RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 GABPAQ06546 454 aa23.49■■□□□ 1.35
SHKBP1-214ENST00000597396 RRP1BQ14684 758 aaKnown RBP23.49■■□□□ 1.35
SHKBP1-214ENST00000597396 SBK1Q52WX2 424 aa23.49■■□□□ 1.35
SHKBP1-214ENST00000597396 ZNF589Q86UQ0 364 aaPredicted RBP23.49■■□□□ 1.35
SHKBP1-214ENST00000597396 SWAP70Q9UH65 585 aa23.49■■□□□ 1.35
SHKBP1-214ENST00000597396 PTPRAP18433 802 aa23.48■■□□□ 1.35
SHKBP1-214ENST00000597396 CERKLQ49MI3 558 aaPredicted RBP23.48■■□□□ 1.35
SHKBP1-214ENST00000597396 DYNLL2Q96FJ2 89 aa23.48■■□□□ 1.35
SHKBP1-214ENST00000597396 TAOK2Q9UL54 1235 aa23.48■■□□□ 1.35
SHKBP1-214ENST00000597396 ZHX2Q9Y6X8 837 aa23.48■■□□□ 1.35
SHKBP1-214ENST00000597396 IRF6O14896 467 aa23.47■■□□□ 1.35
SHKBP1-214ENST00000597396 ASNSP08243 561 aa23.47■■□□□ 1.35
SHKBP1-214ENST00000597396 SHMT1P34896 483 aa23.47■■□□□ 1.35
SHKBP1-214ENST00000597396 GTF2A2P52657 109 aa23.47■■□□□ 1.35
SHKBP1-214ENST00000597396 VPS53Q5VIR6 699 aa23.47■■□□□ 1.35
SHKBP1-214ENST00000597396 TATDN1Q6P1N9 297 aa23.47■■□□□ 1.35
SHKBP1-214ENST00000597396 RUFY2Q8WXA3 655 aa23.47■■□□□ 1.35
SHKBP1-214ENST00000597396 GINM1Q9NU53 330 aa23.47■■□□□ 1.35
SHKBP1-214ENST00000597396 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.47■■□□□ 1.35
SHKBP1-214ENST00000597396 INHBEP58166 350 aa23.46■■□□□ 1.35
SHKBP1-214ENST00000597396 SNAPC2Q13487 334 aa23.46■■□□□ 1.35
SHKBP1-214ENST00000597396 BMP2KLQ5H9B9 411 aa23.46■■□□□ 1.35
SHKBP1-214ENST00000597396 SLC44A5Q8NCS7 719 aa23.46■■□□□ 1.35
SHKBP1-214ENST00000597396 ZBTB21Q9ULJ3 1066 aa23.46■■□□□ 1.35
SHKBP1-214ENST00000597396 CCL15-CCL14A0A0B4J2E2 113 aa23.45■■□□□ 1.34
SHKBP1-214ENST00000597396 USP17L5A8MUK1 530 aa23.45■■□□□ 1.34
SHKBP1-214ENST00000597396 SMIM22K7EJ46 135 aa23.45■■□□□ 1.34
SHKBP1-214ENST00000597396 HSPD1P10809 573 aaKnown RBP23.45■■□□□ 1.34
SHKBP1-214ENST00000597396 CHMLP26374 656 aa23.45■■□□□ 1.34
SHKBP1-214ENST00000597396 TM4SF4P48230 202 aa23.45■■□□□ 1.34
SHKBP1-214ENST00000597396 CDK8P49336 464 aa23.45■■□□□ 1.34
SHKBP1-214ENST00000597396 CCL15Q16663 113 aa23.45■■□□□ 1.34
SHKBP1-214ENST00000597396 ABCB5Q2M3G0 1257 aa23.45■■□□□ 1.34
SHKBP1-214ENST00000597396 C16orf86Q6ZW13 317 aa23.45■■□□□ 1.34
SHKBP1-214ENST00000597396 CCDC84Q86UT8 332 aaPredicted RBP23.45■■□□□ 1.34
SHKBP1-214ENST00000597396 STK11IPQ8N1F8 1099 aa23.45■■□□□ 1.34
SHKBP1-214ENST00000597396 CABP5Q9NP86 173 aa23.45■■□□□ 1.34
SHKBP1-214ENST00000597396 RAD50Q92878 1312 aa23.44■■□□□ 1.34
SHKBP1-214ENST00000597396 FOXP2O15409 715 aa23.44■■□□□ 1.34
SHKBP1-214ENST00000597396 GH2P01242 217 aa23.44■■□□□ 1.34
SHKBP1-214ENST00000597396 CETPP11597 493 aa23.44■■□□□ 1.34
SHKBP1-214ENST00000597396 MS4A4AQ96JQ5 239 aa23.44■■□□□ 1.34
SHKBP1-214ENST00000597396 TBC1D2Q9BYX2 928 aa23.44■■□□□ 1.34
SHKBP1-214ENST00000597396 AS3MTQ9HBK9 375 aa23.44■■□□□ 1.34
SHKBP1-214ENST00000597396 ROBO3Q96MS0 1386 aa23.43■■□□□ 1.34
SHKBP1-214ENST00000597396 LAMA4Q16363 1823 aa23.43■■□□□ 1.34
SHKBP1-214ENST00000597396 MPHOSPH10O00566 681 aaKnown RBP23.43■■□□□ 1.34
SHKBP1-214ENST00000597396 SLC3A2P08195 630 aaKnown RBP23.43■■□□□ 1.34
SHKBP1-214ENST00000597396 JAG1P78504 1218 aa23.43■■□□□ 1.34
SHKBP1-214ENST00000597396 ALX1Q15699 326 aa23.43■■□□□ 1.34
SHKBP1-214ENST00000597396 SHROOM1Q2M3G4 852 aaPredicted RBP23.43■■□□□ 1.34
SHKBP1-214ENST00000597396 KCNH4Q9UQ05 1017 aa23.43■■□□□ 1.34
SHKBP1-214ENST00000597396 CCDC85CA6NKD9 419 aa23.42■■□□□ 1.34
SHKBP1-214ENST00000597396 CXCL11O14625 94 aa23.42■■□□□ 1.34
SHKBP1-214ENST00000597396 PPARAQ07869 468 aa23.42■■□□□ 1.34
SHKBP1-214ENST00000597396 OTUD7BQ6GQQ9 843 aa23.42■■□□□ 1.34
SHKBP1-214ENST00000597396 BRI3BPQ8WY22 251 aa23.42■■□□□ 1.34
SHKBP1-214ENST00000597396 MKNK2Q9HBH9 465 aa23.42■■□□□ 1.34
SHKBP1-214ENST00000597396 AFG3L2Q9Y4W6 797 aa23.42■■□□□ 1.34
SHKBP1-214ENST00000597396 TESPA1A2RU30 521 aaPredicted RBP23.41■■□□□ 1.34
SHKBP1-214ENST00000597396 TRIM75PA6NK02 468 aa23.41■■□□□ 1.34
SHKBP1-214ENST00000597396 RAB3GAP1Q15042 981 aa23.41■■□□□ 1.34
SHKBP1-214ENST00000597396 IFNL1Q8IU54 200 aa23.41■■□□□ 1.34
SHKBP1-214ENST00000597396 ZNF280CQ8ND82 737 aa23.41■■□□□ 1.34
SHKBP1-214ENST00000597396 CCDC17Q96LX7 622 aa23.41■■□□□ 1.34
SHKBP1-214ENST00000597396 ZNF287Q9HBT7 754 aa23.41■■□□□ 1.34
SHKBP1-214ENST00000597396 RNF186Q9NXI6 227 aa23.41■■□□□ 1.34
SHKBP1-214ENST00000597396 ZMYM6O95789 1325 aa23.4■■□□□ 1.34
SHKBP1-214ENST00000597396 TRPA1O75762 1119 aa23.4■■□□□ 1.34
SHKBP1-214ENST00000597396 FGAP02671 866 aa23.4■■□□□ 1.34
SHKBP1-214ENST00000597396 SPP2Q13103 211 aa23.4■■□□□ 1.34
SHKBP1-214ENST00000597396 LOC285556D6RIA3 1793 aa23.4■■□□□ 1.34
SHKBP1-214ENST00000597396 IGF2BP3O00425 579 aaKnown RBP eCLIP23.39■■□□□ 1.33
SHKBP1-214ENST00000597396 ALDH1A1P00352 501 aa23.39■■□□□ 1.33
SHKBP1-214ENST00000597396 AKR1B1P15121 316 aa23.39■■□□□ 1.33
SHKBP1-214ENST00000597396 PDE4BQ07343 736 aa23.39■■□□□ 1.33
SHKBP1-214ENST00000597396 WDR18Q9BV38 432 aa23.39■■□□□ 1.33
SHKBP1-214ENST00000597396 DSCC1Q9BVC3 393 aa23.39■■□□□ 1.33
SHKBP1-214ENST00000597396 MCOLN1Q9GZU1 580 aa23.39■■□□□ 1.33
SHKBP1-214ENST00000597396 IL25Q9H293 177 aa23.39■■□□□ 1.33
SHKBP1-214ENST00000597396 SAGE1Q9NXZ1 904 aa23.39■■□□□ 1.33
SHKBP1-214ENST00000597396 CASP8AP2Q9UKL3 1982 aa23.38■■□□□ 1.33
SHKBP1-214ENST00000597396 GREB1LQ9C091 1923 aaPredicted RBP23.38■■□□□ 1.33
SHKBP1-214ENST00000597396 A0A0G2JLL6 359 aaPredicted RBP23.38■■□□□ 1.33
SHKBP1-214ENST00000597396 CTDSPL2Q05D32 466 aa23.38■■□□□ 1.33
SHKBP1-214ENST00000597396 SEPT2Q15019 361 aa23.38■■□□□ 1.33
SHKBP1-214ENST00000597396 GADL1Q6ZQY3 521 aa23.38■■□□□ 1.33
SHKBP1-214ENST00000597396 TMEM179Q6ZVK1 233 aa23.38■■□□□ 1.33
SHKBP1-214ENST00000597396 PRRT2Q7Z6L0 340 aaPredicted RBP23.38■■□□□ 1.33
SHKBP1-214ENST00000597396 PTPN18Q99952 460 aa23.38■■□□□ 1.33
SHKBP1-214ENST00000597396 MYH4Q9Y623 1939 aa23.37■■□□□ 1.33
SHKBP1-214ENST00000597396 SGSM2O43147 1006 aa23.37■■□□□ 1.33
SHKBP1-214ENST00000597396 DGKZQ13574 1117 aa23.37■■□□□ 1.33
SHKBP1-214ENST00000597396 FASTKD5Q7L8L6 764 aaKnown RBP23.37■■□□□ 1.33
SHKBP1-214ENST00000597396 ZNF444Q8N0Y2 327 aaPredicted RBP23.37■■□□□ 1.33
SHKBP1-214ENST00000597396 BTBD19C9JJ37 291 aa23.36■■□□□ 1.33
SHKBP1-214ENST00000597396 PRDM1O75626 825 aa23.36■■□□□ 1.33
SHKBP1-214ENST00000597396 RASA1P20936 1047 aa23.36■■□□□ 1.33
SHKBP1-214ENST00000597396 GUCY1A2P33402 732 aa23.36■■□□□ 1.33
SHKBP1-214ENST00000597396 CASC1Q6TDU7 716 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms