RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 PCDHA7Q9UN72 937 aa5.6□□□□□ -1.51
VPS13D-214ENST00000620676 BTKQ06187 659 aa5.6□□□□□ -1.51
VPS13D-214ENST00000620676 NLRP3Q96P20 1036 aa5.6□□□□□ -1.51
VPS13D-214ENST00000620676 ESYT3A0FGR9 886 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 PSDA5PKW4 1024 aaPredicted RBP5.59□□□□□ -1.51
VPS13D-214ENST00000620676 KCNJ18B7U540 433 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 MAP3K7O43318 606 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 MOCS3O95396 460 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 TNNC1P63316 161 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 SCRN1Q12765 414 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 LAMB3Q13751 1172 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 KCNJ12Q14500 433 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 EVI5O60447 810 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 TMEM154Q6P9G4 183 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 SLC30A9Q6PML9 568 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 STRN4Q9NRL3 753 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 KIAA1107Q9UPP5 1409 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 CASQ2O14958 399 aaPredicted RBP5.59□□□□□ -1.51
VPS13D-214ENST00000620676 RAPGEF1Q13905 1077 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.59□□□□□ -1.513e-7■■■■□ 24.5
VPS13D-214ENST00000620676 SMYD3Q9H7B4 428 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 SASH3O75995 380 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 FTCDO95954 541 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 SH2D4BQ5SQS7 431 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 ARFGAP2Q8N6H7 521 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 NACAP1Q9BZK3 213 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 SLC52A1Q9NWF4 448 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 PARD3Q8TEW0 1356 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 SPECC1L-ADORA2AF8WAN1 911 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 PPP1R12AO14974 1030 aaPredicted RBP5.59□□□□□ -1.51
VPS13D-214ENST00000620676 TMOD1P28289 359 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 HEATR3Q7Z4Q2 680 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 WDR75Q8IWA0 830 aaKnown RBP5.59□□□□□ -1.51
VPS13D-214ENST00000620676 PDLIM2Q96JY6 352 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 STMN4Q9H169 189 aaPredicted RBP5.59□□□□□ -1.51
VPS13D-214ENST00000620676 SLC40A1Q9NP59 571 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 CADPSQ9ULU8 1353 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 RAD23BP54727 409 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 NBPF20Q3BBV1 942 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 CCDC13Q8IYE1 715 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 LMBR1Q8WVP7 490 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 ZNF692Q9BU19 519 aaPredicted RBP5.59□□□□□ -1.51
VPS13D-214ENST00000620676 DNAJC17Q9NVM6 304 aaKnown RBP5.59□□□□□ -1.51
VPS13D-214ENST00000620676 NPHP3Q7Z494 1330 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 VAMP4O75379 141 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 CTCFP49711 727 aaPredicted RBP5.59□□□□□ -1.51
VPS13D-214ENST00000620676 WASF1Q92558 559 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 NME9Q86XW9 330 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 TMTC1Q8IUR5 882 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 NUDCD3Q8IVD9 361 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 NLRP2Q9NX02 1062 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 GNAT2P19087 354 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 STX2P32856 288 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 TBC1D8BQ0IIM8 1120 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 MAP7D3Q8IWC1 876 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 TSGA10Q9BZW7 698 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 AKAP2Q9Y2D5 859 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 MAGEA1P43355 309 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 VSNL1P62760 191 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 C16orf87Q6PH81 154 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 SIX5Q8N196 739 aa5.59□□□□□ -1.51
VPS13D-214ENST00000620676 EDC3Q96F86 508 aaKnown RBP5.59□□□□□ -1.51
VPS13D-214ENST00000620676 PLCB3Q01970 1234 aa5.59□□□□□ -1.52
VPS13D-214ENST00000620676 SLFNL1Q499Z3 407 aa5.59□□□□□ -1.52
VPS13D-214ENST00000620676 NBPF6Q5VWK0 638 aa5.59□□□□□ -1.52
VPS13D-214ENST00000620676 NBPF5PQ86XG9 351 aaPredicted RBP5.59□□□□□ -1.52
VPS13D-214ENST00000620676 NBPF4Q96M43 638 aa5.59□□□□□ -1.52
VPS13D-214ENST00000620676 MTRQ99707 1265 aa5.59□□□□□ -1.52
VPS13D-214ENST00000620676 KIAA1468Q9P260 1216 aa5.59□□□□□ -1.52
VPS13D-214ENST00000620676 ZMYM3Q14202 1370 aa5.59□□□□□ -1.52
VPS13D-214ENST00000620676 CTNND1O60716 968 aaKnown RBP5.59□□□□□ -1.52
VPS13D-214ENST00000620676 NOL3O60936 208 aaKnown RBP5.59□□□□□ -1.52
VPS13D-214ENST00000620676 NLRP14Q86W24 1093 aa5.59□□□□□ -1.52
VPS13D-214ENST00000620676 NUDCD1Q96RS6 583 aa5.59□□□□□ -1.52
VPS13D-214ENST00000620676 SMC6Q96SB8 1091 aa5.59□□□□□ -1.52
VPS13D-214ENST00000620676 PNKPQ96T60 521 aa5.59□□□□□ -1.52
VPS13D-214ENST00000620676 TTC36A6NLP5 189 aa5.59□□□□□ -1.52
VPS13D-214ENST00000620676 ADAMTS2O95450 1211 aa5.59□□□□□ -1.52
VPS13D-214ENST00000620676 TBC1D8O95759 1140 aa5.59□□□□□ -1.52
VPS13D-214ENST00000620676 KRI1Q8N9T8 703 aaKnown RBP5.59□□□□□ -1.52
VPS13D-214ENST00000620676 CFAP61Q8NHU2 1237 aa5.59□□□□□ -1.52
VPS13D-214ENST00000620676 AZI2Q9H6S1 392 aa5.59□□□□□ -1.52
VPS13D-214ENST00000620676 PFKFB1P16118 471 aa5.58□□□□□ -1.52
VPS13D-214ENST00000620676 GPTP24298 496 aa5.58□□□□□ -1.52
VPS13D-214ENST00000620676 HSPA1LP34931 641 aa5.58□□□□□ -1.52
VPS13D-214ENST00000620676 SEC24CP53992 1094 aa5.58□□□□□ -1.52
VPS13D-214ENST00000620676 NUTM2AQ8IVF1 878 aaPredicted RBP5.58□□□□□ -1.52
VPS13D-214ENST00000620676 PLAAQ9Y263 795 aa5.58□□□□□ -1.52
VPS13D-214ENST00000620676 ATP8A1Q9Y2Q0 1164 aa5.58□□□□□ -1.52
VPS13D-214ENST00000620676 DHX9Q08211 1270 aaKnown RBP5.58□□□□□ -1.52
VPS13D-214ENST00000620676 CCDC57Q2TAC2 916 aa5.58□□□□□ -1.52
VPS13D-214ENST00000620676 ZMAT2Q96NC0 199 aaKnown RBP5.58□□□□□ -1.52
VPS13D-214ENST00000620676 SIKE1Q9BRV8 207 aa5.58□□□□□ -1.52
VPS13D-214ENST00000620676 NLRC4Q9NPP4 1024 aa5.58□□□□□ -1.52
VPS13D-214ENST00000620676 TRIM10Q9UDY6 481 aa5.58□□□□□ -1.52
VPS13D-214ENST00000620676 PFKFB2O60825 505 aa5.58□□□□□ -1.52
VPS13D-214ENST00000620676 ZNF76P36508 570 aa5.58□□□□□ -1.52
VPS13D-214ENST00000620676 CFAP221Q4G0U5 840 aa5.58□□□□□ -1.52
VPS13D-214ENST00000620676 FYB2Q5VWT5 728 aa5.58□□□□□ -1.52
VPS13D-214ENST00000620676 PAF1Q8N7H5 531 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms