RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 BACH2Q9BYV9 841 aa17.65■□□□□ 0.42
NUP54-213ENST00000513352 PLIN4Q96Q06 1357 aa17.65■□□□□ 0.42
NUP54-213ENST00000513352 RAD21O60216 631 aa17.64■□□□□ 0.41
NUP54-213ENST00000513352 NMT2O60551 498 aa17.64■□□□□ 0.41
NUP54-213ENST00000513352 GJA5P36382 358 aa17.64■□□□□ 0.41
NUP54-213ENST00000513352 ECE1P42892 770 aa17.64■□□□□ 0.41
NUP54-213ENST00000513352 PPIL2Q13356 520 aa17.64■□□□□ 0.41
NUP54-213ENST00000513352 ZYXQ15942 572 aaKnown RBP17.64■□□□□ 0.41
NUP54-213ENST00000513352 SPRYD7Q5W111 196 aa17.64■□□□□ 0.41
NUP54-213ENST00000513352 IQCA1Q86XH1 822 aa17.64■□□□□ 0.41
NUP54-213ENST00000513352 CEP95Q96GE4 821 aa17.64■□□□□ 0.41
NUP54-213ENST00000513352 NEK1Q96PY6 1258 aa17.64■□□□□ 0.41
NUP54-213ENST00000513352 KANSL2Q9H9L4 492 aa17.64■□□□□ 0.41
NUP54-213ENST00000513352 ARHGEF10LQ9HCE6 1279 aa17.64■□□□□ 0.41
NUP54-213ENST00000513352 ZSWIM5Q9P217 1185 aa17.64■□□□□ 0.41
NUP54-213ENST00000513352 IRF6O14896 467 aa17.63■□□□□ 0.41
NUP54-213ENST00000513352 SPP2Q13103 211 aa17.63■□□□□ 0.41
NUP54-213ENST00000513352 ADCK5Q3MIX3 580 aa17.63■□□□□ 0.41
NUP54-213ENST00000513352 CYB5R4Q7L1T6 521 aa17.63■□□□□ 0.41
NUP54-213ENST00000513352 CHST3Q7LGC8 479 aa17.63■□□□□ 0.41
NUP54-213ENST00000513352 ZNF280CQ8ND82 737 aa17.63■□□□□ 0.41
NUP54-213ENST00000513352 NKX2-3Q8TAU0 364 aa17.63■□□□□ 0.41
NUP54-213ENST00000513352 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.63■□□□□ 0.41
NUP54-213ENST00000513352 TBC1D2Q9BYX2 928 aa17.63■□□□□ 0.41
NUP54-213ENST00000513352 STX8Q9UNK0 236 aa17.63■□□□□ 0.41
NUP54-213ENST00000513352 ERICH2A1L162 156 aa17.62■□□□□ 0.41
NUP54-213ENST00000513352 ZBTB48P10074 688 aaPredicted RBP17.62■□□□□ 0.41
NUP54-213ENST00000513352 EEF2P13639 858 aaKnown RBP17.62■□□□□ 0.41
NUP54-213ENST00000513352 PSMA5P28066 241 aa17.62■□□□□ 0.41
NUP54-213ENST00000513352 NT5C2P49902 561 aa17.62■□□□□ 0.41
NUP54-213ENST00000513352 MTMR2Q13614 643 aa17.62■□□□□ 0.41
NUP54-213ENST00000513352 SART3Q15020 963 aaKnown RBP17.62■□□□□ 0.41
NUP54-213ENST00000513352 TSGA10IPQ3SY00 556 aa17.62■□□□□ 0.41
NUP54-213ENST00000513352 PPP4R3BQ5MIZ7 849 aa17.62■□□□□ 0.41
NUP54-213ENST00000513352 MB21D2Q8IYB1 491 aaPredicted RBP17.62■□□□□ 0.41
NUP54-213ENST00000513352 ACER1Q8TDN7 264 aa17.62■□□□□ 0.41
NUP54-213ENST00000513352 KCNB2Q92953 911 aa17.62■□□□□ 0.41
NUP54-213ENST00000513352 C22orf23Q9BZE7 217 aa17.62■□□□□ 0.41
NUP54-213ENST00000513352 SH2D4AQ9H788 454 aa17.62■□□□□ 0.41
NUP54-213ENST00000513352 MTMR4Q9NYA4 1195 aa17.62■□□□□ 0.41
NUP54-213ENST00000513352 CLIP2Q9UDT6 1046 aa17.62■□□□□ 0.41
NUP54-213ENST00000513352 AFG3L2Q9Y4W6 797 aa17.62■□□□□ 0.41
NUP54-213ENST00000513352 PTPRFP10586 1907 aa17.61■□□□□ 0.41
NUP54-213ENST00000513352 IGKV6D-41A0A0C4DH26 115 aa17.61■□□□□ 0.41
NUP54-213ENST00000513352 USP17L10C9JJH3 530 aa17.61■□□□□ 0.41
NUP54-213ENST00000513352 IFIT3O14879 490 aaKnown RBP17.61■□□□□ 0.41
NUP54-213ENST00000513352 PRC1O43663 620 aa17.61■□□□□ 0.41
NUP54-213ENST00000513352 TTLL1O95922 423 aa17.61■□□□□ 0.41
NUP54-213ENST00000513352 CASTP20810 708 aaKnown RBP17.61■□□□□ 0.41
NUP54-213ENST00000513352 MCM5P33992 734 aa17.61■□□□□ 0.41
NUP54-213ENST00000513352 SNAPC2Q13487 334 aa17.61■□□□□ 0.41
NUP54-213ENST00000513352 CCDC178Q5BJE1 867 aa17.61■□□□□ 0.41
NUP54-213ENST00000513352 BLOC1S2Q6QNY1 142 aa17.61■□□□□ 0.41
NUP54-213ENST00000513352 GADL1Q6ZQY3 521 aa17.61■□□□□ 0.41
NUP54-213ENST00000513352 ZSCAN10Q96SZ4 725 aaPredicted RBP17.61■□□□□ 0.41
NUP54-213ENST00000513352 WDR18Q9BV38 432 aa17.61■□□□□ 0.41
NUP54-213ENST00000513352 MTMR7Q9Y216 660 aa17.61■□□□□ 0.41
NUP54-213ENST00000513352 TNKSO95271 1327 aa17.61■□□□□ 0.41
NUP54-213ENST00000513352 FAM155AB1AL88 458 aaPredicted RBP17.6■□□□□ 0.41
NUP54-213ENST00000513352 AOC2O75106 756 aa17.6■□□□□ 0.41
NUP54-213ENST00000513352 HMGB1P09429 215 aaKnown RBP17.6■□□□□ 0.41
NUP54-213ENST00000513352 CPA1P15085 419 aa17.6■□□□□ 0.41
NUP54-213ENST00000513352 VEGFBP49765 207 aa17.6■□□□□ 0.41
NUP54-213ENST00000513352 GTF2A2P52657 109 aa17.6■□□□□ 0.41
NUP54-213ENST00000513352 HMGCS2P54868 508 aa17.6■□□□□ 0.41
NUP54-213ENST00000513352 FGD1P98174 961 aa17.6■□□□□ 0.41
NUP54-213ENST00000513352 LRRC47Q8N1G4 583 aaKnown RBP17.6■□□□□ 0.41
NUP54-213ENST00000513352 IL17RBQ9NRM6 502 aa17.6■□□□□ 0.41
NUP54-213ENST00000513352 TCP11L1Q9NUJ3 509 aa17.6■□□□□ 0.41
NUP54-213ENST00000513352 TMOD4Q9NZQ9 345 aa17.6■□□□□ 0.41
NUP54-213ENST00000513352 NYAP2Q9P242 653 aa17.6■□□□□ 0.41
NUP54-213ENST00000513352 ISY1Q9ULR0 285 aaKnown RBP17.6■□□□□ 0.41
NUP54-213ENST00000513352 WDR33Q9C0J8 1336 aaKnown RBP17.6■□□□□ 0.41
NUP54-213ENST00000513352 CXCL11O14625 94 aa17.59■□□□□ 0.41
NUP54-213ENST00000513352 ANTXR2P58335 489 aa17.59■□□□□ 0.41
NUP54-213ENST00000513352 ANAPC15P60006 121 aa17.59■□□□□ 0.41
NUP54-213ENST00000513352 NOGQ13253 232 aa17.59■□□□□ 0.41
NUP54-213ENST00000513352 TMEM67Q5HYA8 995 aa17.59■□□□□ 0.41
NUP54-213ENST00000513352 CHMP4CQ96CF2 233 aa17.59■□□□□ 0.41
NUP54-213ENST00000513352 TCEANC2Q96MN5 208 aa17.59■□□□□ 0.41
NUP54-213ENST00000513352 LRRC2Q9BYS8 371 aa17.59■□□□□ 0.41
NUP54-213ENST00000513352 GOPCQ9HD26 462 aa17.59■□□□□ 0.41
NUP54-213ENST00000513352 KCNH4Q9UQ05 1017 aa17.59■□□□□ 0.41
NUP54-213ENST00000513352 CCL15-CCL14A0A0B4J2E2 113 aa17.58■□□□□ 0.4
NUP54-213ENST00000513352 A0A1W2PRG0 241 aa17.58■□□□□ 0.4
NUP54-213ENST00000513352 MANSC4A6NHS7 340 aaPredicted RBP17.58■□□□□ 0.4
NUP54-213ENST00000513352 CETPP11597 493 aa17.58■□□□□ 0.4
NUP54-213ENST00000513352 USP14P54578 494 aa17.58■□□□□ 0.4
NUP54-213ENST00000513352 BACE1P56817 501 aa17.58■□□□□ 0.4
NUP54-213ENST00000513352 KIF23Q02241 960 aaPredicted RBP17.58■□□□□ 0.4
NUP54-213ENST00000513352 DGKZQ13574 1117 aa17.58■□□□□ 0.4
NUP54-213ENST00000513352 COL9A3Q14050 684 aaPredicted RBP17.58■□□□□ 0.4
NUP54-213ENST00000513352 WTAPQ15007 396 aa17.58■□□□□ 0.4
NUP54-213ENST00000513352 CCL15Q16663 113 aa17.58■□□□□ 0.4
NUP54-213ENST00000513352 IFIT1BQ5T764 474 aaKnown RBP17.58■□□□□ 0.4
NUP54-213ENST00000513352 USP17L2Q6R6M4 530 aa17.58■□□□□ 0.4
NUP54-213ENST00000513352 DHX32Q7L7V1 743 aaKnown RBP17.58■□□□□ 0.4
NUP54-213ENST00000513352 ENAHQ8N8S7 591 aaPredicted RBP17.58■□□□□ 0.4
NUP54-213ENST00000513352 UPF3BQ9BZI7 483 aaKnown RBP17.58■□□□□ 0.4
NUP54-213ENST00000513352 KIAA1683Q9H0B3 1180 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms