RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 EPB41L4AQ9HCS5 686 aaPredicted RBP1.64□□□□□ -2.15
VPS35-212ENST00000640313 CACNA2D2Q9NY47 1150 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 SEPT3Q9UH03 358 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 YBX2Q9Y2T7 364 aaKnown RBP1.64□□□□□ -2.15
VPS35-212ENST00000640313 IRAK3Q9Y616 596 aa1.64□□□□□ -2.15
VPS35-212ENST00000640313 FITM1A5D6W6 292 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 C1QTNF3-AMACRE9PGA6 284 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 HRKO00198 91 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 FANCGO15287 622 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 LRIG2O94898 1065 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 SLITRK5O94991 958 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 FSHBP01225 129 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 NPR3P17342 541 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 PI3P19957 117 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 MAGEA10P43363 369 aaPredicted RBP1.63□□□□□ -2.15
VPS35-212ENST00000640313 FAAP100Q0VG06 881 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 RTP5Q14D33 572 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 CDCA8Q53HL2 280 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 PRPF40BQ6NWY9 871 aaKnown RBP1.63□□□□□ -2.15
VPS35-212ENST00000640313 OXR1Q8N573 874 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 LINC01356Q8N9X3 169 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 CLP1Q92989 425 aaKnown RBP1.63□□□□□ -2.15
VPS35-212ENST00000640313 COX4I2Q96KJ9 171 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 BDH2Q9BUT1 245 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 ADAM7Q9H2U9 754 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 C19orf44Q9H6X5 657 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 ZSWIM5Q9P217 1185 aa1.63□□□□□ -2.15
VPS35-212ENST00000640313 MBD1Q9UIS9 605 aaPredicted RBP1.63□□□□□ -2.15
VPS35-212ENST00000640313 K7ESM1 405 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 IRS4O14654 1257 aaPredicted RBP1.62□□□□□ -2.15
VPS35-212ENST00000640313 N4BP3O15049 544 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 PRICKLE3O43900 615 aaPredicted RBP1.62□□□□□ -2.15
VPS35-212ENST00000640313 GRIN3BO60391 1043 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 ZGLP1P0C6A0 271 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 MPSTP25325 297 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 ARNTP27540 789 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 CAP2P40123 477 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 KIR3DL1P43629 444 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 ADAM17P78536 824 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 FGD1P98174 961 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 CAP1Q01518 475 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 PPP2R3AQ06190 1150 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 ZNF827Q17R98 1081 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 GAB4Q2WGN9 574 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 TIGD5Q53EQ6 642 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 PPM1JQ5JR12 505 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 ZBTB37Q5TC79 503 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 CDC37L1Q7L3B6 337 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 ARMCX6Q7L4S7 300 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 UBE3DQ7Z6J8 389 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 PROSER2Q86WR7 435 aaPredicted RBP1.62□□□□□ -2.15
VPS35-212ENST00000640313 GJD3Q8N144 294 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 SYT8Q8NBV8 401 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 PIWIL2Q8TC59 973 aaKnown RBP1.62□□□□□ -2.15
VPS35-212ENST00000640313 STK32AQ8WU08 396 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 KCNB2Q92953 911 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 SHISA4Q96DD7 197 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 NECAB3Q96P71 396 aaPredicted RBP1.62□□□□□ -2.15
VPS35-212ENST00000640313 MRIQ9BWK5 157 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 C1QTNF3Q9BXJ4 246 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 EHD4Q9H223 541 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 ABCB6Q9NP58 842 aa1.62□□□□□ -2.15
VPS35-212ENST00000640313 TPX2Q9ULW0 747 aaKnown RBP1.62□□□□□ -2.15
VPS35-212ENST00000640313 TMEM238LA0A1B0GVL6 79 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 CYR61O00622 381 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 FZD6O60353 706 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 NEFLP07196 543 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 PDE6BP35913 854 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 ACVRL1P37023 503 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 ZNF157P51786 506 aaPredicted RBP1.61□□□□□ -2.15
VPS35-212ENST00000640313 SRPK2P78362 688 aaKnown RBP1.61□□□□□ -2.15
VPS35-212ENST00000640313 SRSF3P84103 164 aaKnown RBP1.61□□□□□ -2.15
VPS35-212ENST00000640313 TNK2Q07912 1038 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 ZNF252P-AS1Q0IIN9 211 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 VMACQ2NL98 169 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 TMEM164Q5U3C3 297 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 ZNF746Q6NUN9 644 aaPredicted RBP1.61□□□□□ -2.15
VPS35-212ENST00000640313 CNKSR3Q6P9H4 555 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 CREG2Q8IUH2 290 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 SPPL2CQ8IUH8 684 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 TMEFF1Q8IYR6 380 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 MFSD2AQ8NA29 543 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 TP53I13Q8NBR0 393 aaPredicted RBP1.61□□□□□ -2.15
VPS35-212ENST00000640313 ZNF507Q8TCN5 953 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 GPBAR1Q8TDU6 330 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 DHX38Q92620 1227 aaKnown RBP1.61□□□□□ -2.15
VPS35-212ENST00000640313 EMILIN2Q9BXX0 1053 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 CNTD2Q9H8S5 307 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 TMEM39AQ9NV64 488 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 SLAIN2Q9P270 581 aa1.61□□□□□ -2.15
VPS35-212ENST00000640313 ZNF777Q9ULD5 760 aaPredicted RBP1.61□□□□□ -2.15
VPS35-212ENST00000640313 OR14I1A6ND48 311 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 FAM13AO94988 1023 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 ATG7O95352 703 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 CBX7O95931 251 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 SLPIP03973 132 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 NME2P22392 152 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 CYP7A1P22680 504 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 GDF5P43026 501 aa1.6□□□□□ -2.15
VPS35-212ENST00000640313 EPHB3P54753 998 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms