RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Lce1fB9EJP6 147 aa5.38□□□□□ -1.55
Shh-201ENSMUST00000002708 Lce1a1Q9CQH5 143 aa5.38□□□□□ -1.55
Shh-201ENSMUST00000002708 Syne1Q6ZWR6 8799 aa5.38□□□□□ -1.55
Shh-201ENSMUST00000002708 Krtap4-6Q3V4B7 195 aa5.34□□□□□ -1.55
Shh-201ENSMUST00000002708 Gm6217A0A1Y7VJK9 128 aa5.32□□□□□ -1.56
Shh-201ENSMUST00000002708 Gm10100J3QK64 120 aa5.32□□□□□ -1.56
Shh-201ENSMUST00000002708 Lce3bQ9CQM7 98 aa5.29□□□□□ -1.56
Shh-201ENSMUST00000002708 Krtap31-2Q8CAY5 177 aa5.24□□□□□ -1.57
Shh-201ENSMUST00000002708 Gm38119A0A0A6YX29 146 aa5.18□□□□□ -1.58
Shh-201ENSMUST00000002708 Gm10142J3KMP7 120 aa5.18□□□□□ -1.58
Shh-201ENSMUST00000002708 Krtap19-4Q925H7 84 aa5.18□□□□□ -1.58
Shh-201ENSMUST00000002708 Lce1gQ9D195 139 aa5.1□□□□□ -1.59
Shh-201ENSMUST00000002708 Lce3cQ91V05 98 aa5.07□□□□□ -1.6
Shh-201ENSMUST00000002708 Lce3dE9Q8V1 98 aa5.04□□□□□ -1.6
Shh-201ENSMUST00000002708 Mt4P47945 62 aa5.04□□□□□ -1.6
Shh-201ENSMUST00000002708 Fsip2A2ARZ3 6995 aa5.02□□□□□ -1.61
Shh-201ENSMUST00000002708 Gm11596B1AQB0 205 aa5.01□□□□□ -1.61
Shh-201ENSMUST00000002708 Gm11564A2A4L9 201 aa5.01□□□□□ -1.61
Shh-201ENSMUST00000002708 Gm11595B1AQA7 289 aa5.01□□□□□ -1.61
Shh-201ENSMUST00000002708 Krtap4-8B1AQA8 209 aa5.01□□□□□ -1.61
Shh-201ENSMUST00000002708 Syne2Q6ZWQ0 6874 aaKnown RBP4.97□□□□□ -1.61
Shh-201ENSMUST00000002708 Sprr2hO70559 108 aa4.96□□□□□ -1.62
Shh-201ENSMUST00000002708 ObscnA2AAJ9 8891 aaKnown RBP4.95□□□□□ -1.62
Shh-201ENSMUST00000002708 Sprr2iO70560 76 aa4.95□□□□□ -1.62
Shh-201ENSMUST00000002708 Krtap4-9B1AQA9 244 aa4.92□□□□□ -1.62
Shh-201ENSMUST00000002708 Lce3eF8VQJ0 98 aa4.92□□□□□ -1.62
Shh-201ENSMUST00000002708 Lce3fQ6PAI4 98 aa4.92□□□□□ -1.62
Shh-201ENSMUST00000002708 A0A286YCP9 139 aa4.9□□□□□ -1.63
Shh-201ENSMUST00000002708 Lce1bQ9D149 137 aa4.88□□□□□ -1.63
Shh-201ENSMUST00000002708 Lce3aQ497I5 98 aa4.82□□□□□ -1.64
Shh-201ENSMUST00000002708 2300003K06RikA2A4M0 262 aa4.8□□□□□ -1.64
Shh-201ENSMUST00000002708 Sprr2eO70556 76 aa4.77□□□□□ -1.65
Shh-201ENSMUST00000002708 Krtap4-13Q9D7P3 165 aa4.77□□□□□ -1.65
Shh-201ENSMUST00000002708 Lce1lQ9D1G7 135 aa4.73□□□□□ -1.65
Shh-201ENSMUST00000002708 Sprr2fO70557 76 aa4.71□□□□□ -1.66
Shh-201ENSMUST00000002708 Sprr2kO70562 68 aa4.7□□□□□ -1.66
Shh-201ENSMUST00000002708 Lce1kJ3QP15 125 aa4.68□□□□□ -1.66
Shh-201ENSMUST00000002708 Krtap4-16Q91W93 202 aa4.68□□□□□ -1.66
Shh-201ENSMUST00000002708 Mt1P02802 61 aaKnown RBP4.65□□□□□ -1.66
Shh-201ENSMUST00000002708 Muc16A0A140LJ72 8478 aa4.56□□□□□ -1.68
Shh-201ENSMUST00000002708 Gm11568A2A4M2 211 aa4.47□□□□□ -1.69
Shh-201ENSMUST00000002708 Krtap9-1Q64526 186 aa4.47□□□□□ -1.69
Shh-201ENSMUST00000002708 Krtap20-2E9Q0A8 60 aa4.41□□□□□ -1.7
Shh-201ENSMUST00000002708 Macf1Q9QXZ0 7354 aaKnown RBP4.29□□□□□ -1.72
Shh-201ENSMUST00000002708 Krtap5-2Q9D5Z7 189 aa4.29□□□□□ -1.72
Shh-201ENSMUST00000002708 Gm45618A0A1B0GSA0 219 aa4.23□□□□□ -1.73
Shh-201ENSMUST00000002708 Krtap6-3A0A087WQL6 57 aa4.18□□□□□ -1.74
Shh-201ENSMUST00000002708 Gm10024A0A0A0MQA4 119 aa4.17□□□□□ -1.74
Shh-201ENSMUST00000002708 Gm10153A0A1B0GRL1 320 aa4.17□□□□□ -1.74
Shh-201ENSMUST00000002708 Mt3P28184 68 aa4.09□□□□□ -1.75
Shh-201ENSMUST00000002708 Gm39115A0A1B0GSH7 232 aa4.06□□□□□ -1.76
Shh-201ENSMUST00000002708 Hmcn1D3YXG0 5634 aa4.02□□□□□ -1.77
Shh-201ENSMUST00000002708 Kmt2dQ6PDK2 5588 aa4.02□□□□□ -1.77
Shh-201ENSMUST00000002708 Gm11554B1AQB2 190 aa4□□□□□ -1.77
Shh-201ENSMUST00000002708 Gm2431E9Q8S1 172 aa3.92□□□□□ -1.78
Shh-201ENSMUST00000002708 Gm11567Q9D141 195 aa3.91□□□□□ -1.78
Shh-201ENSMUST00000002708 Gm4553A0A1B0GSA9 284 aa3.89□□□□□ -1.79
Shh-201ENSMUST00000002708 Gm45337A0A1B0GS71 263 aa3.89□□□□□ -1.79
Shh-201ENSMUST00000002708 Gm11559Q9D3H7 191 aa3.89□□□□□ -1.79
Shh-201ENSMUST00000002708 Gm29735A0A1B0GT06 219 aa3.87□□□□□ -1.79
Shh-201ENSMUST00000002708 Eppk1Q8R0W0 6548 aa3.87□□□□□ -1.79
Shh-201ENSMUST00000002708 Muc19Q6PZE0 7524 aa3.82□□□□□ -1.8
Shh-201ENSMUST00000002708 Gm40460A0A1B0GR10 244 aa3.76□□□□□ -1.81
Shh-201ENSMUST00000002708 Gm7579A0A1B0GRJ4 243 aa3.76□□□□□ -1.81
Shh-201ENSMUST00000002708 Krtap5-5Q2TA51 241 aa3.76□□□□□ -1.81
Shh-201ENSMUST00000002708 Krtap5-4Q62220 223 aa3.76□□□□□ -1.81
Shh-201ENSMUST00000002708 Gpr98Q8VHN7 6298 aaKnown RBP3.72□□□□□ -1.81
Shh-201ENSMUST00000002708 Gm11639A0A1D5RLM8 5808 aa3.62□□□□□ -1.83
Shh-201ENSMUST00000002708 1110025L11RikO09048 78 aa3.56□□□□□ -1.84
Shh-201ENSMUST00000002708 Krtap6-5Q925H3 78 aa3.56□□□□□ -1.84
Shh-201ENSMUST00000002708 DstQ91ZU6 7393 aaKnown RBP3.48□□□□□ -1.85
Shh-201ENSMUST00000002708 AhnakE9Q616 5656 aaKnown RBP3.26□□□□□ -1.89
Shh-201ENSMUST00000002708 Sprr2bO70554 98 aa3.18□□□□□ -1.9
Shh-201ENSMUST00000002708 Gm10229O08631 77 aa3.15□□□□□ -1.91
Shh-201ENSMUST00000002708 NebE9Q1W3 7152 aa3.14□□□□□ -1.91
Shh-201ENSMUST00000002708 Krtap21-1Q925H4 128 aa2.93□□□□□ -1.94
Shh-201ENSMUST00000002708 Phgr1Q8K0G7 91 aa2.92□□□□□ -1.94
Shh-201ENSMUST00000002708 Krtap5-1Q64507 230 aa2.76□□□□□ -1.97
Shh-201ENSMUST00000002708 Gm4559A4IF42 199 aa2.71□□□□□ -1.98
Shh-201ENSMUST00000002708 Krtap6-2O08884 159 aa2.65□□□□□ -1.99
Retrieved 80 of 22,080 RNA–protein pairs in 66.4 ms