RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 KRT2P35908 639 aa25.03■■□□□ 1.6
SHMT1-201ENST00000316694 MAP3K9P80192 1104 aa25.03■■□□□ 1.6
SHMT1-201ENST00000316694 CHRNDQ07001 517 aa25.03■■□□□ 1.6
SHMT1-201ENST00000316694 CPLX3Q8WVH0 158 aa25.03■■□□□ 1.6
SHMT1-201ENST00000316694 AATFQ9NY61 560 aaKnown RBP eCLIP25.03■■□□□ 1.6
SHMT1-201ENST00000316694 MAGEB6P1A0A0J9YX57 407 aa25.03■■□□□ 1.6
SHMT1-201ENST00000316694 AKR1B15C9JRZ8 316 aaPredicted RBP25.03■■□□□ 1.6
SHMT1-201ENST00000316694 ZRANB2O95218 330 aaKnown RBP eCLIP25.03■■□□□ 1.6
SHMT1-201ENST00000316694 PPP2R3AQ06190 1150 aa25.03■■□□□ 1.6
SHMT1-201ENST00000316694 PKN1Q16512 942 aa25.03■■□□□ 1.6
SHMT1-201ENST00000316694 TEX35Q5T0J7 233 aa25.03■■□□□ 1.6
SHMT1-201ENST00000316694 SMYD4Q8IYR2 804 aaPredicted RBP25.03■■□□□ 1.6
SHMT1-201ENST00000316694 ENAHQ8N8S7 591 aaPredicted RBP25.03■■□□□ 1.6
SHMT1-201ENST00000316694 SYMPKQ92797 1274 aaKnown RBP25.03■■□□□ 1.6
SHMT1-201ENST00000316694 V9GY48 417 aaPredicted RBP25.03■■□□□ 1.6
SHMT1-201ENST00000316694 SYNRGQ9UMZ2 1314 aa25.02■■□□□ 1.6
SHMT1-201ENST00000316694 SOWAHDA6NJG2 315 aa25.02■■□□□ 1.6
SHMT1-201ENST00000316694 TPM1P09493 284 aa25.02■■□□□ 1.6
SHMT1-201ENST00000316694 CD44P16070 742 aaKnown RBP25.02■■□□□ 1.6
SHMT1-201ENST00000316694 CRKLP46109 303 aaKnown RBP25.02■■□□□ 1.6
SHMT1-201ENST00000316694 MRFAP1Q9Y605 127 aa25.02■■□□□ 1.6
SHMT1-201ENST00000316694 CYP2D7A0A087X1C5 515 aa25.02■■□□□ 1.6
SHMT1-201ENST00000316694 PLEKHA8P1O95397 391 aa25.02■■□□□ 1.6
SHMT1-201ENST00000316694 ATP6V1AP38606 617 aa25.02■■□□□ 1.6
SHMT1-201ENST00000316694 PLA2G4AP47712 749 aa25.02■■□□□ 1.6
SHMT1-201ENST00000316694 PAGE5Q96GU1 130 aa25.02■■□□□ 1.6
SHMT1-201ENST00000316694 MRPL44Q9H9J2 332 aaKnown RBP25.02■■□□□ 1.6
SHMT1-201ENST00000316694 SPATA1Q5VX52 437 aa25.01■■□□□ 1.59
SHMT1-201ENST00000316694 KIFC2Q96AC6 838 aa25.01■■□□□ 1.59
SHMT1-201ENST00000316694 ZSCAN10Q96SZ4 725 aaPredicted RBP25.01■■□□□ 1.59
SHMT1-201ENST00000316694 PHF20Q9BVI0 1012 aa25.01■■□□□ 1.59
SHMT1-201ENST00000316694 CCDC87Q9NVE4 849 aa25.01■■□□□ 1.59
SHMT1-201ENST00000316694 WNT7AO00755 349 aa25.01■■□□□ 1.59
SHMT1-201ENST00000316694 IFIT1BQ5T764 474 aaKnown RBP25.01■■□□□ 1.59
SHMT1-201ENST00000316694 PPFIBP1Q86W92 1011 aa25.01■■□□□ 1.59
SHMT1-201ENST00000316694 IGSF22Q8N9C0 903 aa25.01■■□□□ 1.59
SHMT1-201ENST00000316694 CCDC12Q8WUD4 166 aaPredicted RBP25.01■■□□□ 1.59
SHMT1-201ENST00000316694 IRX2Q9BZI1 471 aaPredicted RBP25.01■■□□□ 1.59
SHMT1-201ENST00000316694 MYH2Q9UKX2 1941 aa25■■□□□ 1.59
SHMT1-201ENST00000316694 CCDC175P0C221 793 aa25■■□□□ 1.59
SHMT1-201ENST00000316694 RBL2Q08999 1139 aa25■■□□□ 1.59
SHMT1-201ENST00000316694 ZNF174Q15697 407 aa25■■□□□ 1.59
SHMT1-201ENST00000316694 CATIPQ7Z7H3 387 aa25■■□□□ 1.59
SHMT1-201ENST00000316694 LZTFL1Q9NQ48 299 aa25■■□□□ 1.59
SHMT1-201ENST00000316694 NOM1Q5C9Z4 860 aaKnown RBP25■■□□□ 1.59
SHMT1-201ENST00000316694 DOT1LQ8TEK3 1739 aa24.99■■□□□ 1.59
SHMT1-201ENST00000316694 COL14A1Q05707 1796 aaKnown RBP24.99■■□□□ 1.59
SHMT1-201ENST00000316694 GYG1P46976 350 aa24.99■■□□□ 1.59
SHMT1-201ENST00000316694 APTXQ7Z2E3 356 aaKnown RBP24.99■■□□□ 1.59
SHMT1-201ENST00000316694 STAMQ92783 540 aa24.99■■□□□ 1.59
SHMT1-201ENST00000316694 PLCH1Q4KWH8 1693 aa24.99■■□□□ 1.59
SHMT1-201ENST00000316694 ERICH4A6NGS2 130 aa24.98■■□□□ 1.59
SHMT1-201ENST00000316694 PPP2R5BQ15173 497 aa24.98■■□□□ 1.59
SHMT1-201ENST00000316694 PANX2Q96RD6 677 aa24.98■■□□□ 1.59
SHMT1-201ENST00000316694 NIP7Q9Y221 180 aaKnown RBP eCLIP24.98■■□□□ 1.59
SHMT1-201ENST00000316694 CAMTA2O94983 1202 aa24.98■■□□□ 1.59
SHMT1-201ENST00000316694 FUT2Q10981 343 aa24.98■■□□□ 1.59
SHMT1-201ENST00000316694 CUL4BQ13620 913 aa24.98■■□□□ 1.59
SHMT1-201ENST00000316694 ANAPC4Q9UJX5 808 aa24.98■■□□□ 1.59
SHMT1-201ENST00000316694 WTIPA6NIX2 430 aaPredicted RBP24.97■■□□□ 1.59
SHMT1-201ENST00000316694 PRPF3O43395 683 aaKnown RBP24.97■■□□□ 1.59
SHMT1-201ENST00000316694 COBLO75128 1261 aa24.97■■□□□ 1.59
SHMT1-201ENST00000316694 DYNLL1P63167 89 aaKnown RBP24.97■■□□□ 1.59
SHMT1-201ENST00000316694 ITPK1Q13572 414 aa24.97■■□□□ 1.59
SHMT1-201ENST00000316694 RAD9BQ6WBX8 426 aa24.97■■□□□ 1.59
SHMT1-201ENST00000316694 SH3RF1Q7Z6J0 888 aa24.97■■□□□ 1.59
SHMT1-201ENST00000316694 GPR161Q8N6U8 529 aaKnown RBP24.97■■□□□ 1.59
SHMT1-201ENST00000316694 FERMT2Q96AC1 680 aa24.97■■□□□ 1.59
SHMT1-201ENST00000316694 BRMS1Q9HCU9 246 aa24.97■■□□□ 1.59
SHMT1-201ENST00000316694 KDM4FA0A1W2PPD8 638 aa24.96■■□□□ 1.59
SHMT1-201ENST00000316694 DPYDQ12882 1025 aa24.96■■□□□ 1.59
SHMT1-201ENST00000316694 ADD3Q9UEY8 706 aaKnown RBP24.96■■□□□ 1.59
SHMT1-201ENST00000316694 BAZ2AQ9UIF9 1905 aaKnown RBP24.96■■□□□ 1.59
SHMT1-201ENST00000316694 IQCA1Q86XH1 822 aa24.96■■□□□ 1.59
SHMT1-201ENST00000316694 GSDMAQ96QA5 445 aa24.96■■□□□ 1.59
SHMT1-201ENST00000316694 RIOK1Q9BRS2 568 aaKnown RBP24.96■■□□□ 1.59
SHMT1-201ENST00000316694 LOC102724428A0A0B4J2F2 783 aa24.95■■□□□ 1.59
SHMT1-201ENST00000316694 A0A0U1RQJ8 604 aa24.95■■□□□ 1.59
SHMT1-201ENST00000316694 SIK1P57059 783 aa24.95■■□□□ 1.59
SHMT1-201ENST00000316694 PARP10Q53GL7 1025 aa24.95■■□□□ 1.59
SHMT1-201ENST00000316694 TTC38Q5R3I4 469 aa24.95■■□□□ 1.59
SHMT1-201ENST00000316694 ATRIPQ8WXE1 791 aa24.95■■□□□ 1.59
SHMT1-201ENST00000316694 ZSWIM4Q9H7M6 989 aa24.95■■□□□ 1.59
SHMT1-201ENST00000316694 CTNND2Q9UQB3 1225 aa24.95■■□□□ 1.59
SHMT1-201ENST00000316694 ADGRG1Q9Y653 693 aa24.95■■□□□ 1.59
SHMT1-201ENST00000316694 BAZ2BQ9UIF8 2168 aaKnown RBP24.95■■□□□ 1.59
SHMT1-201ENST00000316694 PTGDRQ13258 359 aa24.95■■□□□ 1.58
SHMT1-201ENST00000316694 FILIP1LQ4L180 1135 aa24.95■■□□□ 1.58
SHMT1-201ENST00000316694 CDKAL1Q5VV42 579 aa24.95■■□□□ 1.58
SHMT1-201ENST00000316694 CC2D1AQ6P1N0 951 aaPredicted RBP24.95■■□□□ 1.58
SHMT1-201ENST00000316694 RSRC2Q7L4I2 434 aaKnown RBP24.95■■□□□ 1.58
SHMT1-201ENST00000316694 MYH14Q7Z406 1995 aaKnown RBP24.95■■□□□ 1.58
SHMT1-201ENST00000316694 PPP1R3GB7ZBB8 358 aa24.94■■□□□ 1.58
SHMT1-201ENST00000316694 POLR3GO15318 223 aaPredicted RBP24.94■■□□□ 1.58
SHMT1-201ENST00000316694 NTSR2O95665 410 aa24.94■■□□□ 1.58
SHMT1-201ENST00000316694 DDB1Q16531 1140 aa24.94■■□□□ 1.58
SHMT1-201ENST00000316694 CT47A1Q5JQC4 288 aaPredicted RBP24.94■■□□□ 1.58
SHMT1-201ENST00000316694 CTAGE1Q96RT6 745 aa24.94■■□□□ 1.58
SHMT1-201ENST00000316694 BLZF1Q9H2G9 400 aa24.94■■□□□ 1.58
SHMT1-201ENST00000316694 GNL3LQ9NVN8 582 aaKnown RBP24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms