RNA–Protein interactions for RNA: ENST00000371121.4

SMARCA1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-201ENST00000371121 KIF1AQ12756 1690 aa13.22□□□□□ -0.29
SMARCA1-201ENST00000371121 FAM205CA6NFA0 338 aa13.21□□□□□ -0.29
SMARCA1-201ENST00000371121 RASSF10A6NK89 507 aa13.21□□□□□ -0.29
SMARCA1-201ENST00000371121 IGDCC4Q8TDY8 1250 aa13.21□□□□□ -0.29
SMARCA1-201ENST00000371121 PUS3Q9BZE2 481 aaKnown RBP13.21□□□□□ -0.29
SMARCA1-201ENST00000371121 TTF2Q9UNY4 1162 aaKnown RBP13.21□□□□□ -0.29
SMARCA1-201ENST00000371121 AMOTL2Q9Y2J4 779 aa13.21□□□□□ -0.29
SMARCA1-201ENST00000371121 SPATA1Q5VX52 437 aa13.21□□□□□ -0.29
SMARCA1-201ENST00000371121 FAM228AQ86W67 206 aa13.21□□□□□ -0.29
SMARCA1-201ENST00000371121 LACRTQ9GZZ8 138 aa13.21□□□□□ -0.29
SMARCA1-201ENST00000371121 WWC3Q9ULE0 1092 aa13.21□□□□□ -0.29
SMARCA1-201ENST00000371121 ARHGAP23Q9P227 1491 aa13.21□□□□□ -0.29
SMARCA1-201ENST00000371121 ADORA1P30542 326 aa13.21□□□□□ -0.3
SMARCA1-201ENST00000371121 MRPS25P82663 173 aaKnown RBP13.21□□□□□ -0.3
SMARCA1-201ENST00000371121 AKAP17AQ02040 695 aaKnown RBP13.21□□□□□ -0.3
SMARCA1-201ENST00000371121 HSP90B2PQ58FF3 399 aa13.21□□□□□ -0.3
SMARCA1-201ENST00000371121 LMBR1LQ6UX01 489 aa13.21□□□□□ -0.3
SMARCA1-201ENST00000371121 IRF2BP1Q8IU81 584 aa13.21□□□□□ -0.3
SMARCA1-201ENST00000371121 OXER1Q8TDS5 423 aa13.21□□□□□ -0.3
SMARCA1-201ENST00000371121 ZKSCAN4Q969J2 545 aaPredicted RBP13.21□□□□□ -0.3
SMARCA1-201ENST00000371121 CSRNP2Q9H175 543 aa13.21□□□□□ -0.3
SMARCA1-201ENST00000371121 BCORQ6W2J9 1755 aa13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 TARSL2A2RTX5 802 aaKnown RBP13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 NKRFO15226 690 aaKnown RBP eCLIP13.2□□□□□ -0.36e-8■■■□□ 16.7
SMARCA1-201ENST00000371121 CCT6AP40227 531 aaKnown RBP13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 DDR1Q08345 913 aa13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 NR5A1Q13285 461 aa13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 KRT31Q15323 416 aa13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 BCAS4Q8TDM0 211 aa13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 EPSTI1Q96J88 318 aa13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 STRN4Q9NRL3 753 aa13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 WDR17Q8IZU2 1322 aa13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 SCP2P22307 547 aa13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 MAP2K2P36507 400 aa13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 DMGDHQ9UI17 866 aaKnown RBP13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 NOSTRINQ8IVI9 506 aa13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 CTCFLQ8NI51 663 aaPredicted RBP13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 LY9Q9HBG7 655 aa13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 A1CFQ9NQ94 594 aaKnown RBP13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 MYO1AQ9UBC5 1043 aa13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 KCNJ14Q9UNX9 436 aa13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 WDR19Q8NEZ3 1342 aa13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 SYNRGQ9UMZ2 1314 aa13.2□□□□□ -0.3
SMARCA1-201ENST00000371121 C21orf2O43822 256 aa13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 TRIML1Q8N9V2 468 aa13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 NEUROD6Q96NK8 337 aa13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 MCM8Q9UJA3 840 aa13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 MYH10P35580 1976 aa13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 C2orf54Q08AI8 447 aa13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 JPH2Q9BR39 696 aaPredicted RBP13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 SPATA31A3Q5VYP0 1347 aa13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 ATXN2Q99700 1313 aaKnown RBP13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 FSBPO95073 299 aa13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 NDUFA10O95299 355 aa13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 TUBB4BP68371 445 aa13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 PPARAQ07869 468 aa13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 ZNF790Q6PG37 636 aa13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 CAPZA3Q96KX2 299 aa13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 GUCA1BQ9UMX6 200 aa13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 AXIN2Q9Y2T1 843 aa13.19□□□□□ -0.3
SMARCA1-201ENST00000371121 TIAM2Q8IVF5 1701 aa13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 MMP1P03956 469 aa13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 KLHL10Q6JEL2 608 aa13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 CREG2Q8IUH2 290 aa13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 PAGE5Q96GU1 130 aa13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 FAXDC2Q96IV6 333 aa13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 PURBQ96QR8 312 aaKnown RBP13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 GBP3Q9H0R5 595 aa13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 LIMA1Q9UHB6 759 aaKnown RBP13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 ANGEL1Q9UNK9 670 aaKnown RBP13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 STK36Q9NRP7 1315 aa13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 GOLGA6CA6NDK9 693 aa13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 ZNF263O14978 683 aa13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 GOLGA6DP0CG33 693 aa13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 ANKRD13DQ6ZTN6 518 aa13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 NCOA7Q8NI08 942 aa13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 PIK3R5Q8WYR1 880 aa13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 CAPS2Q9BXY5 557 aa13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 GOLGA6AQ9NYA3 693 aa13.18□□□□□ -0.3
SMARCA1-201ENST00000371121 XDHP47989 1333 aa13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 CPLX1O14810 134 aa13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 DDX58O95786 925 aaKnown RBP13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 METAP2P50579 478 aaKnown RBP eCLIP13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 GNGT1P63211 74 aa13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 SKOR1P84550 965 aa13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 PPFIA1Q13136 1202 aa13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 SH2D3CQ8N5H7 860 aa13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 ANKRD20A12PQ8NF67 263 aa13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 CCDC148Q8NFR7 591 aa13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 SMARCC1Q92922 1105 aaPredicted RBP13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 SRPRBQ9Y5M8 271 aaKnown RBP13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 A0A087WZG4 1122 aa13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 RASSF9O75901 435 aa13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 MICU3Q86XE3 530 aa13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 CNGA4Q8IV77 575 aa13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 CMTR1Q8N1G2 835 aaKnown RBP13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 TNRQ92752 1358 aa13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 TTC26A0AVF1 554 aa13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 IFIT1P09914 478 aaKnown RBP13.17□□□□□ -0.3
SMARCA1-201ENST00000371121 MNAT1P51948 309 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms