RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 PPEF1O14829 653 aaPredicted RBP8.61□□□□□ -1.03
HDAC3-216ENST00000523088 FRAT2O75474 233 aaPredicted RBP8.61□□□□□ -1.03
HDAC3-216ENST00000523088 RGS20O76081 388 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 SNUPNO95149 360 aaKnown RBP8.61□□□□□ -1.03
HDAC3-216ENST00000523088 FOSP01100 380 aaPredicted RBP8.61□□□□□ -1.03
HDAC3-216ENST00000523088 IARSP41252 1262 aaKnown RBP8.61□□□□□ -1.03
HDAC3-216ENST00000523088 GOLGA2Q08379 1002 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 NSUN2Q08J23 767 aaKnown RBP eCLIP8.61□□□□□ -1.03
HDAC3-216ENST00000523088 TCIRG1Q13488 830 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 SEPT2Q15019 361 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 CNGA3Q16281 694 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 COBLL1Q53SF7 1204 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 ANKRD45Q5TZF3 282 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 SUSD4Q5VX71 490 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 COPS6Q7L5N1 327 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 ARMC2Q8NEN0 867 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 XAGE3Q8WTP9 111 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 DNAAF4Q8WXU2 420 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 FAM212AQ96EL1 285 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 LNPKQ9C0E8 428 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 INCENPQ9NQS7 918 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 PLSCR2Q9NRY7 297 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 ZNHIT6Q9NWK9 470 aaKnown RBP8.61□□□□□ -1.03
HDAC3-216ENST00000523088 CUEDC1Q9NWM3 386 aaPredicted RBP8.61□□□□□ -1.03
HDAC3-216ENST00000523088 ZNF219Q9P2Y4 722 aaPredicted RBP8.61□□□□□ -1.03
HDAC3-216ENST00000523088 N6AMT1Q9Y5N5 214 aa8.61□□□□□ -1.03
HDAC3-216ENST00000523088 LRRFIP2Q9Y608 721 aaKnown RBP8.61□□□□□ -1.03
HDAC3-216ENST00000523088 MYH3P11055 1940 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 LRRC37AA6NMS7 1700 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 DDX58O95786 925 aaKnown RBP8.6□□□□□ -1.03
HDAC3-216ENST00000523088 RPN1P04843 607 aaKnown RBP8.6□□□□□ -1.03
HDAC3-216ENST00000523088 CHMLP26374 656 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 USP8P40818 1118 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 PRELPP51888 382 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 EIF6P56537 245 aaKnown RBP8.6□□□□□ -1.03
HDAC3-216ENST00000523088 FAM160A1Q05DH4 1040 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 INF2Q27J81 1249 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 KIAA0753Q2KHM9 967 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 KBTBD12Q3ZCT8 623 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 TTC31Q49AM3 519 aaPredicted RBP8.6□□□□□ -1.03
HDAC3-216ENST00000523088 SFMBT2Q5VUG0 894 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 DUSP27Q5VZP5 1158 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 FAAH2Q6GMR7 532 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 SEPT14Q6ZU15 432 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 PNMA8AQ86V59 439 aaPredicted RBP8.6□□□□□ -1.03
HDAC3-216ENST00000523088 NLRP10Q86W26 655 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 RELL1Q8IUW5 271 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 GPC2Q8N158 579 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 ZNF280CQ8ND82 737 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 USP33Q8TEY7 942 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 PPM1EQ8WY54 764 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 MIEF2Q96C03 454 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 BACH2Q9BYV9 841 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 GRPEL1Q9HAV7 217 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 TRMT112Q9UI30 125 aaKnown RBP8.6□□□□□ -1.03
HDAC3-216ENST00000523088 SNED1Q8TER0 1413 aa8.6□□□□□ -1.03
HDAC3-216ENST00000523088 H7C1W4 665 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 FZD9O00144 591 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 APAF1O14727 1248 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 MYO1BO43795 1136 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 FMNL1O95466 1100 aaPredicted RBP8.59□□□□□ -1.03
HDAC3-216ENST00000523088 CYP2C19P33261 490 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 AIMP1Q12904 312 aaKnown RBP8.59□□□□□ -1.03
HDAC3-216ENST00000523088 TRIM28Q13263 835 aaKnown RBP8.59□□□□□ -1.03
HDAC3-216ENST00000523088 BIRC3Q13489 604 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 UBE4AQ14139 1066 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 CLPPQ16740 277 aaPredicted RBP8.59□□□□□ -1.03
HDAC3-216ENST00000523088 PROSER3Q2NL68 480 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 MUM1Q2TAK8 710 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 CCDC122Q5T0U0 273 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 TTC39BQ5VTQ0 682 aaPredicted RBP8.59□□□□□ -1.03
HDAC3-216ENST00000523088 CHADLQ6NUI6 762 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 CCDC186Q7Z3E2 898 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 LDHDQ86WU2 507 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 PEX5LQ8IYB4 626 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 CLASRPQ8N2M8 674 aaKnown RBP8.59□□□□□ -1.03
HDAC3-216ENST00000523088 CCDC89Q8N998 374 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 ERMNQ8TAM6 284 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 SH3TC2Q8TF17 1288 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 ATRIPQ8WXE1 791 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 DDX12PQ92771 950 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 YIPF2Q9BWQ6 316 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 MBIPQ9NS73 344 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 TRMT1Q9NXH9 659 aaKnown RBP8.59□□□□□ -1.03
HDAC3-216ENST00000523088 SLC45A1Q9Y2W3 748 aa8.59□□□□□ -1.03
HDAC3-216ENST00000523088 CDHR2Q9BYE9 1310 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 ZBED4O75132 1171 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 SMC2O95347 1197 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 VIL1P09327 827 aaKnown RBP8.58□□□□□ -1.04
HDAC3-216ENST00000523088 RBP3P10745 1247 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 PECAM1P16284 738 aaPredicted RBP8.58□□□□□ -1.04
HDAC3-216ENST00000523088 ZNF16P17020 682 aaPredicted RBP8.58□□□□□ -1.04
HDAC3-216ENST00000523088 SMARCA1P28370 1054 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 LMOD1P29536 600 aaPredicted RBP8.58□□□□□ -1.04
HDAC3-216ENST00000523088 NF2P35240 595 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 MAGEA9P43362 315 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 CDR1P51861 262 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 SKIV2LQ15477 1246 aaKnown RBP8.58□□□□□ -1.04
HDAC3-216ENST00000523088 TAF11Q15544 211 aa8.58□□□□□ -1.04
HDAC3-216ENST00000523088 KIF4BQ2VIQ3 1234 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms