RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 KRT71Q3SY84 523 aa12.27□□□□□ -0.44
MSH6-201ENST00000234420 NSMFQ6X4W1 530 aa12.27□□□□□ -0.44
MSH6-201ENST00000234420 CADPS2Q86UW7 1296 aa12.27□□□□□ -0.44
MSH6-201ENST00000234420 FAM71BQ8TC56 605 aa12.27□□□□□ -0.44
MSH6-201ENST00000234420 RTL1A6NKG5 1358 aa12.27□□□□□ -0.44
MSH6-201ENST00000234420 CHPF2Q9P2E5 772 aa12.27□□□□□ -0.44
MSH6-201ENST00000234420 BCAP29Q9UHQ4 241 aa12.27□□□□□ -0.44
MSH6-201ENST00000234420 TESPA1A2RU30 521 aaPredicted RBP12.27□□□□□ -0.45
MSH6-201ENST00000234420 RTN1Q16799 776 aa12.27□□□□□ -0.45
MSH6-201ENST00000234420 KLHL7Q8IXQ5 586 aa12.27□□□□□ -0.45
MSH6-201ENST00000234420 NFATC2IPQ8NCF5 419 aa12.27□□□□□ -0.45
MSH6-201ENST00000234420 UBN1Q9NPG3 1134 aa12.27□□□□□ -0.45
MSH6-201ENST00000234420 KLHL14Q9P2G3 628 aa12.27□□□□□ -0.45
MSH6-201ENST00000234420 CREB3O43889 395 aa12.27□□□□□ -0.45
MSH6-201ENST00000234420 ATP6V1E1P36543 226 aa12.27□□□□□ -0.45
MSH6-201ENST00000234420 DHX58Q96C10 678 aa12.27□□□□□ -0.45
MSH6-201ENST00000234420 AATFQ9NY61 560 aaKnown RBP eCLIP12.27□□□□□ -0.45
MSH6-201ENST00000234420 CCDC93Q567U6 631 aa12.27□□□□□ -0.45
MSH6-201ENST00000234420 WBP4O75554 376 aaKnown RBP12.27□□□□□ -0.45
MSH6-201ENST00000234420 PDE6BP35913 854 aa12.27□□□□□ -0.45
MSH6-201ENST00000234420 PMS1P54277 932 aaKnown RBP12.27□□□□□ -0.45
MSH6-201ENST00000234420 IL1RL1Q01638 556 aa12.27□□□□□ -0.45
MSH6-201ENST00000234420 LONRF3Q496Y0 759 aa12.27□□□□□ -0.45
MSH6-201ENST00000234420 GRAMD4Q6IC98 578 aa12.27□□□□□ -0.45
MSH6-201ENST00000234420 CAPS2Q9BXY5 557 aa12.27□□□□□ -0.45
MSH6-201ENST00000234420 MLXIPQ9HAP2 919 aa12.27□□□□□ -0.45
MSH6-201ENST00000234420 DYTNA2CJ06 578 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 SPDYE1Q8NFV5 336 aaPredicted RBP12.26□□□□□ -0.45
MSH6-201ENST00000234420 TCP11Q8WWU5 503 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 SCOCQ9UIL1 159 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 ATAD2Q6PL18 1390 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 MAN1A2O60476 641 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 STX2P32856 288 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 TTC22Q5TAA0 569 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 PIP4K2CQ8TBX8 421 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 KCNG4Q8TDN1 519 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 POMGNT1Q8WZA1 660 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 ZBED4O75132 1171 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 EEF1DP29692 281 aaKnown RBP12.26□□□□□ -0.45
MSH6-201ENST00000234420 SLC12A1Q13621 1099 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 ZNF280CQ8ND82 737 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 RBSNQ9H1K0 784 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 ZNF711Q9Y462 761 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 CASP2P42575 452 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 NCAPH2Q6IBW4 605 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 NEK1Q96PY6 1258 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 NSD3Q9BZ95 1437 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 PPFIA4O75335 1185 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 AFAP1L2Q8N4X5 818 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 FAM204AQ9H8W3 233 aa12.26□□□□□ -0.45
MSH6-201ENST00000234420 SCNN1DP51172 638 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 SCHIP1Q9P0W5 487 aaPredicted RBP12.25□□□□□ -0.45
MSH6-201ENST00000234420 FMNL1O95466 1100 aaPredicted RBP12.25□□□□□ -0.45
MSH6-201ENST00000234420 ST7Q9NRC1 585 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 DNM2P50570 870 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 GUCY2FP51841 1108 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 MSANTD4Q8NCY6 345 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 MICAL3Q7RTP6 2002 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 AGRPO00253 132 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 CAPN9O14815 690 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 IFT88Q13099 833 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 DENND2CQ68D51 928 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 SZRD1Q7Z422 152 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 TROVE2P10155 538 aaKnown RBP eCLIP12.25□□□□□ -0.45
MSH6-201ENST00000234420 ESRRGP62508 458 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 TAF11Q15544 211 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 ANO4Q32M45 955 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 CCDC184Q52MB2 194 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 SCYL2Q6P3W7 929 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 RDH13Q8NBN7 331 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 NCOA7Q8NI08 942 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 PLCB1Q9NQ66 1216 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 SLC5A4Q9NY91 659 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 SLC9C2Q5TAH2 1124 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 CNGA4Q8IV77 575 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 TCEANC2Q96MN5 208 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 LRRC27Q9C0I9 530 aa12.25□□□□□ -0.45
MSH6-201ENST00000234420 LOC102724159A0A0B4J2E5 919 aa12.24□□□□□ -0.45
MSH6-201ENST00000234420 CFBP00751 764 aa12.24□□□□□ -0.45
MSH6-201ENST00000234420 YARSP54577 528 aaKnown RBP12.24□□□□□ -0.45
MSH6-201ENST00000234420 PWP2Q15269 919 aaKnown RBP12.24□□□□□ -0.45
MSH6-201ENST00000234420 XAGE3Q8WTP9 111 aa12.24□□□□□ -0.45
MSH6-201ENST00000234420 YIPF3Q9GZM5 350 aa12.24□□□□□ -0.45
MSH6-201ENST00000234420 EMILIN1Q9Y6C2 1016 aa12.24□□□□□ -0.45
MSH6-201ENST00000234420 PI4KAP2A4QPH2 592 aa12.24□□□□□ -0.45
MSH6-201ENST00000234420 SERPINI2O75830 405 aa12.24□□□□□ -0.45
MSH6-201ENST00000234420 HNRNPCP07910 306 aaKnown RBP eCLIP12.24□□□□□ -0.45
MSH6-201ENST00000234420 CCDC159P0C7I6 412 aa12.24□□□□□ -0.45
MSH6-201ENST00000234420 NXNQ6DKJ4 435 aa12.24□□□□□ -0.45
MSH6-201ENST00000234420 CDAN1Q8IWY9 1227 aa12.24□□□□□ -0.45
MSH6-201ENST00000234420 PI4KAP1Q8N8J0 262 aa12.24□□□□□ -0.45
MSH6-201ENST00000234420 DHX29Q7Z478 1369 aaKnown RBP12.24□□□□□ -0.45
MSH6-201ENST00000234420 TEX13AQ9BXU3 409 aaPredicted RBP12.24□□□□□ -0.45
MSH6-201ENST00000234420 CCDC61Q9Y6R9 512 aa12.24□□□□□ -0.45
MSH6-201ENST00000234420 PARP1P09874 1014 aaKnown RBP12.24□□□□□ -0.45
MSH6-201ENST00000234420 NBPF10Q6P3W6 841 aaKnown RBP12.24□□□□□ -0.45
MSH6-201ENST00000234420 FAM180AQ6UWF9 173 aa12.24□□□□□ -0.45
MSH6-201ENST00000234420 SPOPO43791 374 aa12.24□□□□□ -0.45
MSH6-201ENST00000234420 NUCB1Q02818 461 aa12.24□□□□□ -0.45
MSH6-201ENST00000234420 QTRT2Q9H974 415 aaKnown RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms