RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 BCRP11274 1271 aa18.62■□□□□ 0.57
HMGA1-206ENST00000478214 SDSP20132 328 aa18.62■□□□□ 0.57
HMGA1-206ENST00000478214 PABPC4Q13310 644 aaKnown RBP eCLIP18.62■□□□□ 0.572e-23■■□□□ 12.2
HMGA1-206ENST00000478214 PKN2Q16513 984 aaKnown RBP18.62■□□□□ 0.57
HMGA1-206ENST00000478214 MCMDC2Q4G0Z9 681 aa18.62■□□□□ 0.57
HMGA1-206ENST00000478214 USP17L2Q6R6M4 530 aa18.62■□□□□ 0.57
HMGA1-206ENST00000478214 CLEC10AQ8IUN9 316 aa18.62■□□□□ 0.57
HMGA1-206ENST00000478214 SMCR8Q8TEV9 937 aaPredicted RBP18.62■□□□□ 0.57
HMGA1-206ENST00000478214 ARHGAP39Q9C0H5 1083 aa18.62■□□□□ 0.57
HMGA1-206ENST00000478214 KIAA1683Q9H0B3 1180 aa18.62■□□□□ 0.57
HMGA1-206ENST00000478214 NAPBQ9H115 298 aa18.62■□□□□ 0.57
HMGA1-206ENST00000478214 ASCC2Q9H1I8 757 aaPredicted RBP18.62■□□□□ 0.57
HMGA1-206ENST00000478214 PNMA3Q9UL41 463 aa18.62■□□□□ 0.57
HMGA1-206ENST00000478214 ROBO3Q96MS0 1386 aa18.61■□□□□ 0.57
HMGA1-206ENST00000478214 GSPT1P15170 499 aaKnown RBP18.61■□□□□ 0.57
HMGA1-206ENST00000478214 LACTBP83111 547 aaPredicted RBP18.61■□□□□ 0.57
HMGA1-206ENST00000478214 ZNF589Q86UQ0 364 aaPredicted RBP18.61■□□□□ 0.57
HMGA1-206ENST00000478214 LOC285556D6RIA3 1793 aa18.6■□□□□ 0.57
HMGA1-206ENST00000478214 A0A1W2PRG0 241 aa18.6■□□□□ 0.57
HMGA1-206ENST00000478214 RASA1P20936 1047 aa18.6■□□□□ 0.57
HMGA1-206ENST00000478214 OSBPP22059 807 aa18.6■□□□□ 0.57
HMGA1-206ENST00000478214 HOXA7P31268 230 aaPredicted RBP18.6■□□□□ 0.57
HMGA1-206ENST00000478214 TTC22Q5TAA0 569 aa18.6■□□□□ 0.57
HMGA1-206ENST00000478214 FBXO46Q6PJ61 603 aaPredicted RBP18.6■□□□□ 0.57
HMGA1-206ENST00000478214 SIAH1Q8IUQ4 282 aa18.6■□□□□ 0.57
HMGA1-206ENST00000478214 C12orf42Q96LP6 360 aa18.6■□□□□ 0.57
HMGA1-206ENST00000478214 MKNK2Q9HBH9 465 aa18.6■□□□□ 0.57
HMGA1-206ENST00000478214 PRDM1O75626 825 aa18.59■□□□□ 0.57
HMGA1-206ENST00000478214 CTGFP29279 349 aa18.59■□□□□ 0.57
HMGA1-206ENST00000478214 USP14P54578 494 aa18.59■□□□□ 0.57
HMGA1-206ENST00000478214 IRX3P78415 501 aaPredicted RBP18.59■□□□□ 0.57
HMGA1-206ENST00000478214 ICA1Q05084 483 aa18.59■□□□□ 0.57
HMGA1-206ENST00000478214 PPARAQ07869 468 aa18.59■□□□□ 0.57
HMGA1-206ENST00000478214 KIF22Q14807 665 aa18.59■□□□□ 0.57
HMGA1-206ENST00000478214 P2RX7Q99572 595 aaKnown RBP18.59■□□□□ 0.57
HMGA1-206ENST00000478214 HPS5Q9UPZ3 1129 aa18.59■□□□□ 0.57
HMGA1-206ENST00000478214 CCDC171Q6TFL3 1326 aa18.58■□□□□ 0.57
HMGA1-206ENST00000478214 CCDC85CA6NKD9 419 aa18.58■□□□□ 0.56
HMGA1-206ENST00000478214 PSMC4P43686 418 aa18.58■□□□□ 0.56
HMGA1-206ENST00000478214 ARHGEF6Q15052 776 aa18.58■□□□□ 0.56
HMGA1-206ENST00000478214 ANKRD13CQ8N6S4 541 aa18.58■□□□□ 0.56
HMGA1-206ENST00000478214 TRIM47Q96LD4 638 aa18.58■□□□□ 0.56
HMGA1-206ENST00000478214 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.58■□□□□ 0.56
HMGA1-206ENST00000478214 DIAPH3Q9NSV4 1193 aa18.58■□□□□ 0.56
HMGA1-206ENST00000478214 PTPN22Q9Y2R2 807 aa18.58■□□□□ 0.56
HMGA1-206ENST00000478214 HSPD1P10809 573 aaKnown RBP18.57■□□□□ 0.56
HMGA1-206ENST00000478214 VCAM1P19320 739 aa18.57■□□□□ 0.56
HMGA1-206ENST00000478214 ALX1Q15699 326 aa18.57■□□□□ 0.56
HMGA1-206ENST00000478214 CWC27Q6UX04 472 aaKnown RBP18.57■□□□□ 0.56
HMGA1-206ENST00000478214 KANSL2Q9H9L4 492 aa18.57■□□□□ 0.56
HMGA1-206ENST00000478214 USP17L15C9J2P7 530 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 USP17L13C9JLJ4 530 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 USP17L11C9JVI0 530 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 USP17L18D6R9N7 530 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 USP17L22D6RA61 530 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 USP17L17D6RBQ6 530 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 USP17L19D6RCP7 530 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 USP17L20D6RJB6 530 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 HIP1O00291 1037 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 FMNL1O95466 1100 aaPredicted RBP18.56■□□□□ 0.56
HMGA1-206ENST00000478214 FGAP02671 866 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 EEF2P13639 858 aaKnown RBP18.56■□□□□ 0.56
HMGA1-206ENST00000478214 GCLCP48506 637 aaPredicted RBP18.56■□□□□ 0.56
HMGA1-206ENST00000478214 HERVK_113P62684 666 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 ATP2B2Q01814 1243 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 CTDSPL2Q05D32 466 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 USP17L24Q0WX57 530 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 CENPQQ7L2Z9 268 aaPredicted RBP18.56■□□□□ 0.56
HMGA1-206ENST00000478214 ZNF444Q8N0Y2 327 aaPredicted RBP18.56■□□□□ 0.56
HMGA1-206ENST00000478214 ZNF287Q9HBT7 754 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 ARHGEF10LQ9HCE6 1279 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 TMX2Q9Y320 296 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 HTTP42858 3142 aa18.56■□□□□ 0.56
HMGA1-206ENST00000478214 SLC3A2P08195 630 aaKnown RBP18.55■□□□□ 0.56
HMGA1-206ENST00000478214 PDE4BQ07343 736 aa18.55■□□□□ 0.56
HMGA1-206ENST00000478214 FAM110CQ1W6H9 321 aa18.55■□□□□ 0.56
HMGA1-206ENST00000478214 KIAA1755Q5JYT7 1200 aa18.55■□□□□ 0.56
HMGA1-206ENST00000478214 RPAP3Q9H6T3 665 aaPredicted RBP18.55■□□□□ 0.56
HMGA1-206ENST00000478214 ZSWIM8A7E2V4 1837 aa18.54■□□□□ 0.56
HMGA1-206ENST00000478214 PEX10O60683 326 aa18.54■□□□□ 0.56
HMGA1-206ENST00000478214 MFAP1P55081 439 aaKnown RBP18.54■□□□□ 0.56
HMGA1-206ENST00000478214 CATSPERGQ6ZRH7 1159 aa18.54■□□□□ 0.56
HMGA1-206ENST00000478214 SKAP1Q86WV1 359 aa18.54■□□□□ 0.56
HMGA1-206ENST00000478214 SH2D4AQ9H788 454 aa18.54■□□□□ 0.56
HMGA1-206ENST00000478214 INCENPQ9NQS7 918 aa18.54■□□□□ 0.56
HMGA1-206ENST00000478214 ANAPC4Q9UJX5 808 aa18.54■□□□□ 0.56
HMGA1-206ENST00000478214 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.54■□□□□ 0.56
HMGA1-206ENST00000478214 TACC3Q9Y6A5 838 aa18.54■□□□□ 0.56
HMGA1-206ENST00000478214 PTCH2Q9Y6C5 1203 aa18.54■□□□□ 0.56
HMGA1-206ENST00000478214 IGKV6D-41A0A0C4DH26 115 aa18.53■□□□□ 0.56
HMGA1-206ENST00000478214 GNRH1P01148 92 aa18.53■□□□□ 0.56
HMGA1-206ENST00000478214 FCGRTP55899 365 aa18.53■□□□□ 0.56
HMGA1-206ENST00000478214 FAM47AQ5JRC9 791 aa18.53■□□□□ 0.56
HMGA1-206ENST00000478214 POTEEQ6S8J3 1075 aa18.53■□□□□ 0.56
HMGA1-206ENST00000478214 SPICE1Q8N0Z3 855 aa18.53■□□□□ 0.56
HMGA1-206ENST00000478214 VCPKMTQ9H867 229 aa18.53■□□□□ 0.56
HMGA1-206ENST00000478214 TXNRD2Q9NNW7 524 aa18.53■□□□□ 0.56
HMGA1-206ENST00000478214 RBPJLQ9UBG7 517 aa18.53■□□□□ 0.56
HMGA1-206ENST00000478214 MORF4L1Q9UBU8 362 aa18.53■□□□□ 0.56
HMGA1-206ENST00000478214 SRRDQ9UH36 339 aa18.53■□□□□ 0.56
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