RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 TATDN1Q6P1N9 297 aa23.11■■□□□ 1.29
CCDC28A-203ENST00000617445 CRNKL1Q9BZJ0 848 aaKnown RBP23.11■■□□□ 1.29
CCDC28A-203ENST00000617445 TMOD4Q9NZQ9 345 aa23.11■■□□□ 1.29
CCDC28A-203ENST00000617445 GRK4P32298 578 aa23.1■■□□□ 1.29
CCDC28A-203ENST00000617445 FAM110CQ1W6H9 321 aa23.1■■□□□ 1.29
CCDC28A-203ENST00000617445 SLC4A8Q2Y0W8 1093 aa23.1■■□□□ 1.29
CCDC28A-203ENST00000617445 SH3TC2Q8TF17 1288 aa23.1■■□□□ 1.29
CCDC28A-203ENST00000617445 PAG1Q9NWQ8 432 aa23.1■■□□□ 1.29
CCDC28A-203ENST00000617445 TAOK2Q9UL54 1235 aa23.1■■□□□ 1.29
CCDC28A-203ENST00000617445 ZBTB21Q9ULJ3 1066 aa23.1■■□□□ 1.29
CCDC28A-203ENST00000617445 USP17L10C9JJH3 530 aa23.09■■□□□ 1.29
CCDC28A-203ENST00000617445 HOXA7P31268 230 aaPredicted RBP23.09■■□□□ 1.29
CCDC28A-203ENST00000617445 PRPF38BQ5VTL8 546 aaKnown RBP23.09■■□□□ 1.29
CCDC28A-203ENST00000617445 HAUS7Q99871 368 aa23.09■■□□□ 1.29
CCDC28A-203ENST00000617445 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.09■■□□□ 1.29
CCDC28A-203ENST00000617445 ZNF532Q9HCE3 1301 aa23.08■■□□□ 1.29
CCDC28A-203ENST00000617445 GDF11O95390 407 aa23.08■■□□□ 1.29
CCDC28A-203ENST00000617445 EN2P19622 333 aaPredicted RBP23.08■■□□□ 1.29
CCDC28A-203ENST00000617445 MTMR2Q13614 643 aa23.08■■□□□ 1.29
CCDC28A-203ENST00000617445 ANKRD13CQ8N6S4 541 aa23.08■■□□□ 1.29
CCDC28A-203ENST00000617445 SLAIN1Q8ND83 568 aa23.08■■□□□ 1.29
CCDC28A-203ENST00000617445 ASCC2Q9H1I8 757 aaPredicted RBP23.08■■□□□ 1.29
CCDC28A-203ENST00000617445 BOLA2Q9H3K6 86 aa23.08■■□□□ 1.29
CCDC28A-203ENST00000617445 TCRBV5S4A2TA0A5A2 114 aa23.07■■□□□ 1.28
CCDC28A-203ENST00000617445 TNPO2O14787 897 aaKnown RBP23.07■■□□□ 1.28
CCDC28A-203ENST00000617445 ECM2O94769 699 aaPredicted RBP23.07■■□□□ 1.28
CCDC28A-203ENST00000617445 POLR3DP05423 398 aaPredicted RBP23.07■■□□□ 1.28
CCDC28A-203ENST00000617445 JAG1P78504 1218 aa23.07■■□□□ 1.28
CCDC28A-203ENST00000617445 PRKCZQ05513 592 aa23.07■■□□□ 1.28
CCDC28A-203ENST00000617445 COA7Q96BR5 231 aa23.07■■□□□ 1.28
CCDC28A-203ENST00000617445 BCL11AQ9H165 835 aa23.07■■□□□ 1.28
CCDC28A-203ENST00000617445 DOCK3Q8IZD9 2030 aa23.07■■□□□ 1.28
CCDC28A-203ENST00000617445 UBXN2AP68543 259 aa23.06■■□□□ 1.28
CCDC28A-203ENST00000617445 IRX3P78415 501 aaPredicted RBP23.06■■□□□ 1.28
CCDC28A-203ENST00000617445 IRF5Q13568 498 aa23.06■■□□□ 1.28
CCDC28A-203ENST00000617445 CERKLQ49MI3 558 aaPredicted RBP23.06■■□□□ 1.28
CCDC28A-203ENST00000617445 DCTPP1Q9H773 170 aa23.06■■□□□ 1.28
CCDC28A-203ENST00000617445 GH2P01242 217 aa23.05■■□□□ 1.28
CCDC28A-203ENST00000617445 ADD2P35612 726 aa23.05■■□□□ 1.28
CCDC28A-203ENST00000617445 USP17L2Q6R6M4 530 aa23.05■■□□□ 1.28
CCDC28A-203ENST00000617445 NKX2-3Q8TAU0 364 aa23.05■■□□□ 1.28
CCDC28A-203ENST00000617445 PXYLP1Q8TE99 480 aa23.05■■□□□ 1.28
CCDC28A-203ENST00000617445 CABP5Q9NP86 173 aa23.05■■□□□ 1.28
CCDC28A-203ENST00000617445 FLT3LGP49771 235 aa23.04■■□□□ 1.28
CCDC28A-203ENST00000617445 PLCD1P51178 756 aa23.04■■□□□ 1.28
CCDC28A-203ENST00000617445 ZSCAN25Q6NSZ9 544 aa23.04■■□□□ 1.28
CCDC28A-203ENST00000617445 GTF3C2Q8WUA4 911 aaPredicted RBP23.04■■□□□ 1.28
CCDC28A-203ENST00000617445 ATP8A2Q9NTI2 1148 aa23.04■■□□□ 1.28
CCDC28A-203ENST00000617445 MCM9Q9NXL9 1143 aa23.04■■□□□ 1.28
CCDC28A-203ENST00000617445 MORF4L1Q9UBU8 362 aa23.04■■□□□ 1.28
CCDC28A-203ENST00000617445 BIN2Q9UBW5 565 aaPredicted RBP23.04■■□□□ 1.28
CCDC28A-203ENST00000617445 NAV1Q8NEY1 1877 aa23.03■■□□□ 1.28
CCDC28A-203ENST00000617445 CAPN2P17655 700 aa23.03■■□□□ 1.28
CCDC28A-203ENST00000617445 USP14P54578 494 aa23.03■■□□□ 1.28
CCDC28A-203ENST00000617445 UBE3CQ15386 1083 aa23.03■■□□□ 1.28
CCDC28A-203ENST00000617445 ABCB5Q2M3G0 1257 aa23.03■■□□□ 1.28
CCDC28A-203ENST00000617445 EDC3Q96F86 508 aaKnown RBP23.03■■□□□ 1.28
CCDC28A-203ENST00000617445 ECHDC1Q9NTX5 307 aa23.03■■□□□ 1.28
CCDC28A-203ENST00000617445 GABRQQ9UN88 632 aa23.03■■□□□ 1.28
CCDC28A-203ENST00000617445 DDX60LQ5H9U9 1706 aaKnown RBP23.02■■□□□ 1.28
CCDC28A-203ENST00000617445 MYH7P12883 1935 aa23.02■■□□□ 1.28
CCDC28A-203ENST00000617445 ADCY3O60266 1144 aa23.02■■□□□ 1.28
CCDC28A-203ENST00000617445 GABPAQ06546 454 aa23.02■■□□□ 1.28
CCDC28A-203ENST00000617445 SHROOM1Q2M3G4 852 aaPredicted RBP23.02■■□□□ 1.28
CCDC28A-203ENST00000617445 LCORLQ8N3X6 602 aa23.02■■□□□ 1.28
CCDC28A-203ENST00000617445 GPATCH3Q96I76 525 aa23.02■■□□□ 1.28
CCDC28A-203ENST00000617445 DCP1AQ9NPI6 582 aaPredicted RBP23.02■■□□□ 1.28
CCDC28A-203ENST00000617445 BRCA2P51587 3418 aa23.01■■□□□ 1.27
CCDC28A-203ENST00000617445 SMARCA5O60264 1052 aaPredicted RBP23.01■■□□□ 1.27
CCDC28A-203ENST00000617445 MYCP01106 439 aaPredicted RBP23.01■■□□□ 1.27
CCDC28A-203ENST00000617445 SHMT1P34896 483 aa23.01■■□□□ 1.27
CCDC28A-203ENST00000617445 C12orf42Q96LP6 360 aa23.01■■□□□ 1.27
CCDC28A-203ENST00000617445 P2RX7Q99572 595 aaKnown RBP23.01■■□□□ 1.27
CCDC28A-203ENST00000617445 EMILIN3Q9NT22 766 aa23.01■■□□□ 1.27
CCDC28A-203ENST00000617445 SWAP70Q9UH65 585 aa23.01■■□□□ 1.27
CCDC28A-203ENST00000617445 GJB1P08034 283 aa23■■□□□ 1.27
CCDC28A-203ENST00000617445 HERVK_113P62684 666 aa23■■□□□ 1.27
CCDC28A-203ENST00000617445 RAB3GAP1Q15042 981 aa23■■□□□ 1.27
CCDC28A-203ENST00000617445 MTFR1Q15390 333 aa23■■□□□ 1.27
CCDC28A-203ENST00000617445 SDR42E1Q8WUS8 393 aa23■■□□□ 1.27
CCDC28A-203ENST00000617445 DDRGK1Q96HY6 314 aa23■■□□□ 1.27
CCDC28A-203ENST00000617445 FEZ1Q99689 392 aa23■■□□□ 1.27
CCDC28A-203ENST00000617445 KIAA1683Q9H0B3 1180 aa23■■□□□ 1.27
CCDC28A-203ENST00000617445 MKI67P46013 3256 aaKnown RBP22.99■■□□□ 1.27
CCDC28A-203ENST00000617445 MBD4O95243 580 aa22.99■■□□□ 1.27
CCDC28A-203ENST00000617445 CCL5P13501 91 aa22.99■■□□□ 1.27
CCDC28A-203ENST00000617445 AMOTL1Q8IY63 956 aa22.99■■□□□ 1.27
CCDC28A-203ENST00000617445 GPRC5AQ8NFJ5 357 aa22.99■■□□□ 1.27
CCDC28A-203ENST00000617445 RNF208Q9H0X6 261 aa22.99■■□□□ 1.27
CCDC28A-203ENST00000617445 ARMT1Q9H993 441 aa22.99■■□□□ 1.27
CCDC28A-203ENST00000617445 USP17L15C9J2P7 530 aa22.98■■□□□ 1.27
CCDC28A-203ENST00000617445 USP17L13C9JLJ4 530 aa22.98■■□□□ 1.27
CCDC28A-203ENST00000617445 USP17L11C9JVI0 530 aa22.98■■□□□ 1.27
CCDC28A-203ENST00000617445 USP17L18D6R9N7 530 aa22.98■■□□□ 1.27
CCDC28A-203ENST00000617445 USP17L22D6RA61 530 aa22.98■■□□□ 1.27
CCDC28A-203ENST00000617445 USP17L17D6RBQ6 530 aa22.98■■□□□ 1.27
CCDC28A-203ENST00000617445 USP17L19D6RCP7 530 aa22.98■■□□□ 1.27
CCDC28A-203ENST00000617445 USP17L20D6RJB6 530 aa22.98■■□□□ 1.27
CCDC28A-203ENST00000617445 GJA8P48165 433 aa22.98■■□□□ 1.27
CCDC28A-203ENST00000617445 USP17L24Q0WX57 530 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms