RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 WDR78Q5VTH9 848 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 MFSD14CQ5VZR4 134 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 C12orf42Q96LP6 360 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 FEZ1Q99689 392 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 LBHD1Q9BQE6 289 aaPredicted RBP17.1■□□□□ 0.33
VARS-227ENST00000489979 COL25A1Q9BXS0 654 aaPredicted RBP17.1■□□□□ 0.33
VARS-227ENST00000489979 TNNQ9UQP3 1299 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 FPGT-TNNI3KV9GXZ4 949 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 SLC15A5A6NIM6 579 aa17.09■□□□□ 0.33
VARS-227ENST00000489979 TRIM27P14373 513 aa17.09■□□□□ 0.33
VARS-227ENST00000489979 ZAP70P43403 619 aa17.09■□□□□ 0.33
VARS-227ENST00000489979 ATN1P54259 1190 aaPredicted RBP17.09■□□□□ 0.33
VARS-227ENST00000489979 FAM109BQ6ICB4 259 aaPredicted RBP17.09■□□□□ 0.33
VARS-227ENST00000489979 GUCD1Q96NT3 240 aa17.09■□□□□ 0.33
VARS-227ENST00000489979 GPR108Q9NPR9 543 aa17.09■□□□□ 0.33
VARS-227ENST00000489979 PIH1D3Q9NQM4 214 aaKnown RBP17.09■□□□□ 0.33
VARS-227ENST00000489979 DDX20Q9UHI6 824 aaKnown RBP17.09■□□□□ 0.33
VARS-227ENST00000489979 CYP7A1P22680 504 aa17.08■□□□□ 0.32
VARS-227ENST00000489979 PTPREP23469 700 aa17.08■□□□□ 0.32
VARS-227ENST00000489979 CNGA1P29973 690 aa17.08■□□□□ 0.32
VARS-227ENST00000489979 RAB3GAP1Q15042 981 aa17.08■□□□□ 0.32
VARS-227ENST00000489979 CATSPERGQ6ZRH7 1159 aa17.08■□□□□ 0.32
VARS-227ENST00000489979 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.08■□□□□ 0.32
VARS-227ENST00000489979 FAM161BQ96MY7 647 aa17.08■□□□□ 0.32
VARS-227ENST00000489979 USP14P54578 494 aa17.07■□□□□ 0.32
VARS-227ENST00000489979 ATP2B2Q01814 1243 aa17.07■□□□□ 0.32
VARS-227ENST00000489979 OS9Q13438 667 aaPredicted RBP17.07■□□□□ 0.32
VARS-227ENST00000489979 TATDN1Q6P1N9 297 aa17.07■□□□□ 0.32
VARS-227ENST00000489979 MIGA1Q8NAN2 632 aa17.07■□□□□ 0.32
VARS-227ENST00000489979 NPLOC4Q8TAT6 608 aa17.07■□□□□ 0.32
VARS-227ENST00000489979 LPAR1Q92633 364 aa17.07■□□□□ 0.32
VARS-227ENST00000489979 BTBD7Q9P203 1132 aa17.07■□□□□ 0.32
VARS-227ENST00000489979 IVNS1ABPQ9Y6Y0 642 aa17.07■□□□□ 0.32
VARS-227ENST00000489979 IPO8O15397 1037 aaKnown RBP17.06■□□□□ 0.32
VARS-227ENST00000489979 MSCO60682 206 aa17.06■□□□□ 0.32
VARS-227ENST00000489979 IGSF3O75054 1194 aa17.06■□□□□ 0.32
VARS-227ENST00000489979 VCAM1P19320 739 aa17.06■□□□□ 0.32
VARS-227ENST00000489979 CYP2C19P33261 490 aa17.06■□□□□ 0.32
VARS-227ENST00000489979 USP5P45974 858 aa17.06■□□□□ 0.32
VARS-227ENST00000489979 RTP1P59025 263 aa17.06■□□□□ 0.32
VARS-227ENST00000489979 GRB14Q14449 540 aa17.06■□□□□ 0.32
VARS-227ENST00000489979 CERKLQ49MI3 558 aaPredicted RBP17.06■□□□□ 0.32
VARS-227ENST00000489979 ACER1Q8TDN7 264 aa17.06■□□□□ 0.32
VARS-227ENST00000489979 CLUAP1Q96AJ1 413 aa17.06■□□□□ 0.32
VARS-227ENST00000489979 ZNF512BQ96KM6 892 aaPredicted RBP17.06■□□□□ 0.32
VARS-227ENST00000489979 KIAA1683Q9H0B3 1180 aa17.06■□□□□ 0.32
VARS-227ENST00000489979 PRKAG2Q9UGJ0 569 aa17.06■□□□□ 0.32
VARS-227ENST00000489979 SERPINB13Q9UIV8 391 aa17.06■□□□□ 0.32
VARS-227ENST00000489979 LTBP2Q14767 1821 aa17.05■□□□□ 0.32
VARS-227ENST00000489979 DNM1LO00429 736 aa17.05■□□□□ 0.32
VARS-227ENST00000489979 IDH1O75874 414 aaKnown RBP17.05■□□□□ 0.32
VARS-227ENST00000489979 HOXC6P09630 235 aa17.05■□□□□ 0.32
VARS-227ENST00000489979 POLA2Q14181 598 aa17.05■□□□□ 0.32
VARS-227ENST00000489979 ABCB5Q2M3G0 1257 aa17.05■□□□□ 0.32
VARS-227ENST00000489979 LBX2Q6XYB7 198 aa17.05■□□□□ 0.32
VARS-227ENST00000489979 TRPV1Q8NER1 839 aa17.05■□□□□ 0.32
VARS-227ENST00000489979 FRAT1Q92837 279 aaPredicted RBP17.05■□□□□ 0.32
VARS-227ENST00000489979 VCANP13611 3396 aa17.05■□□□□ 0.32
VARS-227ENST00000489979 RLFQ13129 1914 aa17.04■□□□□ 0.32
VARS-227ENST00000489979 SPDYE16A6NNV3 312 aaPredicted RBP17.04■□□□□ 0.32
VARS-227ENST00000489979 SURF6O75683 361 aaKnown RBP17.04■□□□□ 0.32
VARS-227ENST00000489979 GJC2Q5T442 439 aaPredicted RBP17.04■□□□□ 0.32
VARS-227ENST00000489979 ZNF697Q5TEC3 545 aa17.04■□□□□ 0.32
VARS-227ENST00000489979 MAGEB6Q8N7X4 407 aa17.04■□□□□ 0.32
VARS-227ENST00000489979 SSH3Q8TE77 659 aa17.04■□□□□ 0.32
VARS-227ENST00000489979 EHD4Q9H223 541 aa17.04■□□□□ 0.32
VARS-227ENST00000489979 RPAP3Q9H6T3 665 aaPredicted RBP17.04■□□□□ 0.32
VARS-227ENST00000489979 TLR7Q9NYK1 1049 aaKnown RBP17.04■□□□□ 0.32
VARS-227ENST00000489979 DBNLQ9UJU6 430 aaKnown RBP17.04■□□□□ 0.32
VARS-227ENST00000489979 EYSQ5T1H1 3165 aa17.03■□□□□ 0.32
VARS-227ENST00000489979 BCAR3O75815 825 aa17.03■□□□□ 0.32
VARS-227ENST00000489979 IGHA2P01877 340 aa17.03■□□□□ 0.32
VARS-227ENST00000489979 CYBAP13498 195 aa17.03■□□□□ 0.32
VARS-227ENST00000489979 CCDC8Q9H0W5 538 aaPredicted RBP17.03■□□□□ 0.32
VARS-227ENST00000489979 CABP5Q9NP86 173 aa17.03■□□□□ 0.32
VARS-227ENST00000489979 ATP11BQ9Y2G3 1177 aa17.03■□□□□ 0.32
VARS-227ENST00000489979 GUCY1A2P33402 732 aa17.02■□□□□ 0.32
VARS-227ENST00000489979 SHMT1P34896 483 aa17.02■□□□□ 0.32
VARS-227ENST00000489979 ATP8B2P98198 1209 aa17.02■□□□□ 0.32
VARS-227ENST00000489979 ANO1Q5XXA6 986 aa17.02■□□□□ 0.32
VARS-227ENST00000489979 DPP9Q86TI2 863 aa17.02■□□□□ 0.32
VARS-227ENST00000489979 TTC6Q86TZ1 520 aa17.02■□□□□ 0.32
VARS-227ENST00000489979 CERS3Q8IU89 383 aa17.02■□□□□ 0.32
VARS-227ENST00000489979 TMEM57Q8N5G2 664 aa17.02■□□□□ 0.32
VARS-227ENST00000489979 PLCD1P51178 756 aa17.01■□□□□ 0.31
VARS-227ENST00000489979 SHHQ15465 462 aa17.01■□□□□ 0.31
VARS-227ENST00000489979 SLC39A5Q6ZMH5 540 aa17.01■□□□□ 0.31
VARS-227ENST00000489979 ARRDC4Q8NCT1 418 aa17.01■□□□□ 0.31
VARS-227ENST00000489979 CDX2Q99626 313 aaPredicted RBP17.01■□□□□ 0.31
VARS-227ENST00000489979 MOV10L1Q9BXT6 1211 aaKnown RBP17.01■□□□□ 0.31
VARS-227ENST00000489979 C1orf115Q9H7X2 142 aa17.01■□□□□ 0.31
VARS-227ENST00000489979 PRDM5Q9NQX1 630 aaPredicted RBP17.01■□□□□ 0.31
VARS-227ENST00000489979 KBTBD13C9JR72 458 aa17■□□□□ 0.31
VARS-227ENST00000489979 ADORA2AP29274 412 aa17■□□□□ 0.31
VARS-227ENST00000489979 SEPT2Q15019 361 aa17■□□□□ 0.31
VARS-227ENST00000489979 C9orf50Q5SZB4 431 aa17■□□□□ 0.31
VARS-227ENST00000489979 OLFML2BQ68BL8 750 aa17■□□□□ 0.31
VARS-227ENST00000489979 EAF2Q96CJ1 260 aaPredicted RBP17■□□□□ 0.31
VARS-227ENST00000489979 ANTXR1Q9H6X2 564 aa17■□□□□ 0.31
VARS-227ENST00000489979 ZNF236Q9UL36 1845 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms