538456 ANO1Q5XXA6 986 aa17.06■□□□□ 0.32
SMARCA4-206ENST00000538456 LBX2Q6XYB7 198 aa17.06■□□□□ 0.32
SMARCA4-206ENST00000538456 TTC6Q86TZ1 520 aa17.06■□□□□ 0.32
SMARCA4-206ENST00000538456 ANTXR1Q9H6X2 564 aa17.06■□□□□ 0.32
SMARCA4-206ENST00000538456 CABP5Q9NP86 173 aa17.06■□□□□ 0.32
SMARCA4-206ENST00000538456 IGSF3O75054 1194 aa17.05■□□□□ 0.32
SMARCA4-206ENST00000538456 CYBAP13498 195 aa17.05■□□□□ 0.32
SMARCA4-206ENST00000538456 SHMT1P34896 483 aa17.05■□□□□ 0.32
SMARCA4-206ENST00000538456 PLCD1P51178 756 aa17.05■□□□□ 0.32
SMARCA4-206ENST00000538456 SEPT2Q15019 361 aa17.05■□□□□ 0.32
SMARCA4-206ENST00000538456 ZNF697Q5TEC3 545 aa17.05■□□□□ 0.32
SMARCA4-206ENST00000538456 FAM109BQ6ICB4 259 aaPredicted RBP17.05■□□□□ 0.32
SMARCA4-206ENST00000538456 DPP9Q86TI2 863 aa17.05■□□□□ 0.32
SMARCA4-206ENST00000538456 CERS3Q8IU89 383 aa17.05■□□□□ 0.32
SMARCA4-206ENST00000538456 EAF2Q96CJ1 260 aaPredicted RBP17.05■□□□□ 0.32
SMARCA4-206ENST00000538456 TANGO6Q9C0B7 1094 aa17.05■□□□□ 0.32
SMARCA4-206ENST00000538456 PRDM5Q9NQX1 630 aaPredicted RBP17.05■□□□□ 0.32
SMARCA4-206ENST00000538456 PRUNE2Q8WUY3 3088 aa17.05■□□□□ 0.32
SMARCA4-206ENST00000538456 A0A0G2JMZ2 1700 aa17.04■□□□□ 0.32
SMARCA4-206ENST00000538456 MYH8P13535 1937 aa17.04■□□□□ 0.32
SMARCA4-206ENST00000538456 KBTBD13C9JR72 458 aa17.04■□□□□ 0.32
SMARCA4-206ENST00000538456 MPHOSPH10O00566 681 aaKnown RBP17.04■□□□□ 0.32
SMARCA4-206ENST00000538456 ADORA2AP29274 412 aa17.04■□□□□ 0.32
SMARCA4-206ENST00000538456 GUCY1A2P33402 732 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms