RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 UPK3BL1B0FP48 263 aa5.82□□□□□ -1.48
CLK1-204ENST00000432425 UPK3BL2E5RIL1 263 aa5.82□□□□□ -1.48
CLK1-204ENST00000432425 HTR3BO95264 441 aa5.82□□□□□ -1.48
CLK1-204ENST00000432425 ZNF792Q3KQV3 632 aa5.82□□□□□ -1.48
CLK1-204ENST00000432425 HSPA12BQ96MM6 686 aa5.82□□□□□ -1.48
CLK1-204ENST00000432425 KCNQ5Q9NR82 932 aa5.82□□□□□ -1.48
CLK1-204ENST00000432425 POLR3KQ9Y2Y1 108 aaPredicted RBP5.82□□□□□ -1.48
CLK1-204ENST00000432425 ZNF76P36508 570 aa5.81□□□□□ -1.48
CLK1-204ENST00000432425 ZNF296Q8WUU4 475 aaPredicted RBP5.81□□□□□ -1.48
CLK1-204ENST00000432425 LRRC3Q9BY71 257 aa5.81□□□□□ -1.48
CLK1-204ENST00000432425 RC3H2Q9HBD1 1191 aaKnown RBP5.81□□□□□ -1.48
CLK1-204ENST00000432425 CEP131Q9UPN4 1083 aa5.81□□□□□ -1.48
CLK1-204ENST00000432425 H3BS24 57 aa5.8□□□□□ -1.48
CLK1-204ENST00000432425 TNNI2P48788 182 aa5.8□□□□□ -1.48
CLK1-204ENST00000432425 SLFN12Q8IYM2 578 aa5.8□□□□□ -1.48
CLK1-204ENST00000432425 DNAJB8Q8NHS0 232 aa5.8□□□□□ -1.48
CLK1-204ENST00000432425 ADAMTS1Q9UHI8 967 aa5.8□□□□□ -1.48
CLK1-204ENST00000432425 GREM1O60565 184 aa5.79□□□□□ -1.48
CLK1-204ENST00000432425 CHMP4BP1P59074 171 aa5.79□□□□□ -1.48
CLK1-204ENST00000432425 ZP2Q05996 745 aa5.79□□□□□ -1.48
CLK1-204ENST00000432425 PHACTR4Q8IZ21 702 aa5.79□□□□□ -1.48
CLK1-204ENST00000432425 BACH2Q9BYV9 841 aa5.79□□□□□ -1.48
CLK1-204ENST00000432425 BRMS1Q9HCU9 246 aa5.79□□□□□ -1.48
CLK1-204ENST00000432425 METTL5Q9NRN9 209 aaKnown RBP5.79□□□□□ -1.48
CLK1-204ENST00000432425 SEMA3GQ9NS98 782 aa5.79□□□□□ -1.48
CLK1-204ENST00000432425 CHURC1-FNTBB4DL54 471 aa5.79□□□□□ -1.48
CLK1-204ENST00000432425 BIN1O00499 593 aa5.79□□□□□ -1.48
CLK1-204ENST00000432425 RNASE1P07998 156 aaKnown RBP5.79□□□□□ -1.48
CLK1-204ENST00000432425 JUNBP17275 347 aaPredicted RBP5.79□□□□□ -1.48
CLK1-204ENST00000432425 TNK2Q07912 1038 aa5.79□□□□□ -1.48
CLK1-204ENST00000432425 SLC23A3Q6PIS1 610 aa5.79□□□□□ -1.48
CLK1-204ENST00000432425 THAP5Q7Z6K1 395 aa5.79□□□□□ -1.48
CLK1-204ENST00000432425 PIWIL2Q8TC59 973 aaKnown RBP5.79□□□□□ -1.48
CLK1-204ENST00000432425 CCDC74BQ96LY2 380 aa5.79□□□□□ -1.48
CLK1-204ENST00000432425 MBNL3Q9NUK0 354 aaKnown RBP5.79□□□□□ -1.48
CLK1-204ENST00000432425 PCDHB14Q9Y5E9 798 aa5.79□□□□□ -1.48
CLK1-204ENST00000432425 ST14Q9Y5Y6 855 aa5.79□□□□□ -1.48
CLK1-204ENST00000432425 APOBRQ0VD83 1088 aa5.78□□□□□ -1.48
CLK1-204ENST00000432425 SEZ6Q53EL9 994 aa5.78□□□□□ -1.48
CLK1-204ENST00000432425 LDLRAD1Q5T700 205 aa5.78□□□□□ -1.48
CLK1-204ENST00000432425 USP48Q86UV5 1035 aa5.78□□□□□ -1.48
CLK1-204ENST00000432425 KIAA0825Q8IV33 1275 aa5.78□□□□□ -1.48
CLK1-204ENST00000432425 PPP1R13LQ8WUF5 828 aa5.78□□□□□ -1.48
CLK1-204ENST00000432425 SPON2Q9BUD6 331 aa5.78□□□□□ -1.48
CLK1-204ENST00000432425 ATP13A1Q9HD20 1204 aa5.78□□□□□ -1.48
CLK1-204ENST00000432425 UBP1Q9NZI7 540 aa5.78□□□□□ -1.48
CLK1-204ENST00000432425 LMCD1Q9NZU5 365 aa5.78□□□□□ -1.48
CLK1-204ENST00000432425 ADAMTS6Q9UKP5 1117 aa5.78□□□□□ -1.48
CLK1-204ENST00000432425 KCNH3Q9ULD8 1083 aa5.78□□□□□ -1.48
CLK1-204ENST00000432425 ITGB5P18084 799 aa5.77□□□□□ -1.49
CLK1-204ENST00000432425 MCM4P33991 863 aa5.77□□□□□ -1.49
CLK1-204ENST00000432425 CRKP46108 304 aa5.77□□□□□ -1.49
CLK1-204ENST00000432425 FANCCQ00597 558 aa5.77□□□□□ -1.49
CLK1-204ENST00000432425 LRRN4CLQ8ND94 238 aa5.77□□□□□ -1.49
CLK1-204ENST00000432425 BAHD1Q8TBE0 780 aaPredicted RBP5.77□□□□□ -1.49
CLK1-204ENST00000432425 RNF141Q8WVD5 230 aa5.77□□□□□ -1.49
CLK1-204ENST00000432425 NKD1Q969G9 470 aa5.77□□□□□ -1.49
CLK1-204ENST00000432425 RNF34Q969K3 372 aa5.77□□□□□ -1.49
CLK1-204ENST00000432425 UBE2FQ969M7 185 aa5.77□□□□□ -1.49
CLK1-204ENST00000432425 ASIC4Q96FT7 647 aa5.77□□□□□ -1.49
CLK1-204ENST00000432425 NT5C1AQ9BXI3 368 aa5.77□□□□□ -1.49
CLK1-204ENST00000432425 CARS2Q9HA77 564 aaKnown RBP5.77□□□□□ -1.49
CLK1-204ENST00000432425 PRDM7Q9NQW5 492 aa5.77□□□□□ -1.49
CLK1-204ENST00000432425 ZSWIM5Q9P217 1185 aa5.77□□□□□ -1.49
CLK1-204ENST00000432425 RNF114Q9Y508 228 aa5.77□□□□□ -1.49
CLK1-204ENST00000432425 VAMP1P23763 118 aa5.76□□□□□ -1.49
CLK1-204ENST00000432425 GBP1P32455 592 aa5.76□□□□□ -1.49
CLK1-204ENST00000432425 Q96M66 194 aa5.76□□□□□ -1.49
CLK1-204ENST00000432425 KIF2CQ99661 725 aa5.76□□□□□ -1.49
CLK1-204ENST00000432425 TRIT1Q9H3H1 467 aaKnown RBP5.76□□□□□ -1.49
CLK1-204ENST00000432425 GMIPQ9P107 970 aa5.76□□□□□ -1.49
CLK1-204ENST00000432425 DNAJA2O60884 412 aa5.75□□□□□ -1.49
CLK1-204ENST00000432425 ATE1O95260 518 aa5.75□□□□□ -1.49
CLK1-204ENST00000432425 RAG1P15918 1043 aa5.75□□□□□ -1.49
CLK1-204ENST00000432425 ZNF165P49910 485 aa5.75□□□□□ -1.49
CLK1-204ENST00000432425 ARSHQ5FYA8 562 aa5.75□□□□□ -1.49
CLK1-204ENST00000432425 GK5Q6ZS86 529 aa5.75□□□□□ -1.49
CLK1-204ENST00000432425 ATG4DQ86TL0 474 aaPredicted RBP5.75□□□□□ -1.49
CLK1-204ENST00000432425 KREMEN1Q96MU8 473 aa5.75□□□□□ -1.49
CLK1-204ENST00000432425 ASPNQ9BXN1 380 aa5.75□□□□□ -1.49
CLK1-204ENST00000432425 SLC22A31A6NKX4 558 aa5.75□□□□□ -1.49
CLK1-204ENST00000432425 SCAMP3O14828 347 aaKnown RBP5.75□□□□□ -1.49
CLK1-204ENST00000432425 PAPLNO95428 1278 aa5.75□□□□□ -1.49
CLK1-204ENST00000432425 RECKO95980 971 aa5.75□□□□□ -1.49
CLK1-204ENST00000432425 OVOS1Q6IE37 1185 aa5.75□□□□□ -1.49
CLK1-204ENST00000432425 TMPRSS7Q7RTY8 843 aa5.75□□□□□ -1.49
CLK1-204ENST00000432425 REXO1Q8N1G1 1221 aaKnown RBP5.75□□□□□ -1.49
CLK1-204ENST00000432425 DTWD2Q8NBA8 298 aa5.75□□□□□ -1.49
CLK1-204ENST00000432425 EHMT1Q9H9B1 1298 aa5.75□□□□□ -1.49
CLK1-204ENST00000432425 RGS13O14921 159 aa5.74□□□□□ -1.49
CLK1-204ENST00000432425 TXKP42681 527 aa5.74□□□□□ -1.49
CLK1-204ENST00000432425 CLCQ05315 142 aa5.74□□□□□ -1.49
CLK1-204ENST00000432425 ZNF394Q53GI3 561 aa5.74□□□□□ -1.49
CLK1-204ENST00000432425 SLITRK4Q8IW52 837 aa5.74□□□□□ -1.49
CLK1-204ENST00000432425 EAF1Q96JC9 268 aaPredicted RBP5.74□□□□□ -1.49
CLK1-204ENST00000432425 GPATCH2Q9NW75 528 aa5.74□□□□□ -1.49
CLK1-204ENST00000432425 PCDHGB7Q9Y5F8 929 aa5.74□□□□□ -1.49
CLK1-204ENST00000432425 RBAK-RBAKDNI3L0D1 243 aa5.73□□□□□ -1.49
CLK1-204ENST00000432425 TPP2P29144 1249 aaPredicted RBP5.73□□□□□ -1.49
CLK1-204ENST00000432425 RNF4P78317 190 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 165.7 ms