RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-206	ENST00000441089	MBTPS1	Q14703	1052 aa		6.3	□□□□□ -1.4
PTPN4-206	ENST00000441089	SLFNL1	Q499Z3	407 aa		6.3	□□□□□ -1.4
PTPN4-206	ENST00000441089	SHISA2	Q6UWI4	295 aa		6.3	□□□□□ -1.4
PTPN4-206	ENST00000441089	CLEC4G	Q6UXB4	293 aa		6.3	□□□□□ -1.4
PTPN4-206	ENST00000441089	C20orf204	Q6ZNR8	217 aa		6.3	□□□□□ -1.4
PTPN4-206	ENST00000441089	OTOP1	Q7RTM1	612 aa		6.3	□□□□□ -1.4
PTPN4-206	ENST00000441089	NBPF11	Q86T75	865 aa		6.3	□□□□□ -1.4
PTPN4-206	ENST00000441089	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	6.3	□□□□□ -1.4
PTPN4-206	ENST00000441089	TRPM4	Q8TD43	1214 aa		6.3	□□□□□ -1.4
PTPN4-206	ENST00000441089	TEX13A	Q9BXU3	409 aa	Predicted RBP	6.3	□□□□□ -1.4
PTPN4-206	ENST00000441089	SLC52A2	Q9HAB3	445 aa		6.3	□□□□□ -1.4
PTPN4-206	ENST00000441089	MRS2	Q9HD23	443 aa		6.3	□□□□□ -1.4
PTPN4-206	ENST00000441089	ZDHHC3	Q9NYG2	299 aa		6.3	□□□□□ -1.4
PTPN4-206	ENST00000441089	CNOT7	Q9UIV1	285 aa	Known RBP	6.3	□□□□□ -1.4
PTPN4-206	ENST00000441089	ZNF652	Q9Y2D9	606 aa		6.3	□□□□□ -1.4
PTPN4-206	ENST00000441089	MUC3A	Q02505	3323 aa		6.3	□□□□□ -1.4
PTPN4-206	ENST00000441089	MRC1	P22897	1456 aa		6.29	□□□□□ -1.4
PTPN4-206	ENST00000441089	LAMB4	A4D0S4	1761 aa		6.29	□□□□□ -1.4
PTPN4-206	ENST00000441089		A6NJY4	79 aa		6.29	□□□□□ -1.4
PTPN4-206	ENST00000441089	CAMTA2	O94983	1202 aa		6.29	□□□□□ -1.4
PTPN4-206	ENST00000441089	ADGRE1	Q14246	886 aa		6.29	□□□□□ -1.4
PTPN4-206	ENST00000441089	SH3PXD2A	Q5TCZ1	1133 aa		6.29	□□□□□ -1.4
PTPN4-206	ENST00000441089	SUPT20H	Q8NEM7	779 aa		6.29	□□□□□ -1.4
PTPN4-206	ENST00000441089	DPF3	Q92784	378 aa		6.29	□□□□□ -1.4
PTPN4-206	ENST00000441089	PRO3102	Q9H379	93 aa		6.29	□□□□□ -1.4
PTPN4-206	ENST00000441089	PTPN22	Q9Y2R2	807 aa		6.29	□□□□□ -1.4
PTPN4-206	ENST00000441089	NR2E3	Q9Y5X4	410 aa		6.29	□□□□□ -1.4
PTPN4-206	ENST00000441089	KDM3B	Q7LBC6	1761 aa		6.29	□□□□□ -1.4
PTPN4-206	ENST00000441089	EYS	Q5T1H1	3165 aa		6.28	□□□□□ -1.4
PTPN4-206	ENST00000441089	BTBD11	A6QL63	1104 aa		6.28	□□□□□ -1.4
PTPN4-206	ENST00000441089	SIN3B	O75182	1162 aa		6.28	□□□□□ -1.4
PTPN4-206	ENST00000441089	PLA2G5	P39877	138 aa		6.28	□□□□□ -1.4
PTPN4-206	ENST00000441089	EIF4A2	Q14240	407 aa	Known RBP	6.28	□□□□□ -1.4
PTPN4-206	ENST00000441089	AOC3	Q16853	763 aa		6.28	□□□□□ -1.4
PTPN4-206	ENST00000441089	LRRC69	Q6ZNQ3	347 aa		6.28	□□□□□ -1.4
PTPN4-206	ENST00000441089	DEFB123	Q8N688	67 aa		6.28	□□□□□ -1.4
PTPN4-206	ENST00000441089	PNISR	Q8TF01	805 aa	Known RBP	6.28	□□□□□ -1.4
PTPN4-206	ENST00000441089	DPF2	Q92785	391 aa		6.28	□□□□□ -1.4
PTPN4-206	ENST00000441089	RPGR	Q92834	1020 aa	Known RBP	6.28	□□□□□ -1.4
PTPN4-206	ENST00000441089	ERO1A	Q96HE7	468 aa		6.28	□□□□□ -1.4
PTPN4-206	ENST00000441089	GOLGA2P5	Q9HBQ8	144 aa		6.28	□□□□□ -1.4
PTPN4-206	ENST00000441089	POLK	Q9UBT6	870 aa		6.28	□□□□□ -1.4
PTPN4-206	ENST00000441089	COG6	Q9Y2V7	657 aa		6.28	□□□□□ -1.4
PTPN4-206	ENST00000441089	COL3A1	P02461	1466 aa	Predicted RBP	6.28	□□□□□ -1.4
PTPN4-206	ENST00000441089	CDK2AP1	O14519	115 aa		6.27	□□□□□ -1.41
PTPN4-206	ENST00000441089	SLC39A6	Q13433	755 aa		6.27	□□□□□ -1.41
PTPN4-206	ENST00000441089	ARHGEF6	Q15052	776 aa		6.27	□□□□□ -1.41
PTPN4-206	ENST00000441089	SLC4A8	Q2Y0W8	1093 aa		6.27	□□□□□ -1.41
PTPN4-206	ENST00000441089	CRY2	Q49AN0	593 aa		6.27	□□□□□ -1.41
PTPN4-206	ENST00000441089	DLK2	Q6UY11	383 aa		6.27	□□□□□ -1.41
PTPN4-206	ENST00000441089	TTC5	Q8N0Z6	440 aa		6.27	□□□□□ -1.41
PTPN4-206	ENST00000441089	TNFRSF25	Q93038	417 aa		6.27	□□□□□ -1.41
PTPN4-206	ENST00000441089	FAM122A	Q96E09	287 aa		6.27	□□□□□ -1.41
PTPN4-206	ENST00000441089	ZNF333	Q96JL9	665 aa		6.27	□□□□□ -1.41
PTPN4-206	ENST00000441089	HTATIP2	Q9BUP3	242 aa		6.27	□□□□□ -1.41
PTPN4-206	ENST00000441089	SSBP4	Q9BWG4	385 aa	Predicted RBP	6.27	□□□□□ -1.41
PTPN4-206	ENST00000441089	MUC6	Q6W4X9	2439 aa		6.27	□□□□□ -1.41
PTPN4-206	ENST00000441089	TAF1	P21675	1872 aa		6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	ADM5	C9JUS6	153 aa		6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	SOX1	O00570	391 aa	Predicted RBP	6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	RAD17	O75943	681 aa		6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	H2AFB1	P0C5Y9	115 aa		6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	H2AFB2	P0C5Z0	115 aa		6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	ALAS2	P22557	587 aa		6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	HOXA10	P31260	410 aa	Predicted RBP	6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	ADH7	P40394	386 aa		6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	INHBE	P58166	350 aa		6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	NRG1	Q02297	640 aa	Predicted RBP	6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	TRIM28	Q13263	835 aa	Known RBP	6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	LAMC2	Q13753	1193 aa		6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	SLC9C1	Q4G0N8	1177 aa		6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	FAM9B	Q8IZU0	186 aa		6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	CDCA5	Q96FF9	252 aa		6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	EFCC1	Q9HA90	598 aa		6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	NIP7	Q9Y221	180 aa	Known RBP eCLIP	6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	PCDHGA11	Q9Y5H2	935 aa		6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	ZNF646	O15015	1829 aa	Predicted RBP	6.26	□□□□□ -1.41
PTPN4-206	ENST00000441089	SPDYE3	A6NKU9	549 aa		6.25	□□□□□ -1.41
PTPN4-206	ENST00000441089	RPS12	P25398	132 aa	Known RBP	6.25	□□□□□ -1.41
PTPN4-206	ENST00000441089	FLII	Q13045	1269 aa		6.25	□□□□□ -1.41
PTPN4-206	ENST00000441089	SEMA3F	Q13275	785 aa		6.25	□□□□□ -1.41
PTPN4-206	ENST00000441089	MAP7D1	Q3KQU3	841 aa		6.25	□□□□□ -1.41
PTPN4-206	ENST00000441089	TBCEL	Q5QJ74	424 aa		6.25	□□□□□ -1.41
PTPN4-206	ENST00000441089	WWC1	Q8IX03	1113 aa		6.25	□□□□□ -1.41
PTPN4-206	ENST00000441089	PLPP7	Q8NBV4	271 aa		6.25	□□□□□ -1.41
PTPN4-206	ENST00000441089	RBM17	Q96I25	401 aa	Known RBP	6.25	□□□□□ -1.41
PTPN4-206	ENST00000441089	YTHDC1	Q96MU7	727 aa	Known RBP	6.25	□□□□□ -1.41
PTPN4-206	ENST00000441089	CRAMP1	Q96RY5	1269 aa		6.25	□□□□□ -1.41
PTPN4-206	ENST00000441089	RTFDC1	Q9BY42	306 aa	Predicted RBP	6.25	□□□□□ -1.41
PTPN4-206	ENST00000441089	NYX	Q9GZU5	481 aa		6.25	□□□□□ -1.41
PTPN4-206	ENST00000441089	ZNF609	O15014	1411 aa		6.25	□□□□□ -1.41
PTPN4-206	ENST00000441089	RIC1	Q4ADV7	1423 aa		6.25	□□□□□ -1.41
PTPN4-206	ENST00000441089	LAMB1	P07942	1786 aa		6.24	□□□□□ -1.41
PTPN4-206	ENST00000441089	HEG1	Q9ULI3	1381 aa		6.24	□□□□□ -1.41
PTPN4-206	ENST00000441089		A0A0A0MRY4	1105 aa		6.24	□□□□□ -1.41
PTPN4-206	ENST00000441089	PRAMEF22	A3QJZ6	481 aa		6.24	□□□□□ -1.41
PTPN4-206	ENST00000441089	PIK3CD	O00329	1044 aa		6.24	□□□□□ -1.41
PTPN4-206	ENST00000441089	EML1	O00423	815 aa		6.24	□□□□□ -1.41
PTPN4-206	ENST00000441089	RNMT	O43148	476 aa	Known RBP	6.24	□□□□□ -1.41

Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms