RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 CACNB2Q08289 660 aaPredicted RBP34.6■■■■□ 3.13
HMGB1-205ENST00000399494 PLEKHH3Q7Z736 793 aa34.6■■■■□ 3.13
HMGB1-205ENST00000399494 AACSQ86V21 672 aa34.6■■■■□ 3.13
HMGB1-205ENST00000399494 ERC1Q8IUD2 1116 aa34.6■■■■□ 3.13
HMGB1-205ENST00000399494 CCAR1Q8IX12 1150 aaKnown RBP34.6■■■■□ 3.13
HMGB1-205ENST00000399494 USP17L15C9J2P7 530 aa34.59■■■■□ 3.13
HMGB1-205ENST00000399494 USP17L13C9JLJ4 530 aa34.59■■■■□ 3.13
HMGB1-205ENST00000399494 USP17L11C9JVI0 530 aa34.59■■■■□ 3.13
HMGB1-205ENST00000399494 USP17L18D6R9N7 530 aa34.59■■■■□ 3.13
HMGB1-205ENST00000399494 USP17L22D6RA61 530 aa34.59■■■■□ 3.13
HMGB1-205ENST00000399494 USP17L17D6RBQ6 530 aa34.59■■■■□ 3.13
HMGB1-205ENST00000399494 USP17L19D6RCP7 530 aa34.59■■■■□ 3.13
HMGB1-205ENST00000399494 USP17L20D6RJB6 530 aa34.59■■■■□ 3.13
HMGB1-205ENST00000399494 USP17L24Q0WX57 530 aa34.59■■■■□ 3.13
HMGB1-205ENST00000399494 ZYXQ15942 572 aaKnown RBP34.59■■■■□ 3.13
HMGB1-205ENST00000399494 CERKLQ49MI3 558 aaPredicted RBP34.59■■■■□ 3.13
HMGB1-205ENST00000399494 C7orf61Q8IZ16 206 aa34.59■■■■□ 3.13
HMGB1-205ENST00000399494 RIOK1Q9BRS2 568 aaKnown RBP34.59■■■■□ 3.13
HMGB1-205ENST00000399494 C11orf49Q9H6J7 331 aa34.59■■■■□ 3.13
HMGB1-205ENST00000399494 RABGAP1Q9Y3P9 1069 aa34.59■■■■□ 3.13
HMGB1-205ENST00000399494 CNMDO75829 334 aa34.58■■■■□ 3.13
HMGB1-205ENST00000399494 GDF15Q99988 308 aa34.58■■■■□ 3.13
HMGB1-205ENST00000399494 ZKSCAN1P17029 563 aaPredicted RBP34.57■■■■□ 3.12
HMGB1-205ENST00000399494 RGS2P41220 211 aa34.57■■■■□ 3.12
HMGB1-205ENST00000399494 PLCD1P51178 756 aa34.57■■■■□ 3.12
HMGB1-205ENST00000399494 RAB3GAP1Q15042 981 aa34.57■■■■□ 3.12
HMGB1-205ENST00000399494 CCL14Q16627 93 aa34.57■■■■□ 3.12
HMGB1-205ENST00000399494 ABCB5Q2M3G0 1257 aa34.57■■■■□ 3.12
HMGB1-205ENST00000399494 CATSPERGQ6ZRH7 1159 aa34.57■■■■□ 3.12
HMGB1-205ENST00000399494 KIAA1683Q9H0B3 1180 aa34.57■■■■□ 3.12
HMGB1-205ENST00000399494 SOX1O00570 391 aaPredicted RBP34.56■■■■□ 3.12
HMGB1-205ENST00000399494 BMP8BP34820 402 aa34.56■■■■□ 3.12
HMGB1-205ENST00000399494 USP14P54578 494 aa34.56■■■■□ 3.12
HMGB1-205ENST00000399494 ACER1Q8TDN7 264 aa34.56■■■■□ 3.12
HMGB1-205ENST00000399494 FEZ1Q99689 392 aa34.56■■■■□ 3.12
HMGB1-205ENST00000399494 SHMT1P34896 483 aa34.55■■■■□ 3.12
HMGB1-205ENST00000399494 ZMYND8Q9ULU4 1186 aaPredicted RBP34.55■■■■□ 3.12
HMGB1-205ENST00000399494 LHX8Q68G74 356 aa34.54■■■■□ 3.12
HMGB1-205ENST00000399494 RHPN1Q8TCX5 695 aa34.54■■■■□ 3.12
HMGB1-205ENST00000399494 IL1RAPL2Q9NP60 686 aa34.54■■■■□ 3.12
HMGB1-205ENST00000399494 CABP5Q9NP86 173 aa34.54■■■■□ 3.12
HMGB1-205ENST00000399494 DDX60LQ5H9U9 1706 aaKnown RBP34.54■■■■□ 3.12
HMGB1-205ENST00000399494 CCND3P30281 292 aaPredicted RBP34.53■■■■□ 3.12
HMGB1-205ENST00000399494 HSP90AB4PQ58FF6 505 aa34.53■■■■□ 3.12
HMGB1-205ENST00000399494 APBA2Q99767 749 aa34.53■■■■□ 3.12
HMGB1-205ENST00000399494 MAGEB6P1A0A0J9YX57 407 aa34.52■■■■□ 3.12
HMGB1-205ENST00000399494 VCAM1P19320 739 aa34.52■■■■□ 3.12
HMGB1-205ENST00000399494 GUCY1A2P33402 732 aa34.52■■■■□ 3.12
HMGB1-205ENST00000399494 CCNA1P78396 465 aa34.52■■■■□ 3.12
HMGB1-205ENST00000399494 MAP2K5Q13163 448 aa34.52■■■■□ 3.12
HMGB1-205ENST00000399494 TTF1Q15361 905 aaPredicted RBP34.52■■■■□ 3.12
HMGB1-205ENST00000399494 LBX2Q6XYB7 198 aa34.52■■■■□ 3.12
HMGB1-205ENST00000399494 EDC3Q96F86 508 aaKnown RBP34.52■■■■□ 3.12
HMGB1-205ENST00000399494 PFASO15067 1338 aa34.52■■■■□ 3.12
HMGB1-205ENST00000399494 POLR3DP05423 398 aaPredicted RBP34.51■■■■□ 3.12
HMGB1-205ENST00000399494 COL6A1P12109 1028 aa34.51■■■■□ 3.12
HMGB1-205ENST00000399494 GABPAQ06546 454 aa34.51■■■■□ 3.12
HMGB1-205ENST00000399494 SIRT2Q8IXJ6 389 aa34.51■■■■□ 3.12
HMGB1-205ENST00000399494 LRCH3Q96II8 777 aa34.51■■■■□ 3.12
HMGB1-205ENST00000399494 SYN1P17600 705 aa34.5■■■■□ 3.11
HMGB1-205ENST00000399494 SLC9C2Q5TAH2 1124 aa34.5■■■■□ 3.11
HMGB1-205ENST00000399494 CWC22Q9HCG8 908 aaKnown RBP34.5■■■■□ 3.11
HMGB1-205ENST00000399494 BTBD7Q9P203 1132 aa34.5■■■■□ 3.11
HMGB1-205ENST00000399494 GLRX3O76003 335 aaKnown RBP34.49■■■■□ 3.11
HMGB1-205ENST00000399494 PDE6AP16499 860 aa34.49■■■■□ 3.11
HMGB1-205ENST00000399494 SLC15A5A6NIM6 579 aa34.48■■■■□ 3.11
HMGB1-205ENST00000399494 PTPREP23469 700 aa34.48■■■■□ 3.11
HMGB1-205ENST00000399494 EVX2Q03828 476 aa34.48■■■■□ 3.11
HMGB1-205ENST00000399494 SEPT2Q15019 361 aa34.48■■■■□ 3.11
HMGB1-205ENST00000399494 CRBNQ96SW2 442 aa34.48■■■■□ 3.11
HMGB1-205ENST00000399494 CRNKL1Q9BZJ0 848 aaKnown RBP34.48■■■■□ 3.11
HMGB1-205ENST00000399494 FLRT1Q9NZU1 646 aa34.48■■■■□ 3.11
HMGB1-205ENST00000399494 PPIL4Q8WUA2 492 aaKnown RBP eCLIP34.47■■■■□ 3.11
HMGB1-205ENST00000399494 RPAP3Q9H6T3 665 aaPredicted RBP34.47■■■■□ 3.11
HMGB1-205ENST00000399494 SPDYE16A6NNV3 312 aaPredicted RBP34.46■■■■□ 3.11
HMGB1-205ENST00000399494 APBB1O00213 710 aa34.46■■■■□ 3.11
HMGB1-205ENST00000399494 MCM9Q9NXL9 1143 aa34.46■■■■□ 3.11
HMGB1-205ENST00000399494 ZNF532Q9HCE3 1301 aa34.46■■■■□ 3.11
HMGB1-205ENST00000399494 TCRBV5S4A2TA0A5A2 114 aa34.45■■■■□ 3.11
HMGB1-205ENST00000399494 WDR78Q5VTH9 848 aa34.45■■■■□ 3.11
HMGB1-205ENST00000399494 CLASRPQ8N2M8 674 aaKnown RBP34.45■■■■□ 3.11
HMGB1-205ENST00000399494 KIF1BPQ96EK5 621 aa34.45■■■■□ 3.11
HMGB1-205ENST00000399494 A0A1W2PRG0 241 aa34.44■■■■□ 3.1
HMGB1-205ENST00000399494 HOXC6P09630 235 aa34.44■■■■□ 3.1
HMGB1-205ENST00000399494 MAGEA10P43363 369 aaPredicted RBP34.44■■■■□ 3.1
HMGB1-205ENST00000399494 MFSD14CQ5VZR4 134 aa34.44■■■■□ 3.1
HMGB1-205ENST00000399494 LAMA3Q16787 3333 aa34.44■■■■□ 3.1
HMGB1-205ENST00000399494 GOLIM4O00461 696 aa34.43■■■■□ 3.1
HMGB1-205ENST00000399494 DCP1AQ9NPI6 582 aaPredicted RBP34.43■■■■□ 3.1
HMGB1-205ENST00000399494 SUPT16HQ9Y5B9 1047 aaKnown RBP34.43■■■■□ 3.1
HMGB1-205ENST00000399494 GRB14Q14449 540 aa34.42■■■■□ 3.1
HMGB1-205ENST00000399494 LRRC26Q2I0M4 334 aa34.42■■■■□ 3.1
HMGB1-205ENST00000399494 SDR42E1Q8WUS8 393 aa34.42■■■■□ 3.1
HMGB1-205ENST00000399494 DNAJC2Q99543 621 aaKnown RBP34.42■■■■□ 3.1
HMGB1-205ENST00000399494 IVNS1ABPQ9Y6Y0 642 aa34.42■■■■□ 3.1
HMGB1-205ENST00000399494 MPHOSPH10O00566 681 aaKnown RBP34.41■■■■□ 3.1
HMGB1-205ENST00000399494 RAB11FIP3O75154 756 aa34.41■■■■□ 3.1
HMGB1-205ENST00000399494 COG2Q14746 738 aa34.41■■■■□ 3.1
HMGB1-205ENST00000399494 LCORLQ8N3X6 602 aa34.41■■■■□ 3.1
HMGB1-205ENST00000399494 NPLOC4Q8TAT6 608 aa34.41■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms