RNA–Protein interactions for RNA: ENST00000439717.2

HSPG2-206, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 637 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-206ENST00000439717 DSCC1Q9BVC3 393 aa14.06□□□□□ -0.16
HSPG2-206ENST00000439717 KIAA1683Q9H0B3 1180 aa14.06□□□□□ -0.16
HSPG2-206ENST00000439717 TMOD4Q9NZQ9 345 aa14.06□□□□□ -0.16
HSPG2-206ENST00000439717 USP14P54578 494 aa14.05□□□□□ -0.16
HSPG2-206ENST00000439717 HMGCS2P54868 508 aa14.05□□□□□ -0.16
HSPG2-206ENST00000439717 USP17L2Q6R6M4 530 aa14.05□□□□□ -0.16
HSPG2-206ENST00000439717 SKAP1Q86WV1 359 aa14.05□□□□□ -0.16
HSPG2-206ENST00000439717 C12orf42Q96LP6 360 aa14.05□□□□□ -0.16
HSPG2-206ENST00000439717 PARK7Q99497 189 aaKnown RBP14.05□□□□□ -0.16
HSPG2-206ENST00000439717 FEZ1Q99689 392 aa14.05□□□□□ -0.16
HSPG2-206ENST00000439717 KANSL2Q9H9L4 492 aa14.05□□□□□ -0.16
HSPG2-206ENST00000439717 PTPRFP10586 1907 aa14.04□□□□□ -0.16
HSPG2-206ENST00000439717 TLR2O60603 784 aa14.04□□□□□ -0.16
HSPG2-206ENST00000439717 FKTNO75072 461 aa14.04□□□□□ -0.16
HSPG2-206ENST00000439717 FGRP09769 529 aa14.04□□□□□ -0.16
HSPG2-206ENST00000439717 PCP11498 1178 aaKnown RBP14.04□□□□□ -0.16
HSPG2-206ENST00000439717 ICA1Q05084 483 aa14.04□□□□□ -0.16
HSPG2-206ENST00000439717 STK11IPQ8N1F8 1099 aa14.04□□□□□ -0.16
HSPG2-206ENST00000439717 R3HDMLQ9H3Y0 253 aa14.04□□□□□ -0.16
HSPG2-206ENST00000439717 SH2D4AQ9H788 454 aa14.04□□□□□ -0.16
HSPG2-206ENST00000439717 ARHGEF10LQ9HCE6 1279 aa14.04□□□□□ -0.16
HSPG2-206ENST00000439717 CTNNA3Q9UI47 895 aa14.04□□□□□ -0.16
HSPG2-206ENST00000439717 PNMA3Q9UL41 463 aa14.04□□□□□ -0.16
HSPG2-206ENST00000439717 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.04□□□□□ -0.16
HSPG2-206ENST00000439717 LOC285556D6RIA3 1793 aa14.04□□□□□ -0.16
HSPG2-206ENST00000439717 MYH8P13535 1937 aa14.03□□□□□ -0.16
HSPG2-206ENST00000439717 SGSM2O43147 1006 aa14.03□□□□□ -0.16
HSPG2-206ENST00000439717 HOXA7P31268 230 aaPredicted RBP14.03□□□□□ -0.16
HSPG2-206ENST00000439717 CTDSPL2Q05D32 466 aa14.03□□□□□ -0.16
HSPG2-206ENST00000439717 TREML2Q5T2D2 321 aa14.03□□□□□ -0.16
HSPG2-206ENST00000439717 ACER1Q8TDN7 264 aa14.03□□□□□ -0.16
HSPG2-206ENST00000439717 ZNF296Q8WUU4 475 aaPredicted RBP14.03□□□□□ -0.16
HSPG2-206ENST00000439717 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.03□□□□□ -0.16
HSPG2-206ENST00000439717 EMILIN3Q9NT22 766 aa14.03□□□□□ -0.16
HSPG2-206ENST00000439717 PLIN4Q96Q06 1357 aa14.02□□□□□ -0.17
HSPG2-206ENST00000439717 IGKV6D-41A0A0C4DH26 115 aa14.02□□□□□ -0.17
HSPG2-206ENST00000439717 ZNF213O14771 459 aa14.02□□□□□ -0.17
HSPG2-206ENST00000439717 ORC4O43929 436 aa14.02□□□□□ -0.17
HSPG2-206ENST00000439717 PRDM1O75626 825 aa14.02□□□□□ -0.17
HSPG2-206ENST00000439717 OSBPP22059 807 aa14.02□□□□□ -0.17
HSPG2-206ENST00000439717 NT5C2P49902 561 aa14.02□□□□□ -0.17
HSPG2-206ENST00000439717 PPP4R3BQ5MIZ7 849 aa14.02□□□□□ -0.17
HSPG2-206ENST00000439717 SIAH1Q8IUQ4 282 aa14.02□□□□□ -0.17
HSPG2-206ENST00000439717 IL25Q9H293 177 aa14.02□□□□□ -0.17
HSPG2-206ENST00000439717 RNF41Q9H4P4 317 aaPredicted RBP14.02□□□□□ -0.17
HSPG2-206ENST00000439717 TMX2Q9Y320 296 aa14.02□□□□□ -0.17
HSPG2-206ENST00000439717 ADGRA2Q96PE1 1338 aa14.01□□□□□ -0.17
HSPG2-206ENST00000439717 A0A1W2PRG0 241 aa14.01□□□□□ -0.17
HSPG2-206ENST00000439717 TSPY3P0CV98 308 aa14.01□□□□□ -0.17
HSPG2-206ENST00000439717 TSPY8P0CW00 308 aa14.01□□□□□ -0.17
HSPG2-206ENST00000439717 CYP2C8P10632 490 aa14.01□□□□□ -0.17
HSPG2-206ENST00000439717 EEF2P13639 858 aaKnown RBP14.01□□□□□ -0.17
HSPG2-206ENST00000439717 TFAP4Q01664 338 aa14.01□□□□□ -0.17
HSPG2-206ENST00000439717 SP3Q02447 781 aa14.01□□□□□ -0.17
HSPG2-206ENST00000439717 DGKZQ13574 1117 aa14.01□□□□□ -0.17
HSPG2-206ENST00000439717 IMMTQ16891 758 aaKnown RBP14.01□□□□□ -0.17
HSPG2-206ENST00000439717 COL13A1Q5TAT6 717 aaPredicted RBP14.01□□□□□ -0.17
HSPG2-206ENST00000439717 CASC1Q6TDU7 716 aa14.01□□□□□ -0.17
HSPG2-206ENST00000439717 C17orf99Q6UX52 265 aa14.01□□□□□ -0.17
HSPG2-206ENST00000439717 NEDD1Q8NHV4 660 aa14.01□□□□□ -0.17
HSPG2-206ENST00000439717 STAG1Q8WVM7 1258 aa14.01□□□□□ -0.17
HSPG2-206ENST00000439717 LPAR1Q92633 364 aa14.01□□□□□ -0.17
HSPG2-206ENST00000439717 NYAP2Q9P242 653 aa14.01□□□□□ -0.17
HSPG2-206ENST00000439717 SYNPO2Q9UMS6 1093 aa14.01□□□□□ -0.17
HSPG2-206ENST00000439717 GREB1LQ9C091 1923 aaPredicted RBP14□□□□□ -0.17
HSPG2-206ENST00000439717 TSPY2A6NKD2 308 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 USP17L15C9J2P7 530 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 USP17L13C9JLJ4 530 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 USP17L11C9JVI0 530 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 USP17L18D6R9N7 530 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 USP17L22D6RA61 530 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 USP17L17D6RBQ6 530 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 USP17L19D6RCP7 530 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 USP17L20D6RJB6 530 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 VCAM1P19320 739 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 HAND2P61296 217 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 IRX3P78415 501 aaPredicted RBP14□□□□□ -0.17
HSPG2-206ENST00000439717 USP17L24Q0WX57 530 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 ZYXQ15942 572 aaKnown RBP14□□□□□ -0.17
HSPG2-206ENST00000439717 AKNAD1Q5T1N1 836 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 MFSD6Q6ZSS7 791 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 SMCR8Q8TEV9 937 aaPredicted RBP14□□□□□ -0.17
HSPG2-206ENST00000439717 ERO1AQ96HE7 468 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 ESYT1Q9BSJ8 1104 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 ASCC2Q9H1I8 757 aaPredicted RBP14□□□□□ -0.17
HSPG2-206ENST00000439717 VCPKMTQ9H867 229 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 MTMR4Q9NYA4 1195 aa14□□□□□ -0.17
HSPG2-206ENST00000439717 CDC45O75419 566 aa13.99□□□□□ -0.17
HSPG2-206ENST00000439717 TTLL1O95922 423 aa13.99□□□□□ -0.17
HSPG2-206ENST00000439717 GCLCP48506 637 aaPredicted RBP13.99□□□□□ -0.17
HSPG2-206ENST00000439717 ATP2B2Q01814 1243 aa13.99□□□□□ -0.17
HSPG2-206ENST00000439717 ARHGEF6Q15052 776 aa13.99□□□□□ -0.17
HSPG2-206ENST00000439717 FAM47AQ5JRC9 791 aa13.99□□□□□ -0.17
HSPG2-206ENST00000439717 KIAA1211Q6ZU35 1233 aa13.99□□□□□ -0.17
HSPG2-206ENST00000439717 CLEC10AQ8IUN9 316 aa13.99□□□□□ -0.17
HSPG2-206ENST00000439717 GTF3C2Q8WUA4 911 aaPredicted RBP13.99□□□□□ -0.17
HSPG2-206ENST00000439717 MKL1Q969V6 931 aa13.99□□□□□ -0.17
HSPG2-206ENST00000439717 CEP95Q96GE4 821 aa13.99□□□□□ -0.17
HSPG2-206ENST00000439717 NBPF3Q9H094 633 aa13.99□□□□□ -0.17
HSPG2-206ENST00000439717 GOPCQ9HD26 462 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms