RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 DYNLL1P63167 89 aaKnown RBP11.36□□□□□ -0.59
CHD3-201ENST00000330494 TRPC3Q13507 836 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 PTPROQ16827 1216 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 HAUS7Q99871 368 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 ALAS1P13196 640 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 METTL13Q8N6R0 699 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 CEP63Q96MT8 703 aa11.36□□□□□ -0.59
CHD3-201ENST00000330494 SPOPO43791 374 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 ZEB2O60315 1214 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 NR1I2O75469 434 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 FAM196AQ6ZSG2 479 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 SSH3Q8TE77 659 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 SMCR8Q8TEV9 937 aaPredicted RBP11.35□□□□□ -0.59
CHD3-201ENST00000330494 KCNK9Q9NPC2 374 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 VPS18Q9P253 973 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 INSRP06213 1382 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 PRPHP41219 470 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 MXRA7P84157 204 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 RNF34Q969K3 372 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 CLIC6Q96NY7 704 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 KIF4AO95239 1232 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 BAG6P46379 1132 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 NLRP12P59046 1061 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 ARHGAP44Q17R89 818 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 MICALL1Q8N3F8 863 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 SUPT20HQ8NEM7 779 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 EEF2KMTQ96G04 330 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 NEO1Q92859 1461 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 NLRP1Q9C000 1473 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 MTX1Q13505 466 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 PRR16Q569H4 304 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 APBB1IPQ7Z5R6 666 aaPredicted RBP11.35□□□□□ -0.59
CHD3-201ENST00000330494 CNGA4Q8IV77 575 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 REXO1Q8N1G1 1221 aaKnown RBP11.35□□□□□ -0.59
CHD3-201ENST00000330494 GTF3C6Q969F1 213 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 CCDC94Q9BW85 323 aaPredicted RBP11.35□□□□□ -0.59
CHD3-201ENST00000330494 DBNDD1Q9H9R9 158 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 RASA3Q14644 834 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 INF2Q27J81 1249 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 TTC31Q49AM3 519 aaPredicted RBP11.35□□□□□ -0.59
CHD3-201ENST00000330494 ARHGEF16Q5VV41 709 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 ATL3Q6DD88 541 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 PI16Q6UXB8 463 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 GIGYF2Q6Y7W6 1299 aaKnown RBP11.35□□□□□ -0.59
CHD3-201ENST00000330494 KRT25Q7Z3Z0 450 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 TRIM31Q9BZY9 425 aa11.35□□□□□ -0.59
CHD3-201ENST00000330494 CERKLQ49MI3 558 aaPredicted RBP11.34□□□□□ -0.59
CHD3-201ENST00000330494 UTP14CQ5TAP6 766 aaKnown RBP11.34□□□□□ -0.59
CHD3-201ENST00000330494 NAP1L4Q99733 375 aaKnown RBP11.34□□□□□ -0.59
CHD3-201ENST00000330494 ARPP21Q9UBL0 812 aaPredicted RBP11.34□□□□□ -0.59
CHD3-201ENST00000330494 SHROOM2Q13796 1616 aa11.34□□□□□ -0.59
CHD3-201ENST00000330494 UBXN2AP68543 259 aa11.34□□□□□ -0.59
CHD3-201ENST00000330494 ANTXR1Q9H6X2 564 aa11.34□□□□□ -0.59
CHD3-201ENST00000330494 MYO1AQ9UBC5 1043 aa11.34□□□□□ -0.59
CHD3-201ENST00000330494 THRAP3Q9Y2W1 955 aaKnown RBP11.34□□□□□ -0.59
CHD3-201ENST00000330494 ERVK-7P63135 1459 aa11.34□□□□□ -0.59
CHD3-201ENST00000330494 SF3A3Q12874 501 aaKnown RBP eCLIP11.34□□□□□ -0.599e-16■■■■□ 23.7
CHD3-201ENST00000330494 FAM102BQ5T8I3 360 aa11.34□□□□□ -0.59
CHD3-201ENST00000330494 C10orf67Q8IYJ2 551 aa11.34□□□□□ -0.59
CHD3-201ENST00000330494 PCDHB13Q9Y5F0 798 aa11.34□□□□□ -0.59
CHD3-201ENST00000330494 ZNF804BA4D1E1 1349 aa11.34□□□□□ -0.59
CHD3-201ENST00000330494 STX10O60499 249 aa11.34□□□□□ -0.59
CHD3-201ENST00000330494 FERP16591 822 aa11.34□□□□□ -0.59
CHD3-201ENST00000330494 PPP2R5DQ14738 602 aa11.34□□□□□ -0.59
CHD3-201ENST00000330494 PPP1R21Q6ZMI0 780 aa11.34□□□□□ -0.59
CHD3-201ENST00000330494 KDM5DQ9BY66 1539 aa11.34□□□□□ -0.59
CHD3-201ENST00000330494 TNKSO95271 1327 aa11.34□□□□□ -0.59
CHD3-201ENST00000330494 CETN3O15182 167 aa11.33□□□□□ -0.59
CHD3-201ENST00000330494 CYP2J2P51589 502 aa11.33□□□□□ -0.59
CHD3-201ENST00000330494 PPP2R3AQ06190 1150 aa11.33□□□□□ -0.59
CHD3-201ENST00000330494 ADCK5Q3MIX3 580 aa11.33□□□□□ -0.59
CHD3-201ENST00000330494 PNMA1Q8ND90 353 aa11.33□□□□□ -0.59
CHD3-201ENST00000330494 SRP68Q9UHB9 627 aaKnown RBP11.33□□□□□ -0.59
CHD3-201ENST00000330494 NFE2L3Q9Y4A8 694 aa11.33□□□□□ -0.59
CHD3-201ENST00000330494 PPEF1O14829 653 aaPredicted RBP11.33□□□□□ -0.6
CHD3-201ENST00000330494 PCCAP05165 728 aaPredicted RBP11.33□□□□□ -0.6
CHD3-201ENST00000330494 SPECC1LQ69YQ0 1117 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 JAKMIP2Q96AA8 810 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 AZI2Q9H6S1 392 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.33□□□□□ -0.6
CHD3-201ENST00000330494 EXOC3O60645 756 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 SEL1L2Q5TEA6 688 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 ZNF589Q86UQ0 364 aaPredicted RBP11.33□□□□□ -0.6
CHD3-201ENST00000330494 TBC1D22AQ8WUA7 517 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 TSGA10Q9BZW7 698 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 NLRC4Q9NPP4 1024 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 LMBRD1Q9NUN5 540 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 ADKP55263 362 aaKnown RBP11.33□□□□□ -0.6
CHD3-201ENST00000330494 ZNF827Q17R98 1081 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 KIFAP3Q92845 792 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 FAM207AQ9NSI2 230 aaPredicted RBP11.33□□□□□ -0.6
CHD3-201ENST00000330494 CLIC4Q9Y696 253 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 GAS7O60861 476 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 DBNLQ9UJU6 430 aaKnown RBP11.33□□□□□ -0.6
CHD3-201ENST00000330494 SYNMO15061 1565 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 PREX2Q70Z35 1606 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 ATP2B4P23634 1241 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 KCTD1Q719H9 257 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 PSTPIP2Q9H939 334 aa11.33□□□□□ -0.6
CHD3-201ENST00000330494 NPHP4O75161 1426 aaPredicted RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms