RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 EMILIN3Q9NT22 766 aa22.64■■□□□ 1.21
PTCD3-210ENST00000473829 C19orf81C9J6K1 198 aa22.63■■□□□ 1.21
PTCD3-210ENST00000473829 BCRP11274 1271 aa22.63■■□□□ 1.21
PTCD3-210ENST00000473829 MCMDC2Q4G0Z9 681 aa22.63■■□□□ 1.21
PTCD3-210ENST00000473829 TMEM179Q6ZVK1 233 aa22.63■■□□□ 1.21
PTCD3-210ENST00000473829 OTOP1Q7RTM1 612 aa22.63■■□□□ 1.21
PTCD3-210ENST00000473829 NACAP1Q9BZK3 213 aa22.63■■□□□ 1.21
PTCD3-210ENST00000473829 TMOD4Q9NZQ9 345 aa22.63■■□□□ 1.21
PTCD3-210ENST00000473829 A0A1W2PRG0 241 aa22.62■■□□□ 1.21
PTCD3-210ENST00000473829 RASA1P20936 1047 aa22.62■■□□□ 1.21
PTCD3-210ENST00000473829 FEZ1Q99689 392 aa22.62■■□□□ 1.21
PTCD3-210ENST00000473829 NAPBQ9H115 298 aa22.62■■□□□ 1.21
PTCD3-210ENST00000473829 TRIM17Q9Y577 477 aa22.62■■□□□ 1.21
PTCD3-210ENST00000473829 MGAMO43451 1857 aa22.61■■□□□ 1.21
PTCD3-210ENST00000473829 CTGFP29279 349 aa22.61■■□□□ 1.21
PTCD3-210ENST00000473829 LACTBP83111 547 aaPredicted RBP22.61■■□□□ 1.21
PTCD3-210ENST00000473829 USP17L2Q6R6M4 530 aa22.61■■□□□ 1.21
PTCD3-210ENST00000473829 SKAP1Q86WV1 359 aa22.61■■□□□ 1.21
PTCD3-210ENST00000473829 SIAH1Q8IUQ4 282 aa22.61■■□□□ 1.21
PTCD3-210ENST00000473829 CCDC17Q96LX7 622 aa22.61■■□□□ 1.21
PTCD3-210ENST00000473829 KIAA1683Q9H0B3 1180 aa22.61■■□□□ 1.21
PTCD3-210ENST00000473829 ASCC2Q9H1I8 757 aaPredicted RBP22.61■■□□□ 1.21
PTCD3-210ENST00000473829 CCDC171Q6TFL3 1326 aa22.6■■□□□ 1.21
PTCD3-210ENST00000473829 CAPN15O75808 1086 aa22.6■■□□□ 1.21
PTCD3-210ENST00000473829 ECM2O94769 699 aaPredicted RBP22.6■■□□□ 1.21
PTCD3-210ENST00000473829 PPARAQ07869 468 aa22.6■■□□□ 1.21
PTCD3-210ENST00000473829 SMCR8Q8TEV9 937 aaPredicted RBP22.6■■□□□ 1.21
PTCD3-210ENST00000473829 C12orf42Q96LP6 360 aa22.6■■□□□ 1.21
PTCD3-210ENST00000473829 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.6■■□□□ 1.21
PTCD3-210ENST00000473829 PNMA3Q9UL41 463 aa22.6■■□□□ 1.21
PTCD3-210ENST00000473829 CENPFP49454 3210 aa22.59■■□□□ 1.21
PTCD3-210ENST00000473829 PRDM1O75626 825 aa22.59■■□□□ 1.21
PTCD3-210ENST00000473829 ICA1Q05084 483 aa22.59■■□□□ 1.21
PTCD3-210ENST00000473829 EFCC1Q9HA90 598 aa22.59■■□□□ 1.21
PTCD3-210ENST00000473829 HSPD1P10809 573 aaKnown RBP22.58■■□□□ 1.21
PTCD3-210ENST00000473829 HOXA7P31268 230 aaPredicted RBP22.58■■□□□ 1.21
PTCD3-210ENST00000473829 PABPC4Q13310 644 aaKnown RBP eCLIP22.58■■□□□ 1.21
PTCD3-210ENST00000473829 PKN2Q16513 984 aaKnown RBP22.58■■□□□ 1.21
PTCD3-210ENST00000473829 CWC27Q6UX04 472 aaKnown RBP22.58■■□□□ 1.21
PTCD3-210ENST00000473829 CENPQQ7L2Z9 268 aaPredicted RBP22.58■■□□□ 1.21
PTCD3-210ENST00000473829 IL25Q9H293 177 aa22.58■■□□□ 1.21
PTCD3-210ENST00000473829 DIAPH3Q9NSV4 1193 aa22.58■■□□□ 1.21
PTCD3-210ENST00000473829 TACC3Q9Y6A5 838 aa22.58■■□□□ 1.21
PTCD3-210ENST00000473829 VCAM1P19320 739 aa22.57■■□□□ 1.2
PTCD3-210ENST00000473829 OSBPP22059 807 aa22.57■■□□□ 1.2
PTCD3-210ENST00000473829 USP14P54578 494 aa22.57■■□□□ 1.2
PTCD3-210ENST00000473829 KIAA1755Q5JYT7 1200 aa22.57■■□□□ 1.2
PTCD3-210ENST00000473829 FBXO46Q6PJ61 603 aaPredicted RBP22.57■■□□□ 1.2
PTCD3-210ENST00000473829 ANKRD13CQ8N6S4 541 aa22.57■■□□□ 1.2
PTCD3-210ENST00000473829 MKNK2Q9HBH9 465 aa22.57■■□□□ 1.2
PTCD3-210ENST00000473829 IRX3P78415 501 aaPredicted RBP22.56■■□□□ 1.2
PTCD3-210ENST00000473829 CTDSPL2Q05D32 466 aa22.56■■□□□ 1.2
PTCD3-210ENST00000473829 ALX1Q15699 326 aa22.56■■□□□ 1.2
PTCD3-210ENST00000473829 TRIM47Q96LD4 638 aa22.56■■□□□ 1.2
PTCD3-210ENST00000473829 P2RX7Q99572 595 aaKnown RBP22.56■■□□□ 1.2
PTCD3-210ENST00000473829 HPS5Q9UPZ3 1129 aa22.56■■□□□ 1.2
PTCD3-210ENST00000473829 LAMA4Q16363 1823 aa22.56■■□□□ 1.2
PTCD3-210ENST00000473829 PEX10O60683 326 aa22.55■■□□□ 1.2
PTCD3-210ENST00000473829 FGAP02671 866 aa22.55■■□□□ 1.2
PTCD3-210ENST00000473829 EEF2P13639 858 aaKnown RBP22.55■■□□□ 1.2
PTCD3-210ENST00000473829 POTEEQ6S8J3 1075 aa22.55■■□□□ 1.2
PTCD3-210ENST00000473829 INCENPQ9NQS7 918 aa22.55■■□□□ 1.2
PTCD3-210ENST00000473829 PTPN22Q9Y2R2 807 aa22.55■■□□□ 1.2
PTCD3-210ENST00000473829 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.55■■□□□ 1.2
PTCD3-210ENST00000473829 TMX2Q9Y320 296 aa22.55■■□□□ 1.2
PTCD3-210ENST00000473829 RLFQ13129 1914 aa22.55■■□□□ 1.2
PTCD3-210ENST00000473829 MYH4Q9Y623 1939 aa22.55■■□□□ 1.2
PTCD3-210ENST00000473829 HIP1O00291 1037 aa22.54■■□□□ 1.2
PTCD3-210ENST00000473829 PSMC4P43686 418 aa22.54■■□□□ 1.2
PTCD3-210ENST00000473829 HERVK_113P62684 666 aa22.54■■□□□ 1.2
PTCD3-210ENST00000473829 KIF22Q14807 665 aa22.54■■□□□ 1.2
PTCD3-210ENST00000473829 KANSL2Q9H9L4 492 aa22.54■■□□□ 1.2
PTCD3-210ENST00000473829 ARHGEF10LQ9HCE6 1279 aa22.54■■□□□ 1.2
PTCD3-210ENST00000473829 ANAPC4Q9UJX5 808 aa22.54■■□□□ 1.2
PTCD3-210ENST00000473829 PARP14Q460N5 1801 aa22.54■■□□□ 1.2
PTCD3-210ENST00000473829 ZMYM6O95789 1325 aa22.54■■□□□ 1.2
PTCD3-210ENST00000473829 PLIN4Q96Q06 1357 aa22.53■■□□□ 1.2
PTCD3-210ENST00000473829 IGKV6D-41A0A0C4DH26 115 aa22.53■■□□□ 1.2
PTCD3-210ENST00000473829 GCLCP48506 637 aaPredicted RBP22.53■■□□□ 1.2
PTCD3-210ENST00000473829 FAM110CQ1W6H9 321 aa22.53■■□□□ 1.2
PTCD3-210ENST00000473829 RPAP3Q9H6T3 665 aaPredicted RBP22.53■■□□□ 1.2
PTCD3-210ENST00000473829 TXNRD2Q9NNW7 524 aa22.53■■□□□ 1.2
PTCD3-210ENST00000473829 A0A0G2JMZ2 1700 aa22.52■■□□□ 1.2
PTCD3-210ENST00000473829 CCDC85CA6NKD9 419 aa22.52■■□□□ 1.2
PTCD3-210ENST00000473829 USP17L15C9J2P7 530 aa22.52■■□□□ 1.2
PTCD3-210ENST00000473829 USP17L13C9JLJ4 530 aa22.52■■□□□ 1.2
PTCD3-210ENST00000473829 USP17L11C9JVI0 530 aa22.52■■□□□ 1.2
PTCD3-210ENST00000473829 USP17L18D6R9N7 530 aa22.52■■□□□ 1.2
PTCD3-210ENST00000473829 USP17L22D6RA61 530 aa22.52■■□□□ 1.2
PTCD3-210ENST00000473829 USP17L17D6RBQ6 530 aa22.52■■□□□ 1.2
PTCD3-210ENST00000473829 USP17L19D6RCP7 530 aa22.52■■□□□ 1.2
PTCD3-210ENST00000473829 USP17L20D6RJB6 530 aa22.52■■□□□ 1.2
PTCD3-210ENST00000473829 ATP2B2Q01814 1243 aa22.52■■□□□ 1.2
PTCD3-210ENST00000473829 PDE4BQ07343 736 aa22.52■■□□□ 1.2
PTCD3-210ENST00000473829 USP17L24Q0WX57 530 aa22.52■■□□□ 1.2
PTCD3-210ENST00000473829 FAM47AQ5JRC9 791 aa22.52■■□□□ 1.2
PTCD3-210ENST00000473829 CATSPERGQ6ZRH7 1159 aa22.52■■□□□ 1.2
PTCD3-210ENST00000473829 ZNF444Q8N0Y2 327 aaPredicted RBP22.52■■□□□ 1.2
PTCD3-210ENST00000473829 NBPF3Q9H094 633 aa22.52■■□□□ 1.2
PTCD3-210ENST00000473829 VCPKMTQ9H867 229 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms