RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 VEGFAP15692 232 aaPredicted RBP26.93■■□□□ 1.9
CPSF4-204ENST00000436336 ST3GAL1Q11201 340 aa26.93■■□□□ 1.9
CPSF4-204ENST00000436336 SCRN1Q12765 414 aa26.93■■□□□ 1.9
CPSF4-204ENST00000436336 ZNF654Q8IZM8 581 aa26.93■■□□□ 1.9
CPSF4-204ENST00000436336 CABP5Q9NP86 173 aa26.93■■□□□ 1.9
CPSF4-204ENST00000436336 MTMR4Q9NYA4 1195 aa26.93■■□□□ 1.9
CPSF4-204ENST00000436336 STX8Q9UNK0 236 aa26.93■■□□□ 1.9
CPSF4-204ENST00000436336 HPS5Q9UPZ3 1129 aa26.93■■□□□ 1.9
CPSF4-204ENST00000436336 GDF11O95390 407 aa26.93■■□□□ 1.9
CPSF4-204ENST00000436336 RRP1BQ14684 758 aaKnown RBP26.93■■□□□ 1.9
CPSF4-204ENST00000436336 SUPT20HL1Q3ZLR7 823 aa26.93■■□□□ 1.9
CPSF4-204ENST00000436336 KAT14Q9H8E8 782 aa26.93■■□□□ 1.9
CPSF4-204ENST00000436336 RRAGCQ9HB90 399 aa26.93■■□□□ 1.9
CPSF4-204ENST00000436336 ZSCAN21Q9Y5A6 473 aaPredicted RBP26.93■■□□□ 1.9
CPSF4-204ENST00000436336 NID2Q14112 1375 aa26.92■■□□□ 1.9
CPSF4-204ENST00000436336 DOCK1Q14185 1865 aa26.92■■□□□ 1.9
CPSF4-204ENST00000436336 KRT26Q7Z3Y9 468 aa26.92■■□□□ 1.9
CPSF4-204ENST00000436336 CATIPQ7Z7H3 387 aa26.92■■□□□ 1.9
CPSF4-204ENST00000436336 METAP2P50579 478 aaKnown RBP eCLIP26.91■■□□□ 1.9
CPSF4-204ENST00000436336 CCT2P78371 535 aaKnown RBP26.91■■□□□ 1.9
CPSF4-204ENST00000436336 PRAMEF18Q5VWM3 479 aa26.91■■□□□ 1.9
CPSF4-204ENST00000436336 MICU3Q86XE3 530 aa26.91■■□□□ 1.9
CPSF4-204ENST00000436336 FOXD4L1Q9NU39 408 aa26.91■■□□□ 1.9
CPSF4-204ENST00000436336 ADM5C9JUS6 153 aa26.9■■□□□ 1.9
CPSF4-204ENST00000436336 DDAH1O94760 285 aa26.9■■□□□ 1.9
CPSF4-204ENST00000436336 TTLL1O95922 423 aa26.9■■□□□ 1.9
CPSF4-204ENST00000436336 CALM1P0DP23 149 aa26.9■■□□□ 1.9
CPSF4-204ENST00000436336 CALM2P0DP24 149 aa26.9■■□□□ 1.9
CPSF4-204ENST00000436336 CALM3P0DP25 149 aa26.9■■□□□ 1.9
CPSF4-204ENST00000436336 TMEM47Q9BQJ4 181 aa26.9■■□□□ 1.9
CPSF4-204ENST00000436336 ZNF341Q9BYN7 854 aa26.9■■□□□ 1.9
CPSF4-204ENST00000436336 KANSL2Q9H9L4 492 aa26.9■■□□□ 1.9
CPSF4-204ENST00000436336 SSC5DA1L4H1 1573 aa26.9■■□□□ 1.9
CPSF4-204ENST00000436336 PHF20L1A8MW92 1017 aa26.9■■□□□ 1.9
CPSF4-204ENST00000436336 GH2P01242 217 aa26.9■■□□□ 1.9
CPSF4-204ENST00000436336 TOP1P11387 765 aaKnown RBP26.9■■□□□ 1.9
CPSF4-204ENST00000436336 CAP2P40123 477 aa26.9■■□□□ 1.9
CPSF4-204ENST00000436336 MYL10Q9BUA6 226 aa26.9■■□□□ 1.9
CPSF4-204ENST00000436336 GOLGA8AA7E2F4 631 aa26.89■■□□□ 1.9
CPSF4-204ENST00000436336 DHX16O60231 1041 aaKnown RBP26.89■■□□□ 1.9
CPSF4-204ENST00000436336 TROAPQ12815 778 aa26.89■■□□□ 1.9
CPSF4-204ENST00000436336 SHROOM1Q2M3G4 852 aaPredicted RBP26.89■■□□□ 1.9
CPSF4-204ENST00000436336 RAB11FIP4Q86YS3 637 aa26.89■■□□□ 1.9
CPSF4-204ENST00000436336 PNMA1Q8ND90 353 aa26.89■■□□□ 1.9
CPSF4-204ENST00000436336 RXRAP19793 462 aa26.88■■□□□ 1.89
CPSF4-204ENST00000436336 GUCY1A2P33402 732 aa26.88■■□□□ 1.89
CPSF4-204ENST00000436336 SEPT2Q15019 361 aa26.88■■□□□ 1.89
CPSF4-204ENST00000436336 PPP2R5BQ15173 497 aa26.88■■□□□ 1.89
CPSF4-204ENST00000436336 ZBTB21Q9ULJ3 1066 aa26.88■■□□□ 1.89
CPSF4-204ENST00000436336 CLEC11AQ9Y240 323 aa26.88■■□□□ 1.89
CPSF4-204ENST00000436336 JAG1P78504 1218 aa26.87■■□□□ 1.89
CPSF4-204ENST00000436336 CDC37L1Q7L3B6 337 aa26.87■■□□□ 1.89
CPSF4-204ENST00000436336 USP48Q86UV5 1035 aa26.87■■□□□ 1.89
CPSF4-204ENST00000436336 NUP133Q8WUM0 1156 aa26.87■■□□□ 1.89
CPSF4-204ENST00000436336 LLPHQ9BRT6 129 aaKnown RBP26.87■■□□□ 1.89
CPSF4-204ENST00000436336 NCOA5Q9HCD5 579 aaKnown RBP26.87■■□□□ 1.89
CPSF4-204ENST00000436336 GINM1Q9NU53 330 aa26.87■■□□□ 1.89
CPSF4-204ENST00000436336 NYAP2Q9P242 653 aa26.87■■□□□ 1.89
CPSF4-204ENST00000436336 CLEC10AQ8IUN9 316 aa26.87■■□□□ 1.89
CPSF4-204ENST00000436336 FANCBQ8NB91 859 aa26.87■■□□□ 1.89
CPSF4-204ENST00000436336 CWC22Q9HCG8 908 aaKnown RBP26.87■■□□□ 1.89
CPSF4-204ENST00000436336 CLIP2Q9UDT6 1046 aa26.87■■□□□ 1.89
CPSF4-204ENST00000436336 ZNF112Q9UJU3 913 aa26.87■■□□□ 1.89
CPSF4-204ENST00000436336 CTNND1O60716 968 aaKnown RBP26.86■■□□□ 1.89
CPSF4-204ENST00000436336 ASNSP08243 561 aa26.86■■□□□ 1.89
CPSF4-204ENST00000436336 ICA1Q05084 483 aa26.86■■□□□ 1.89
CPSF4-204ENST00000436336 RAB3GAP1Q15042 981 aa26.86■■□□□ 1.89
CPSF4-204ENST00000436336 RTN1Q16799 776 aa26.86■■□□□ 1.89
CPSF4-204ENST00000436336 MAP3K14Q99558 947 aa26.86■■□□□ 1.89
CPSF4-204ENST00000436336 PAPPA2Q9BXP8 1791 aa26.85■■□□□ 1.89
CPSF4-204ENST00000436336 CCDC196A0A1B0GTZ2 297 aa26.85■■□□□ 1.89
CPSF4-204ENST00000436336 CCDC144CPQ8IYA2 1237 aa26.85■■□□□ 1.89
CPSF4-204ENST00000436336 MKL1Q969V6 931 aa26.85■■□□□ 1.89
CPSF4-204ENST00000436336 SMC3Q9UQE7 1217 aa26.85■■□□□ 1.89
CPSF4-204ENST00000436336 MYH6P13533 1939 aa26.85■■□□□ 1.89
CPSF4-204ENST00000436336 POTEIP0CG38 1075 aa26.85■■□□□ 1.89
CPSF4-204ENST00000436336 POTEJP0CG39 1038 aa26.85■■□□□ 1.89
CPSF4-204ENST00000436336 EEF2P13639 858 aaKnown RBP26.85■■□□□ 1.89
CPSF4-204ENST00000436336 CDC27P30260 824 aa26.85■■□□□ 1.89
CPSF4-204ENST00000436336 CDCA5Q96FF9 252 aa26.85■■□□□ 1.89
CPSF4-204ENST00000436336 NMRK2Q9NPI5 230 aa26.85■■□□□ 1.89
CPSF4-204ENST00000436336 FAM217BQ9NTX9 383 aaPredicted RBP26.85■■□□□ 1.89
CPSF4-204ENST00000436336 CPLX1O14810 134 aa26.84■■□□□ 1.89
CPSF4-204ENST00000436336 CPLX2Q6PUV4 134 aaKnown RBP26.84■■□□□ 1.89
CPSF4-204ENST00000436336 CTCFLQ8NI51 663 aaPredicted RBP26.84■■□□□ 1.89
CPSF4-204ENST00000436336 GLIS2Q9BZE0 524 aaPredicted RBP26.84■■□□□ 1.89
CPSF4-204ENST00000436336 RBM28Q9NW13 759 aaKnown RBP26.84■■□□□ 1.89
CPSF4-204ENST00000436336 OTOFQ9HC10 1997 aa26.84■■□□□ 1.89
CPSF4-204ENST00000436336 CTDNEP1O95476 244 aa26.83■■□□□ 1.89
CPSF4-204ENST00000436336 NF2P35240 595 aa26.83■■□□□ 1.89
CPSF4-204ENST00000436336 ADD1P35611 737 aaKnown RBP26.83■■□□□ 1.89
CPSF4-204ENST00000436336 ATP2B2Q01814 1243 aa26.83■■□□□ 1.89
CPSF4-204ENST00000436336 DLK2Q6UY11 383 aa26.83■■□□□ 1.89
CPSF4-204ENST00000436336 LDHDQ86WU2 507 aa26.83■■□□□ 1.89
CPSF4-204ENST00000436336 NSUN7Q8NE18 718 aaKnown RBP26.83■■□□□ 1.89
CPSF4-204ENST00000436336 SMARCC2Q8TAQ2 1214 aa26.83■■□□□ 1.89
CPSF4-204ENST00000436336 KLRG1Q96E93 195 aa26.83■■□□□ 1.89
CPSF4-204ENST00000436336 SIAH1Q8IUQ4 282 aa26.82■■□□□ 1.88
CPSF4-204ENST00000436336 LRRC47Q8N1G4 583 aaKnown RBP26.82■■□□□ 1.88
CPSF4-204ENST00000436336 ZNF526Q8TF50 670 aaPredicted RBP26.82■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms