RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 EFCAB8A8MWE9 144 aa17.37■□□□□ 0.37
UPF1-204ENST00000596842 AKR1B15C9JRZ8 316 aaPredicted RBP17.37■□□□□ 0.37
UPF1-204ENST00000596842 NOM1Q5C9Z4 860 aaKnown RBP17.37■□□□□ 0.37
UPF1-204ENST00000596842 GPIHBP1Q8IV16 184 aa17.37■□□□□ 0.37
UPF1-204ENST00000596842 FMNL1O95466 1100 aaPredicted RBP17.36■□□□□ 0.37
UPF1-204ENST00000596842 CCDC175P0C221 793 aa17.36■□□□□ 0.37
UPF1-204ENST00000596842 SLC5A1P13866 664 aa17.36■□□□□ 0.37
UPF1-204ENST00000596842 DZIP3Q86Y13 1208 aaKnown RBP17.36■□□□□ 0.37
UPF1-204ENST00000596842 PLIN2Q99541 437 aa17.36■□□□□ 0.37
UPF1-204ENST00000596842 LMAN1P49257 510 aa17.36■□□□□ 0.37
UPF1-204ENST00000596842 RILPL1Q5EBL4 403 aa17.36■□□□□ 0.37
UPF1-204ENST00000596842 ZNF654Q8IZM8 581 aa17.36■□□□□ 0.37
UPF1-204ENST00000596842 SASH3O75995 380 aa17.36■□□□□ 0.37
UPF1-204ENST00000596842 SMC1AQ14683 1233 aaKnown RBP17.36■□□□□ 0.37
UPF1-204ENST00000596842 FBXO2Q9UK22 296 aaPredicted RBP17.36■□□□□ 0.37
UPF1-204ENST00000596842 SLIT3O75094 1523 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 TRIM75PA6NK02 468 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 DHX8Q14562 1220 aaKnown RBP17.35■□□□□ 0.37
UPF1-204ENST00000596842 PUM3Q15397 648 aaKnown RBP17.35■□□□□ 0.37
UPF1-204ENST00000596842 FANCBQ8NB91 859 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 ACRBPQ8NEB7 543 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 NUP88Q99567 741 aaPredicted RBP17.35■□□□□ 0.37
UPF1-204ENST00000596842 HINFPQ9BQA5 517 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 CTNND2Q9UQB3 1225 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 WDR17Q8IZU2 1322 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 GSG1L2A8MUP6 293 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 KIF5CO60282 957 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 CASP14P31944 242 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 CADPS2Q86UW7 1296 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 MLKLQ8NB16 471 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 CDC5LQ99459 802 aaKnown RBP17.35■□□□□ 0.37
UPF1-204ENST00000596842 KRT23Q9C075 422 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 MAP3K15Q6ZN16 1313 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 N4BP3O15049 544 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 CSF1RP07333 972 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 UQCRFS1P1P0C7P4 283 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 IFNAR1P17181 557 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 PTPREP23469 700 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 HNRNPH2P55795 449 aaKnown RBP17.35■□□□□ 0.37
UPF1-204ENST00000596842 FBXL16Q8N461 479 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 GOLGA6L1Q8N7Z2 621 aa17.35■□□□□ 0.37
UPF1-204ENST00000596842 SRRTQ9BXP5 876 aaKnown RBP17.35■□□□□ 0.37
UPF1-204ENST00000596842 FILIP1LQ4L180 1135 aa17.34■□□□□ 0.37
UPF1-204ENST00000596842 EARS2Q5JPH6 523 aaKnown RBP17.34■□□□□ 0.37
UPF1-204ENST00000596842 LPIN2Q92539 896 aa17.34■□□□□ 0.37
UPF1-204ENST00000596842 SYMPKQ92797 1274 aaKnown RBP17.34■□□□□ 0.37
UPF1-204ENST00000596842 TEX13AQ9BXU3 409 aaPredicted RBP17.34■□□□□ 0.37
UPF1-204ENST00000596842 ARFGEF2Q9Y6D5 1785 aa17.34■□□□□ 0.37
UPF1-204ENST00000596842 LOC102724159A0A0B4J2E5 919 aa17.34■□□□□ 0.37
UPF1-204ENST00000596842 WTIPA6NIX2 430 aaPredicted RBP17.34■□□□□ 0.37
UPF1-204ENST00000596842 STX10O60499 249 aa17.34■□□□□ 0.37
UPF1-204ENST00000596842 DEXIO95424 95 aa17.34■□□□□ 0.37
UPF1-204ENST00000596842 PWP2Q15269 919 aaKnown RBP17.34■□□□□ 0.37
UPF1-204ENST00000596842 SUGCTQ9HAC7 445 aa17.34■□□□□ 0.37
UPF1-204ENST00000596842 SYNRGQ9UMZ2 1314 aa17.34■□□□□ 0.37
UPF1-204ENST00000596842 RRAGBQ5VZM2 374 aa17.34■□□□□ 0.37
UPF1-204ENST00000596842 TMEM139Q8IV31 216 aa17.34■□□□□ 0.37
UPF1-204ENST00000596842 GOLGA1Q92805 767 aa17.34■□□□□ 0.37
UPF1-204ENST00000596842 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.34■□□□□ 0.37
UPF1-204ENST00000596842 TNKSO95271 1327 aa17.33■□□□□ 0.37
UPF1-204ENST00000596842 TPM1P09493 284 aa17.33■□□□□ 0.37
UPF1-204ENST00000596842 MCM7P33993 719 aa17.33■□□□□ 0.37
UPF1-204ENST00000596842 CC2D1AQ6P1N0 951 aaPredicted RBP17.33■□□□□ 0.37
UPF1-204ENST00000596842 CRACR2BQ8N4Y2 399 aaPredicted RBP17.33■□□□□ 0.37
UPF1-204ENST00000596842 XBP1P17861 261 aa17.33■□□□□ 0.36
UPF1-204ENST00000596842 CHMP4BP1P59074 171 aa17.33■□□□□ 0.36
UPF1-204ENST00000596842 RAD9BQ6WBX8 426 aa17.33■□□□□ 0.36
UPF1-204ENST00000596842 CNNM2Q9H8M5 875 aa17.33■□□□□ 0.36
UPF1-204ENST00000596842 TAB2Q9NYJ8 693 aa17.33■□□□□ 0.36
UPF1-204ENST00000596842 SPATA31A3Q5VYP0 1347 aa17.33■□□□□ 0.36
UPF1-204ENST00000596842 A0A087X0B3 334 aa17.33■□□□□ 0.36
UPF1-204ENST00000596842 PDE8AO60658 829 aa17.33■□□□□ 0.36
UPF1-204ENST00000596842 PLEKHA8P1O95397 391 aa17.33■□□□□ 0.36
UPF1-204ENST00000596842 CD44P16070 742 aaKnown RBP17.33■□□□□ 0.36
UPF1-204ENST00000596842 MED15Q96RN5 788 aa17.33■□□□□ 0.36
UPF1-204ENST00000596842 CEP131Q9UPN4 1083 aa17.33■□□□□ 0.36
UPF1-204ENST00000596842 CCDC196A0A1B0GTZ2 297 aa17.32■□□□□ 0.36
UPF1-204ENST00000596842 DRC1Q96MC2 740 aa17.32■□□□□ 0.36
UPF1-204ENST00000596842 GDAP1L1Q96MZ0 367 aa17.32■□□□□ 0.36
UPF1-204ENST00000596842 ABL1P00519 1130 aa17.32■□□□□ 0.36
UPF1-204ENST00000596842 BICDL1Q6ZP65 573 aa17.32■□□□□ 0.36
UPF1-204ENST00000596842 CCDC102AQ96A19 550 aa17.32■□□□□ 0.36
UPF1-204ENST00000596842 SLF1Q9BQI6 1058 aa17.32■□□□□ 0.36
UPF1-204ENST00000596842 WNT7AO00755 349 aa17.32■□□□□ 0.36
UPF1-204ENST00000596842 MYCNP04198 464 aaPredicted RBP17.32■□□□□ 0.36
UPF1-204ENST00000596842 SGMS1Q86VZ5 419 aa17.32■□□□□ 0.36
UPF1-204ENST00000596842 ENOX1Q8TC92 643 aaKnown RBP17.32■□□□□ 0.36
UPF1-204ENST00000596842 SCN11AQ9UI33 1791 aa17.31■□□□□ 0.36
UPF1-204ENST00000596842 LIFRP42702 1097 aa17.31■□□□□ 0.36
UPF1-204ENST00000596842 GYG1P46976 350 aa17.31■□□□□ 0.36
UPF1-204ENST00000596842 IFIT1BQ5T764 474 aaKnown RBP17.31■□□□□ 0.36
UPF1-204ENST00000596842 JAKMIP3Q5VZ66 844 aa17.31■□□□□ 0.36
UPF1-204ENST00000596842 KCND1Q9NSA2 647 aa17.31■□□□□ 0.36
UPF1-204ENST00000596842 MRFAP1Q9Y605 127 aa17.31■□□□□ 0.36
UPF1-204ENST00000596842 TBC1D8O95759 1140 aa17.31■□□□□ 0.36
UPF1-204ENST00000596842 PLCD1P51178 756 aa17.31■□□□□ 0.36
UPF1-204ENST00000596842 MDM2Q00987 491 aaPredicted RBP17.31■□□□□ 0.36
UPF1-204ENST00000596842 VPS18Q9P253 973 aa17.31■□□□□ 0.36
UPF1-204ENST00000596842 GUCA1BQ9UMX6 200 aa17.31■□□□□ 0.36
UPF1-204ENST00000596842 DYNLL1P63167 89 aaKnown RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms