RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 ASIC1P78348 528 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 ZNF449Q6P9G9 518 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 MIER3Q7Z3K6 550 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 RAB11FIP4Q86YS3 637 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 KLRG1Q96E93 195 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 ALG1Q9BT22 464 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 CNOT7Q9UIV1 285 aaKnown RBP3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 PA2G4Q9UQ80 394 aaKnown RBP3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 PCDHA1Q9Y5I3 950 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 ITSN2Q9NZM3 1697 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 SHANK3Q9BYB0 1731 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 NCOA3Q9Y6Q9 1424 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 ERVV-1B6SEH8 477 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 TNNT1P13805 278 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 FCGRTP55899 365 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 YWHAEP62258 255 aaKnown RBP3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 SETQ01105 290 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 TFAP4Q01664 338 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 NFX1Q12986 1120 aaKnown RBP3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 CFAP100Q494V2 611 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 FERMT3Q86UX7 667 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 FBXO11Q86XK2 927 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 FMNL3Q8IVF7 1028 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 CCDC65Q8IXS2 484 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 CCDC114Q96M63 670 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 ARMT1Q9H993 441 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 PI4KBQ9UBF8 816 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 FRMD4BQ9Y2L6 1034 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 ZHX2Q9Y6X8 837 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 ADGRL3Q9HAR2 1447 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 IBTKQ9P2D0 1353 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 PHLPP1O60346 1717 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 TMEM232C9JQI7 657 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 GAS7O60861 476 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 XRCC6P12956 609 aaKnown RBP eCLIP3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 KRT10P13645 584 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 GYG1P46976 350 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 GABPAQ06546 454 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 CHRNDQ07001 517 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 SNAPC2Q13487 334 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 RRAGBQ5VZM2 374 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 DTHD1Q6ZMT9 781 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 TAX1BP1Q86VP1 789 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 GTF3C2Q8WUA4 911 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 SREK1Q8WXA9 508 aaKnown RBP3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 BRF1Q92994 677 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 TRIM47Q96LD4 638 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 IWS1Q96ST2 819 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 MED10Q9BTT4 135 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 INO80BQ9C086 356 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 BICC1Q9H694 974 aaKnown RBP3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 KANSL2Q9H9L4 492 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 ATP8A2Q9NTI2 1148 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 LIMCH1Q9UPQ0 1083 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 AKT3Q9Y243 479 aa3.3□□□□□ -1.88
SMCHD1-203ENST00000577880 GOLGA6L9A6NEM1 432 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 CETPP11597 493 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 KRT2P35908 639 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 CCT6AP40227 531 aaKnown RBP3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 LETM2Q2VYF4 491 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 ARMCX5Q6P1M9 558 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 MIGA2Q7L4E1 593 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 FILIP1Q7Z7B0 1213 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 RAB3IL1Q8TBN0 382 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 APPBP2Q92624 585 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 DDX12PQ92771 950 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 ERO1AQ96HE7 468 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 ZNF594Q96JF6 807 aaPredicted RBP3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 PANK2Q9BZ23 570 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 PARP2Q9UGN5 583 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 USP17L5A8MUK1 530 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 DCDC2CA8MYV0 355 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 PSMA7O14818 248 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 PRDM1O75626 825 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 VIMP08670 466 aaKnown RBP3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 PTPREP23469 700 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 NFKBIAP25963 317 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 PPP2R5BQ15173 497 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 IFI16Q16666 785 aaKnown RBP3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 ARHGAP29Q52LW3 1261 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 CCDC102BQ68D86 513 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 SEPT14Q6ZU15 432 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 FAM160B2Q86V87 743 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 KCNG4Q8TDN1 519 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 ARHGEF1Q92888 912 aaKnown RBP3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 UIMC1Q96RL1 719 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 NUP62CLQ9H1M0 184 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 EFCC1Q9HA90 598 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 MKRN1Q9UHC7 482 aaKnown RBP3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 IKBKGQ9Y6K9 419 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 FPGT-TNNI3KV9GXZ4 949 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 ANKARQ7Z5J8 1434 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 TTC41PQ6P2S7 1318 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 CARMIL3Q8ND23 1372 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 TMCO5BA8MYB1 307 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 ECE2O60344 883 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 YEATS4O95619 227 aa3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 FOSP01100 380 aaPredicted RBP3.29□□□□□ -1.88
SMCHD1-203ENST00000577880 POLR2BP30876 1174 aaKnown RBP3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms