RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 CMA1P23946 247 aa10.9□□□□□ -0.67
CUX1-206ENST00000437600 PDE6BP35913 854 aa10.9□□□□□ -0.67
CUX1-206ENST00000437600 TERF1P54274 439 aa10.9□□□□□ -0.67
CUX1-206ENST00000437600 ALX1Q15699 326 aa10.9□□□□□ -0.67
CUX1-206ENST00000437600 SGMS1Q86VZ5 419 aa10.9□□□□□ -0.67
CUX1-206ENST00000437600 CRACR2BQ8N4Y2 399 aaPredicted RBP10.9□□□□□ -0.67
CUX1-206ENST00000437600 DPF2Q92785 391 aa10.9□□□□□ -0.67
CUX1-206ENST00000437600 MXD3Q9BW11 206 aa10.9□□□□□ -0.67
CUX1-206ENST00000437600 SPTLC3Q9NUV7 552 aa10.9□□□□□ -0.67
CUX1-206ENST00000437600 PCDHA5Q9Y5H7 936 aa10.9□□□□□ -0.67
CUX1-206ENST00000437600 POLR2DO15514 142 aaKnown RBP10.89□□□□□ -0.67
CUX1-206ENST00000437600 CDKL5O76039 1030 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 QSER1Q2KHR3 1735 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 CTR9Q6PD62 1173 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 NBPF11Q86T75 865 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 ENAHQ8N8S7 591 aaPredicted RBP10.89□□□□□ -0.67
CUX1-206ENST00000437600 KRT23Q9C075 422 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 MCM9Q9NXL9 1143 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.89□□□□□ -0.677e-6■□□□□ 9.2
CUX1-206ENST00000437600 V9GYY5 206 aaPredicted RBP10.89□□□□□ -0.67
CUX1-206ENST00000437600 A0A1W2PQ27 194 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 A0A1W2PQ64 194 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 A0A1W2PQD8 194 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 KLRG2A4D1S0 409 aaPredicted RBP10.89□□□□□ -0.67
CUX1-206ENST00000437600 C21orf2O43822 256 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 LDHBP07195 334 aaKnown RBP10.89□□□□□ -0.67
CUX1-206ENST00000437600 TNNT1P13805 278 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 NPR1P16066 1061 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 DPEP1P16444 411 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 CDC25AP30304 524 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 LIFRP42702 1097 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 ATL3Q6DD88 541 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 TMC6Q7Z403 805 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 NOSTRINQ8IVI9 506 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 CNNM3Q8NE01 707 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 MASTLQ96GX5 879 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 DCP1AQ9NPI6 582 aaPredicted RBP10.89□□□□□ -0.67
CUX1-206ENST00000437600 SAP30BPQ9UHR5 308 aaKnown RBP10.89□□□□□ -0.67
CUX1-206ENST00000437600 GGA1Q9UJY5 639 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 KCNH3Q9ULD8 1083 aa10.89□□□□□ -0.67
CUX1-206ENST00000437600 BMP6P22004 513 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 PDE4BQ07343 736 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 SART3Q15020 963 aaKnown RBP10.88□□□□□ -0.67
CUX1-206ENST00000437600 TRMT44Q8IYL2 757 aaKnown RBP10.88□□□□□ -0.67
CUX1-206ENST00000437600 MYRIPQ8NFW9 859 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 SH3RF3Q8TEJ3 882 aaPredicted RBP10.88□□□□□ -0.67
CUX1-206ENST00000437600 STAG1Q8WVM7 1258 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 DYNLL2Q96FJ2 89 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 EPSTI1Q96J88 318 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 CD209Q9NNX6 404 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 PCNTO95613 3336 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 DOCK2Q92608 1830 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 FMNL1O95466 1100 aaPredicted RBP10.88□□□□□ -0.67
CUX1-206ENST00000437600 PRR29P0C7W0 189 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 U2AF2P26368 475 aaKnown RBP eCLIP10.88□□□□□ -0.671e-7■■■■■ 27.9
CUX1-206ENST00000437600 HMGB2P26583 209 aaKnown RBP10.88□□□□□ -0.67
CUX1-206ENST00000437600 HOXA10P31260 410 aaPredicted RBP10.88□□□□□ -0.67
CUX1-206ENST00000437600 AFMP43652 599 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 DOK7Q18PE1 504 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 METTL16Q86W50 562 aaKnown RBP10.88□□□□□ -0.67
CUX1-206ENST00000437600 SMAP1Q8IYB5 467 aaPredicted RBP10.88□□□□□ -0.67
CUX1-206ENST00000437600 TRIM22Q8IYM9 498 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 ZNF710Q8N1W2 664 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 SLC44A5Q8NCS7 719 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 IRS2Q9Y4H2 1338 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 MYH2Q9UKX2 1941 aa10.88□□□□□ -0.67
CUX1-206ENST00000437600 MMP1P03956 469 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 IFNAR1P17181 557 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 ZNF174Q15697 407 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 MAPKAPK5Q8IW41 473 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 TBC1D16Q8TBP0 767 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 TGFBRAP1Q8WUH2 860 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 CPVLQ9H3G5 476 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 CNNM2Q9H8M5 875 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 KCNQ5Q9NR82 932 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 FANCLQ9NW38 375 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 SERTAD1Q9UHV2 236 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 USP5P45974 858 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 GTF2IP78347 998 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 NCAPHQ15003 741 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 MFSD14BQ5SR56 506 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 IFIT1BQ5T764 474 aaKnown RBP10.87□□□□□ -0.67
CUX1-206ENST00000437600 RASGRP2Q7LDG7 609 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 ZNF804AQ7Z570 1209 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 CRAMP1Q96RY5 1269 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 NAT10Q9H0A0 1025 aaKnown RBP10.87□□□□□ -0.67
CUX1-206ENST00000437600 LEMD3Q9Y2U8 911 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 TMEM232C9JQI7 657 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 SAFBQ15424 915 aaKnown RBP eCLIP10.87□□□□□ -0.67
CUX1-206ENST00000437600 CREBRFQ8IUR6 639 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 ESR2Q92731 530 aa10.87□□□□□ -0.67
CUX1-206ENST00000437600 ZSCAN10Q96SZ4 725 aaPredicted RBP10.87□□□□□ -0.67
CUX1-206ENST00000437600 CRNKL1Q9BZJ0 848 aaKnown RBP10.87□□□□□ -0.67
CUX1-206ENST00000437600 BBOX1O75936 387 aa10.86□□□□□ -0.67
CUX1-206ENST00000437600 SMYD4Q8IYR2 804 aaPredicted RBP10.86□□□□□ -0.67
CUX1-206ENST00000437600 MTFR1LQ9H019 292 aa10.86□□□□□ -0.67
CUX1-206ENST00000437600 HSD3B7Q9H2F3 369 aa10.86□□□□□ -0.67
CUX1-206ENST00000437600 TMX1Q9H3N1 280 aa10.86□□□□□ -0.67
CUX1-206ENST00000437600 DBNDD1Q9H9R9 158 aa10.86□□□□□ -0.67
CUX1-206ENST00000437600 ATP6V0A2Q9Y487 856 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms