RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 CTR9Q6PD62 1173 aa30.03■■■□□ 2.4
HMGN1-217ENST00000489072 NBPF11Q86T75 865 aa30.03■■■□□ 2.4
HMGN1-217ENST00000489072 C12orf42Q96LP6 360 aa30.03■■■□□ 2.4
HMGN1-217ENST00000489072 KIAA1683Q9H0B3 1180 aa30.03■■■□□ 2.4
HMGN1-217ENST00000489072 ZBTB47Q9UFB7 747 aaPredicted RBP30.03■■■□□ 2.4
HMGN1-217ENST00000489072 GSG1L2A8MUP6 293 aa30.02■■■□□ 2.4
HMGN1-217ENST00000489072 M0R2C6 588 aa30.02■■■□□ 2.4
HMGN1-217ENST00000489072 MPHOSPH10O00566 681 aaKnown RBP30.02■■■□□ 2.4
HMGN1-217ENST00000489072 RAET1EQ8TD07 263 aa30.02■■■□□ 2.4
HMGN1-217ENST00000489072 DDRGK1Q96HY6 314 aa30.02■■■□□ 2.4
HMGN1-217ENST00000489072 TAOK2Q9UL54 1235 aa30.02■■■□□ 2.4
HMGN1-217ENST00000489072 CDK8P49336 464 aa30.01■■■□□ 2.39
HMGN1-217ENST00000489072 C16orf86Q6ZW13 317 aa30.01■■■□□ 2.39
HMGN1-217ENST00000489072 SUPT16HQ9Y5B9 1047 aaKnown RBP30.01■■■□□ 2.39
HMGN1-217ENST00000489072 TNPO2O14787 897 aaKnown RBP30■■■□□ 2.39
HMGN1-217ENST00000489072 GPAA1O43292 621 aa30■■■□□ 2.39
HMGN1-217ENST00000489072 PEX10O60683 326 aa30■■■□□ 2.39
HMGN1-217ENST00000489072 AKR1B1P15121 316 aa30■■■□□ 2.39
HMGN1-217ENST00000489072 HERVK_113P62684 666 aa30■■■□□ 2.39
HMGN1-217ENST00000489072 AMOTL1Q8IY63 956 aa30■■■□□ 2.39
HMGN1-217ENST00000489072 FSD1Q9BTV5 496 aa30■■■□□ 2.39
HMGN1-217ENST00000489072 MORF4L1Q9UBU8 362 aa30■■■□□ 2.39
HMGN1-217ENST00000489072 STAP2Q9UGK3 403 aa30■■■□□ 2.39
HMGN1-217ENST00000489072 MKI67P46013 3256 aaKnown RBP29.99■■■□□ 2.39
HMGN1-217ENST00000489072 A0A1W2PRG0 241 aa29.99■■■□□ 2.39
HMGN1-217ENST00000489072 MYCP01106 439 aaPredicted RBP29.99■■■□□ 2.39
HMGN1-217ENST00000489072 USP14P54578 494 aa29.99■■■□□ 2.39
HMGN1-217ENST00000489072 SMC5Q8IY18 1101 aa29.99■■■□□ 2.39
HMGN1-217ENST00000489072 SEC62Q99442 399 aaKnown RBP29.99■■■□□ 2.39
HMGN1-217ENST00000489072 TXNRD2Q9NNW7 524 aa29.99■■■□□ 2.39
HMGN1-217ENST00000489072 IGHDP01880 384 aa29.98■■■□□ 2.39
HMGN1-217ENST00000489072 VCAM1P19320 739 aa29.98■■■□□ 2.39
HMGN1-217ENST00000489072 GRK4P32298 578 aa29.98■■■□□ 2.39
HMGN1-217ENST00000489072 PDE1AP54750 535 aa29.98■■■□□ 2.39
HMGN1-217ENST00000489072 LRRFIP1Q32MZ4 808 aaKnown RBP29.98■■■□□ 2.39
HMGN1-217ENST00000489072 POTEEQ6S8J3 1075 aa29.98■■■□□ 2.39
HMGN1-217ENST00000489072 TMEM179Q6ZVK1 233 aa29.98■■■□□ 2.39
HMGN1-217ENST00000489072 CLEC10AQ8IUN9 316 aa29.98■■■□□ 2.39
HMGN1-217ENST00000489072 RWDD1Q9H446 243 aaPredicted RBP29.98■■■□□ 2.39
HMGN1-217ENST00000489072 EPB41L4AQ9HCS5 686 aaPredicted RBP29.98■■■□□ 2.39
HMGN1-217ENST00000489072 ARPP21Q9UBL0 812 aaPredicted RBP29.98■■■□□ 2.39
HMGN1-217ENST00000489072 FLT3LGP49771 235 aa29.97■■■□□ 2.39
HMGN1-217ENST00000489072 SBK1Q52WX2 424 aa29.97■■■□□ 2.39
HMGN1-217ENST00000489072 GIMAP6Q6P9H5 292 aa29.97■■■□□ 2.39
HMGN1-217ENST00000489072 ZMYM1Q5SVZ6 1142 aa29.96■■■□□ 2.39
HMGN1-217ENST00000489072 TMEM106CQ9BVX2 250 aa29.96■■■□□ 2.39
HMGN1-217ENST00000489072 LNPKQ9C0E8 428 aa29.96■■■□□ 2.39
HMGN1-217ENST00000489072 RBPJLQ9UBG7 517 aa29.96■■■□□ 2.39
HMGN1-217ENST00000489072 PLXNB2O15031 1838 aa29.95■■■□□ 2.39
HMGN1-217ENST00000489072 USP17L15C9J2P7 530 aa29.95■■■□□ 2.39
HMGN1-217ENST00000489072 USP17L13C9JLJ4 530 aa29.95■■■□□ 2.39
HMGN1-217ENST00000489072 USP17L11C9JVI0 530 aa29.95■■■□□ 2.39
HMGN1-217ENST00000489072 USP17L18D6R9N7 530 aa29.95■■■□□ 2.39
HMGN1-217ENST00000489072 USP17L22D6RA61 530 aa29.95■■■□□ 2.39
HMGN1-217ENST00000489072 USP17L17D6RBQ6 530 aa29.95■■■□□ 2.39
HMGN1-217ENST00000489072 USP17L19D6RCP7 530 aa29.95■■■□□ 2.39
HMGN1-217ENST00000489072 USP17L20D6RJB6 530 aa29.95■■■□□ 2.39
HMGN1-217ENST00000489072 EN2P19622 333 aaPredicted RBP29.95■■■□□ 2.39
HMGN1-217ENST00000489072 USP17L24Q0WX57 530 aa29.95■■■□□ 2.39
HMGN1-217ENST00000489072 CATSPERGQ6ZRH7 1159 aa29.95■■■□□ 2.39
HMGN1-217ENST00000489072 SIAH1Q8IUQ4 282 aa29.95■■■□□ 2.39
HMGN1-217ENST00000489072 COA7Q96BR5 231 aa29.95■■■□□ 2.39
HMGN1-217ENST00000489072 CCDC17Q96LX7 622 aa29.95■■■□□ 2.39
HMGN1-217ENST00000489072 GNAT2P19087 354 aa29.94■■■□□ 2.38
HMGN1-217ENST00000489072 MTFR1Q15390 333 aa29.94■■■□□ 2.38
HMGN1-217ENST00000489072 B4GALNT3Q6L9W6 998 aa29.94■■■□□ 2.38
HMGN1-217ENST00000489072 GREB1LQ9C091 1923 aaPredicted RBP29.93■■■□□ 2.38
HMGN1-217ENST00000489072 IRF5Q13568 498 aa29.93■■■□□ 2.38
HMGN1-217ENST00000489072 SLAIN1Q8ND83 568 aa29.93■■■□□ 2.38
HMGN1-217ENST00000489072 GPRC5AQ8NFJ5 357 aa29.93■■■□□ 2.38
HMGN1-217ENST00000489072 ROBO3Q96MS0 1386 aa29.92■■■□□ 2.38
HMGN1-217ENST00000489072 ADCY3O60266 1144 aa29.92■■■□□ 2.38
HMGN1-217ENST00000489072 ICA1Q05084 483 aa29.92■■■□□ 2.38
HMGN1-217ENST00000489072 Q3C1V9 767 aa29.92■■■□□ 2.38
HMGN1-217ENST00000489072 KIAA1755Q5JYT7 1200 aa29.92■■■□□ 2.38
HMGN1-217ENST00000489072 PAGR1Q9BTK6 254 aa29.92■■■□□ 2.38
HMGN1-217ENST00000489072 RPAP3Q9H6T3 665 aaPredicted RBP29.92■■■□□ 2.38
HMGN1-217ENST00000489072 RLFQ13129 1914 aa29.91■■■□□ 2.38
HMGN1-217ENST00000489072 MINDY4BA8MYZ0 360 aa29.91■■■□□ 2.38
HMGN1-217ENST00000489072 PATL2C9JE40 543 aaKnown RBP29.91■■■□□ 2.38
HMGN1-217ENST00000489072 ELNP15502 786 aa29.91■■■□□ 2.38
HMGN1-217ENST00000489072 ERVK-9P63128 1117 aa29.91■■■□□ 2.38
HMGN1-217ENST00000489072 ERVK-24P63145 666 aa29.91■■■□□ 2.38
HMGN1-217ENST00000489072 STK11IPQ8N1F8 1099 aa29.91■■■□□ 2.38
HMGN1-217ENST00000489072 GTF3C2Q8WUA4 911 aaPredicted RBP29.91■■■□□ 2.38
HMGN1-217ENST00000489072 EVI5LQ96CN4 794 aa29.91■■■□□ 2.38
HMGN1-217ENST00000489072 CNMDO75829 334 aa29.9■■■□□ 2.38
HMGN1-217ENST00000489072 APPP05067 770 aa29.9■■■□□ 2.38
HMGN1-217ENST00000489072 TDO2P48775 406 aa29.9■■■□□ 2.38
HMGN1-217ENST00000489072 IFNL3Q8IZI9 196 aa29.9■■■□□ 2.38
HMGN1-217ENST00000489072 BIN2Q9UBW5 565 aaPredicted RBP29.9■■■□□ 2.38
HMGN1-217ENST00000489072 GJD2Q9UKL4 321 aa29.9■■■□□ 2.38
HMGN1-217ENST00000489072 RASA1P20936 1047 aa29.89■■■□□ 2.38
HMGN1-217ENST00000489072 CHD1LQ86WJ1 897 aa29.89■■■□□ 2.38
HMGN1-217ENST00000489072 PXYLP1Q8TE99 480 aa29.89■■■□□ 2.38
HMGN1-217ENST00000489072 GNL3Q9BVP2 549 aaKnown RBP eCLIP29.89■■■□□ 2.38
HMGN1-217ENST00000489072 ARHGEF10LQ9HCE6 1279 aa29.89■■■□□ 2.38
HMGN1-217ENST00000489072 TMX2Q9Y320 296 aa29.89■■■□□ 2.38
HMGN1-217ENST00000489072 NUCB1Q02818 461 aa29.88■■■□□ 2.37
HMGN1-217ENST00000489072 CCDC129Q6ZRS4 1044 aa29.88■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms