RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 PLEKHH3Q7Z736 793 aa16.81■□□□□ 0.28
CXCL12-202ENST00000374426 CCAR1Q8IX12 1150 aaKnown RBP16.81■□□□□ 0.28
CXCL12-202ENST00000374426 TRMT44Q8IYL2 757 aaKnown RBP16.81■□□□□ 0.28
CXCL12-202ENST00000374426 FEZ1Q99689 392 aa16.81■□□□□ 0.28
CXCL12-202ENST00000374426 SYN1P17600 705 aa16.8■□□□□ 0.28
CXCL12-202ENST00000374426 CCND3P30281 292 aaPredicted RBP16.8■□□□□ 0.28
CXCL12-202ENST00000374426 MAP3K12Q12852 859 aa16.8■□□□□ 0.28
CXCL12-202ENST00000374426 LHX8Q68G74 356 aa16.8■□□□□ 0.28
CXCL12-202ENST00000374426 ACER1Q8TDN7 264 aa16.8■□□□□ 0.28
CXCL12-202ENST00000374426 APBA2Q99767 749 aa16.8■□□□□ 0.28
CXCL12-202ENST00000374426 KIAA1683Q9H0B3 1180 aa16.8■□□□□ 0.28
CXCL12-202ENST00000374426 RABGAP1Q9Y3P9 1069 aa16.8■□□□□ 0.28
CXCL12-202ENST00000374426 USP17L15C9J2P7 530 aa16.79■□□□□ 0.28
CXCL12-202ENST00000374426 USP17L13C9JLJ4 530 aa16.79■□□□□ 0.28
CXCL12-202ENST00000374426 USP17L11C9JVI0 530 aa16.79■□□□□ 0.28
CXCL12-202ENST00000374426 USP17L18D6R9N7 530 aa16.79■□□□□ 0.28
CXCL12-202ENST00000374426 USP17L22D6RA61 530 aa16.79■□□□□ 0.28
CXCL12-202ENST00000374426 USP17L17D6RBQ6 530 aa16.79■□□□□ 0.28
CXCL12-202ENST00000374426 USP17L19D6RCP7 530 aa16.79■□□□□ 0.28
CXCL12-202ENST00000374426 USP17L20D6RJB6 530 aa16.79■□□□□ 0.28
CXCL12-202ENST00000374426 COL6A1P12109 1028 aa16.79■□□□□ 0.28
CXCL12-202ENST00000374426 VCAM1P19320 739 aa16.79■□□□□ 0.28
CXCL12-202ENST00000374426 USP17L24Q0WX57 530 aa16.79■□□□□ 0.28
CXCL12-202ENST00000374426 RAB3GAP1Q15042 981 aa16.79■□□□□ 0.28
CXCL12-202ENST00000374426 CERKLQ49MI3 558 aaPredicted RBP16.79■□□□□ 0.28
CXCL12-202ENST00000374426 TMED8Q6PL24 325 aaPredicted RBP16.79■□□□□ 0.28
CXCL12-202ENST00000374426 TTC6Q86TZ1 520 aa16.79■□□□□ 0.28
CXCL12-202ENST00000374426 AACSQ86V21 672 aa16.79■□□□□ 0.28
CXCL12-202ENST00000374426 RIOK1Q9BRS2 568 aaKnown RBP16.79■□□□□ 0.28
CXCL12-202ENST00000374426 EXOC6BQ9Y2D4 811 aa16.79■□□□□ 0.28
CXCL12-202ENST00000374426 SHMT1P34896 483 aa16.78■□□□□ 0.28
CXCL12-202ENST00000374426 MAGEA10P43363 369 aaPredicted RBP16.78■□□□□ 0.28
CXCL12-202ENST00000374426 PLCD1P51178 756 aa16.78■□□□□ 0.28
CXCL12-202ENST00000374426 USP14P54578 494 aa16.78■□□□□ 0.28
CXCL12-202ENST00000374426 MAP2K5Q13163 448 aa16.78■□□□□ 0.28
CXCL12-202ENST00000374426 ABCB5Q2M3G0 1257 aa16.78■□□□□ 0.28
CXCL12-202ENST00000374426 CATSPERGQ6ZRH7 1159 aa16.78■□□□□ 0.28
CXCL12-202ENST00000374426 GUCY1A2P33402 732 aa16.77■□□□□ 0.28
CXCL12-202ENST00000374426 CCNA1P78396 465 aa16.77■□□□□ 0.28
CXCL12-202ENST00000374426 HNRNPUQ00839 825 aaKnown RBP eCLIP16.77■□□□□ 0.28
CXCL12-202ENST00000374426 LBX2Q6XYB7 198 aa16.77■□□□□ 0.28
CXCL12-202ENST00000374426 ERC1Q8IUD2 1116 aa16.77■□□□□ 0.28
CXCL12-202ENST00000374426 EDC3Q96F86 508 aaKnown RBP16.77■□□□□ 0.28
CXCL12-202ENST00000374426 CWC22Q9HCG8 908 aaKnown RBP16.77■□□□□ 0.28
CXCL12-202ENST00000374426 FLRT1Q9NZU1 646 aa16.77■□□□□ 0.28
CXCL12-202ENST00000374426 BTBD7Q9P203 1132 aa16.77■□□□□ 0.28
CXCL12-202ENST00000374426 EVX2Q03828 476 aa16.76■□□□□ 0.27
CXCL12-202ENST00000374426 GABPAQ06546 454 aa16.76■□□□□ 0.27
CXCL12-202ENST00000374426 IL1RAPL2Q9NP60 686 aa16.76■□□□□ 0.27
CXCL12-202ENST00000374426 CABP5Q9NP86 173 aa16.76■□□□□ 0.27
CXCL12-202ENST00000374426 MAGEB6P1A0A0J9YX57 407 aa16.75■□□□□ 0.27
CXCL12-202ENST00000374426 SLC15A5A6NIM6 579 aa16.75■□□□□ 0.27
CXCL12-202ENST00000374426 SPDYE16A6NNV3 312 aaPredicted RBP16.75■□□□□ 0.27
CXCL12-202ENST00000374426 GLRX3O76003 335 aaKnown RBP16.75■□□□□ 0.27
CXCL12-202ENST00000374426 PTPREP23469 700 aa16.75■□□□□ 0.27
CXCL12-202ENST00000374426 LRRC26Q2I0M4 334 aa16.75■□□□□ 0.27
CXCL12-202ENST00000374426 LRIT3Q3SXY7 679 aa16.75■□□□□ 0.27
CXCL12-202ENST00000374426 WDR78Q5VTH9 848 aa16.75■□□□□ 0.27
CXCL12-202ENST00000374426 PANK1Q8TE04 598 aa16.75■□□□□ 0.27
CXCL12-202ENST00000374426 RPAP3Q9H6T3 665 aaPredicted RBP16.75■□□□□ 0.27
CXCL12-202ENST00000374426 POLR3DP05423 398 aaPredicted RBP16.74■□□□□ 0.27
CXCL12-202ENST00000374426 HOXC6P09630 235 aa16.74■□□□□ 0.27
CXCL12-202ENST00000374426 PDE6AP16499 860 aa16.74■□□□□ 0.27
CXCL12-202ENST00000374426 GRB14Q14449 540 aa16.74■□□□□ 0.27
CXCL12-202ENST00000374426 SEPT2Q15019 361 aa16.74■□□□□ 0.27
CXCL12-202ENST00000374426 SLC9C2Q5TAH2 1124 aa16.74■□□□□ 0.27
CXCL12-202ENST00000374426 MFSD14CQ5VZR4 134 aa16.74■□□□□ 0.27
CXCL12-202ENST00000374426 GPR153Q6NV75 609 aa16.74■□□□□ 0.27
CXCL12-202ENST00000374426 TDHQ8IZJ6 230 aa16.74■□□□□ 0.27
CXCL12-202ENST00000374426 RHPN1Q8TCX5 695 aa16.74■□□□□ 0.27
CXCL12-202ENST00000374426 A0A1W2PRG0 241 aa16.73■□□□□ 0.27
CXCL12-202ENST00000374426 TTF1Q15361 905 aaPredicted RBP16.73■□□□□ 0.27
CXCL12-202ENST00000374426 SLC17A8Q8NDX2 589 aa16.73■□□□□ 0.27
CXCL12-202ENST00000374426 NPLOC4Q8TAT6 608 aa16.73■□□□□ 0.27
CXCL12-202ENST00000374426 CRNKL1Q9BZJ0 848 aaKnown RBP16.73■□□□□ 0.27
CXCL12-202ENST00000374426 UBE2OQ9C0C9 1292 aaKnown RBP16.73■□□□□ 0.27
CXCL12-202ENST00000374426 MCM9Q9NXL9 1143 aa16.73■□□□□ 0.27
CXCL12-202ENST00000374426 UNC80Q8N2C7 3258 aa16.72■□□□□ 0.27
CXCL12-202ENST00000374426 ZNF532Q9HCE3 1301 aa16.72■□□□□ 0.27
CXCL12-202ENST00000374426 NAV1Q8NEY1 1877 aa16.72■□□□□ 0.27
CXCL12-202ENST00000374426 TCRBV5S4A2TA0A5A2 114 aa16.72■□□□□ 0.27
CXCL12-202ENST00000374426 IGHA2P01877 340 aa16.72■□□□□ 0.27
CXCL12-202ENST00000374426 CYP2C19P33261 490 aa16.72■□□□□ 0.27
CXCL12-202ENST00000374426 HSP90AB4PQ58FF6 505 aa16.72■□□□□ 0.27
CXCL12-202ENST00000374426 Q7L0L9 218 aa16.72■□□□□ 0.27
CXCL12-202ENST00000374426 DEFB123Q8N688 67 aa16.72■□□□□ 0.27
CXCL12-202ENST00000374426 SDR42E1Q8WUS8 393 aa16.72■□□□□ 0.27
CXCL12-202ENST00000374426 DCP1AQ9NPI6 582 aaPredicted RBP16.72■□□□□ 0.27
CXCL12-202ENST00000374426 DDX20Q9UHI6 824 aaKnown RBP16.72■□□□□ 0.27
CXCL12-202ENST00000374426 IVNS1ABPQ9Y6Y0 642 aa16.72■□□□□ 0.27
CXCL12-202ENST00000374426 FRMPD3Q5JV73 1810 aa16.71■□□□□ 0.27
CXCL12-202ENST00000374426 GOLIM4O00461 696 aa16.71■□□□□ 0.27
CXCL12-202ENST00000374426 MPHOSPH10O00566 681 aaKnown RBP16.71■□□□□ 0.27
CXCL12-202ENST00000374426 CYP2D6P10635 497 aa16.71■□□□□ 0.27
CXCL12-202ENST00000374426 ATP2B2Q01814 1243 aa16.71■□□□□ 0.27
CXCL12-202ENST00000374426 LCORLQ8N3X6 602 aa16.71■□□□□ 0.27
CXCL12-202ENST00000374426 SLC44A5Q8NCS7 719 aa16.71■□□□□ 0.27
CXCL12-202ENST00000374426 TRPV1Q8NER1 839 aa16.71■□□□□ 0.27
CXCL12-202ENST00000374426 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.71■□□□□ 0.27
CXCL12-202ENST00000374426 MOV10L1Q9BXT6 1211 aaKnown RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms