RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 PRR20CP86479 221 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 PRR20DP86480 221 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 PRR20BP86481 221 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 PRR20AP86496 221 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 TRIM32Q13049 653 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 HDAC1Q13547 482 aaPredicted RBP5.52□□□□□ -1.53
SF3B1-202ENST00000409915 SYCP2LQ5T4T6 812 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 G2E3Q7L622 706 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 AMOTL1Q8IY63 956 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 RASGRP4Q8TDF6 673 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 FBF1Q8TES7 1133 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 HNRNPLLQ8WVV9 542 aaKnown RBP5.52□□□□□ -1.53
SF3B1-202ENST00000409915 APBA2Q99767 749 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 CFHR5Q9BXR6 569 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 DDX21Q9NR30 783 aaKnown RBP eCLIP5.52□□□□□ -1.53
SF3B1-202ENST00000409915 MAP10Q9P2G4 905 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 DBF4Q9UBU7 674 aaPredicted RBP5.52□□□□□ -1.53
SF3B1-202ENST00000409915 NIP7Q9Y221 180 aaKnown RBP eCLIP5.52□□□□□ -1.53
SF3B1-202ENST00000409915 AFDNP55196 1824 aaKnown RBP5.52□□□□□ -1.53
SF3B1-202ENST00000409915 ABCC12Q96J65 1359 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 KIAA1551Q9HCM1 1747 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 ATP10DQ9P241 1426 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 A0A0G2JLW4 131 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 POTECB2RU33 542 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 NPHP1O15259 732 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 F12P00748 615 aaPredicted RBP5.51□□□□□ -1.53
SF3B1-202ENST00000409915 KRT18P05783 430 aaKnown RBP5.51□□□□□ -1.53
SF3B1-202ENST00000409915 DPEP1P16444 411 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 YBX3P16989 372 aaKnown RBP eCLIP5.51□□□□□ -1.53
SF3B1-202ENST00000409915 MCCP23508 829 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 EIF4BP23588 611 aaKnown RBP5.51□□□□□ -1.53
SF3B1-202ENST00000409915 CHRNA5P30532 468 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 NOS2P35228 1153 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 ETFBP38117 255 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 RPIAP49247 311 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 CDKN1CP49918 316 aaPredicted RBP5.51□□□□□ -1.53
SF3B1-202ENST00000409915 EXOSC10Q01780 885 aaKnown RBP5.51□□□□□ -1.53
SF3B1-202ENST00000409915 SLFN5Q08AF3 891 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 RAB33AQ14088 237 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 BRD3Q15059 726 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 ZRSR2Q15696 482 aaKnown RBP5.51□□□□□ -1.53
SF3B1-202ENST00000409915 BRDTQ58F21 947 aaPredicted RBP5.51□□□□□ -1.53
SF3B1-202ENST00000409915 RNF20Q5VTR2 975 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 PRR5LQ6MZQ0 368 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 PPP4R4Q6NUP7 873 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 FAM43BQ6ZT52 329 aaPredicted RBP5.51□□□□□ -1.53
SF3B1-202ENST00000409915 NBPF5PQ86XG9 351 aaPredicted RBP5.51□□□□□ -1.53
SF3B1-202ENST00000409915 CYP4X1Q8N118 509 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 CNBD1Q8NA66 436 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 SEC16BQ96JE7 1060 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 OCSTAMPQ9BR26 566 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 CHMP4BQ9H444 224 aaKnown RBP5.51□□□□□ -1.53
SF3B1-202ENST00000409915 CNTN3Q9P232 1028 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 SWAP70Q9UH65 585 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 ZNF652Q9Y2D9 606 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 GPSM3Q9Y4H4 160 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 MRVI1Q9Y6F6 885 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 N4BP2Q86UW6 1770 aaPredicted RBP5.51□□□□□ -1.53
SF3B1-202ENST00000409915 NRXN2Q9P2S2 1712 aa5.51□□□□□ -1.53
SF3B1-202ENST00000409915 TNRC6CQ9HCJ0 1690 aaKnown RBP5.5□□□□□ -1.53
SF3B1-202ENST00000409915 ERVV-1B6SEH8 477 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 M0R2N6 131 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 IFRD1O00458 451 aaPredicted RBP5.5□□□□□ -1.53
SF3B1-202ENST00000409915 KLF4O43474 513 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 VAMP4O75379 141 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 LIG1P18858 919 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 CD53P19397 219 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 IGFBP4P22692 258 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 PDE6BP35913 854 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 USP5P45974 858 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 NASPP49321 788 aaPredicted RBP5.5□□□□□ -1.53
SF3B1-202ENST00000409915 RGS3P49796 1198 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 CCDC30Q5VVM6 783 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 C16orf46Q6P387 395 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 SLC51AQ86UW1 340 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 LILRB2Q8N423 598 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 SAMD3Q8N6K7 520 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 TRPM4Q8TD43 1214 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 SLC39A13Q96H72 371 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 ZNF512BQ96KM6 892 aaPredicted RBP5.5□□□□□ -1.53
SF3B1-202ENST00000409915 ARPC5LQ9BPX5 153 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 NUDT12Q9BQG2 462 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 STK31Q9BXU1 1019 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 SAP130Q9H0E3 1048 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 JADE2Q9NQC1 790 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 RRAGDQ9NQL2 400 aaPredicted RBP5.5□□□□□ -1.53
SF3B1-202ENST00000409915 TMEM51Q9NW97 253 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 HYPKQ9NX55 129 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 DACH1Q9UI36 760 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 CD2APQ9Y5K6 639 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 COL11A2P13942 1736 aaPredicted RBP5.5□□□□□ -1.53
SF3B1-202ENST00000409915 ADCY9O60503 1353 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 NUP98P52948 1817 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 KIF13BQ9NQT8 1826 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 ARFGEF2Q9Y6D5 1785 aa5.5□□□□□ -1.53
SF3B1-202ENST00000409915 ANKRD31Q8N7Z5 1873 aa5.49□□□□□ -1.53
SF3B1-202ENST00000409915 TTC24A2A3L6 582 aaPredicted RBP5.49□□□□□ -1.53
SF3B1-202ENST00000409915 ESPNB1AK53 854 aa5.49□□□□□ -1.53
SF3B1-202ENST00000409915 TSPAN6O43657 245 aa5.49□□□□□ -1.53
SF3B1-202ENST00000409915 ZNF500O60304 480 aaPredicted RBP5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms