RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CYP2D7A0A087X1C5 515 aa19.57■□□□□ 0.72
LDLR-206ENST00000557958 NFKBIEO00221 500 aa19.57■□□□□ 0.72
LDLR-206ENST00000557958 PPFIA3O75145 1194 aa19.57■□□□□ 0.72
LDLR-206ENST00000557958 IFNAR1P17181 557 aa19.57■□□□□ 0.72
LDLR-206ENST00000557958 RXRAP19793 462 aa19.57■□□□□ 0.72
LDLR-206ENST00000557958 CDC27P30260 824 aa19.57■□□□□ 0.72
LDLR-206ENST00000557958 RBM5P52756 815 aaKnown RBP eCLIP19.57■□□□□ 0.72
LDLR-206ENST00000557958 IFIT1BQ5T764 474 aaKnown RBP19.57■□□□□ 0.72
LDLR-206ENST00000557958 ARHGAP27Q6ZUM4 889 aa19.57■□□□□ 0.72
LDLR-206ENST00000557958 CATIPQ7Z7H3 387 aa19.57■□□□□ 0.72
LDLR-206ENST00000557958 SH3RF3Q8TEJ3 882 aaPredicted RBP19.57■□□□□ 0.72
LDLR-206ENST00000557958 FAM163AQ96GL9 167 aaPredicted RBP19.57■□□□□ 0.72
LDLR-206ENST00000557958 ZNF287Q9HBT7 754 aa19.57■□□□□ 0.72
LDLR-206ENST00000557958 BAZ2AQ9UIF9 1905 aaKnown RBP19.56■□□□□ 0.72
LDLR-206ENST00000557958 GUCY1B3Q02153 619 aa19.56■□□□□ 0.72
LDLR-206ENST00000557958 SEC23AQ15436 765 aa19.56■□□□□ 0.72
LDLR-206ENST00000557958 SLC4A8Q2Y0W8 1093 aa19.56■□□□□ 0.72
LDLR-206ENST00000557958 CCDC144CPQ8IYA2 1237 aa19.56■□□□□ 0.72
LDLR-206ENST00000557958 MYL10Q9BUA6 226 aa19.56■□□□□ 0.72
LDLR-206ENST00000557958 GPR75-ASB3A0A0A6YYF3 556 aa19.56■□□□□ 0.72
LDLR-206ENST00000557958 FMNL1O95466 1100 aaPredicted RBP19.56■□□□□ 0.72
LDLR-206ENST00000557958 NTRK3Q16288 839 aa19.56■□□□□ 0.72
LDLR-206ENST00000557958 CCDC178Q5BJE1 867 aa19.56■□□□□ 0.72
LDLR-206ENST00000557958 ZNRF3Q9ULT6 936 aa19.56■□□□□ 0.72
LDLR-206ENST00000557958 ROBO3Q96MS0 1386 aa19.55■□□□□ 0.72
LDLR-206ENST00000557958 PSMD14O00487 310 aa19.55■□□□□ 0.72
LDLR-206ENST00000557958 C12orf60Q5U649 245 aa19.55■□□□□ 0.72
LDLR-206ENST00000557958 ENAHQ8N8S7 591 aaPredicted RBP19.55■□□□□ 0.72
LDLR-206ENST00000557958 FANCBQ8NB91 859 aa19.55■□□□□ 0.72
LDLR-206ENST00000557958 VPS33BQ9H267 617 aa19.55■□□□□ 0.72
LDLR-206ENST00000557958 FAM217BQ9NTX9 383 aaPredicted RBP19.55■□□□□ 0.72
LDLR-206ENST00000557958 RBM28Q9NW13 759 aaKnown RBP19.55■□□□□ 0.72
LDLR-206ENST00000557958 MKRN1Q9UHC7 482 aaKnown RBP19.55■□□□□ 0.72
LDLR-206ENST00000557958 PRDM1O75626 825 aa19.54■□□□□ 0.72
LDLR-206ENST00000557958 DDAH1O94760 285 aa19.54■□□□□ 0.72
LDLR-206ENST00000557958 NASPP49321 788 aaPredicted RBP19.54■□□□□ 0.72
LDLR-206ENST00000557958 TGFBRAP1Q8WUH2 860 aa19.54■□□□□ 0.72
LDLR-206ENST00000557958 NUP133Q8WUM0 1156 aa19.54■□□□□ 0.72
LDLR-206ENST00000557958 TEKT1Q969V4 418 aa19.54■□□□□ 0.72
LDLR-206ENST00000557958 SLC26A6Q9BXS9 759 aa19.54■□□□□ 0.72
LDLR-206ENST00000557958 GAKO14976 1311 aa19.54■□□□□ 0.72
LDLR-206ENST00000557958 TSPY2A6NKD2 308 aa19.54■□□□□ 0.72
LDLR-206ENST00000557958 GNL2Q13823 731 aaKnown RBP19.54■□□□□ 0.72
LDLR-206ENST00000557958 PHKBQ93100 1093 aa19.54■□□□□ 0.72
LDLR-206ENST00000557958 TSPY26PQ9H489 355 aa19.54■□□□□ 0.72
LDLR-206ENST00000557958 ZBTB12Q9Y330 459 aaPredicted RBP19.54■□□□□ 0.72
LDLR-206ENST00000557958 DAGLAQ9Y4D2 1042 aa19.54■□□□□ 0.72
LDLR-206ENST00000557958 TEX11Q8IYF3 940 aa19.53■□□□□ 0.72
LDLR-206ENST00000557958 BICD2Q8TD16 824 aa19.53■□□□□ 0.72
LDLR-206ENST00000557958 RCOR1Q9UKL0 485 aa19.53■□□□□ 0.72
LDLR-206ENST00000557958 DEXIO95424 95 aa19.52■□□□□ 0.72
LDLR-206ENST00000557958 POLR3DP05423 398 aaPredicted RBP19.52■□□□□ 0.72
LDLR-206ENST00000557958 USP17L8P0C7I0 530 aa19.52■□□□□ 0.72
LDLR-206ENST00000557958 CRKP46108 304 aa19.52■□□□□ 0.72
LDLR-206ENST00000557958 AKAP17AQ02040 695 aaKnown RBP19.52■□□□□ 0.72
LDLR-206ENST00000557958 TPRNQ4KMQ1 711 aa19.52■□□□□ 0.72
LDLR-206ENST00000557958 MAPKAPK5Q8IW41 473 aa19.52■□□□□ 0.72
LDLR-206ENST00000557958 DDX19AQ9NUU7 478 aaKnown RBP19.52■□□□□ 0.72
LDLR-206ENST00000557958 BRCA1P38398 1863 aaKnown RBP19.52■□□□□ 0.72
LDLR-206ENST00000557958 MYH2Q9UKX2 1941 aa19.52■□□□□ 0.72
LDLR-206ENST00000557958 KIF23Q02241 960 aaPredicted RBP19.52■□□□□ 0.71
LDLR-206ENST00000557958 SAFBQ15424 915 aaKnown RBP eCLIP19.52■□□□□ 0.71
LDLR-206ENST00000557958 KRT40Q6A162 431 aa19.52■□□□□ 0.71
LDLR-206ENST00000557958 RSBN1LQ6PCB5 846 aaPredicted RBP19.52■□□□□ 0.71
LDLR-206ENST00000557958 MKNK2Q9HBH9 465 aa19.52■□□□□ 0.71
LDLR-206ENST00000557958 RTEL1Q9NZ71 1219 aa19.52■□□□□ 0.71
LDLR-206ENST00000557958 PCDHAC2Q9Y5I4 1007 aa19.52■□□□□ 0.71
LDLR-206ENST00000557958 MYH15Q9Y2K3 1946 aa19.52■□□□□ 0.71
LDLR-206ENST00000557958 COL4A5P29400 1685 aa19.51■□□□□ 0.71
LDLR-206ENST00000557958 CYP2D6P10635 497 aa19.51■□□□□ 0.71
LDLR-206ENST00000557958 XBP1P17861 261 aa19.51■□□□□ 0.71
LDLR-206ENST00000557958 FKBP1AP62942 108 aaKnown RBP19.51■□□□□ 0.71
LDLR-206ENST00000557958 CXCL9Q07325 125 aa19.51■□□□□ 0.71
LDLR-206ENST00000557958 RNF26Q9BY78 433 aaPredicted RBP19.51■□□□□ 0.71
LDLR-206ENST00000557958 USP40Q9NVE5 1235 aa19.51■□□□□ 0.71
LDLR-206ENST00000557958 SAP30BPQ9UHR5 308 aaKnown RBP19.51■□□□□ 0.71
LDLR-206ENST00000557958 SCN9AQ15858 1988 aa19.51■□□□□ 0.71
LDLR-206ENST00000557958 NAV1Q8NEY1 1877 aa19.5■□□□□ 0.71
LDLR-206ENST00000557958 SMIM22K7EJ46 135 aa19.5■□□□□ 0.71
LDLR-206ENST00000557958 PICALMQ13492 652 aa19.5■□□□□ 0.71
LDLR-206ENST00000557958 OTUD7BQ6GQQ9 843 aa19.5■□□□□ 0.71
LDLR-206ENST00000557958 CRACR2BQ8N4Y2 399 aaPredicted RBP19.5■□□□□ 0.71
LDLR-206ENST00000557958 KCNG4Q8TDN1 519 aa19.5■□□□□ 0.71
LDLR-206ENST00000557958 USP28Q96RU2 1077 aa19.5■□□□□ 0.71
LDLR-206ENST00000557958 POLR3EQ9NVU0 708 aa19.5■□□□□ 0.71
LDLR-206ENST00000557958 YEATS4O95619 227 aa19.5■□□□□ 0.71
LDLR-206ENST00000557958 VIL1P09327 827 aaKnown RBP19.5■□□□□ 0.71
LDLR-206ENST00000557958 CEBPZQ03701 1054 aaKnown RBP19.5■□□□□ 0.71
LDLR-206ENST00000557958 MYSM1Q5VVJ2 828 aa19.5■□□□□ 0.71
LDLR-206ENST00000557958 CIAPIN1Q6FI81 312 aa19.5■□□□□ 0.71
LDLR-206ENST00000557958 HHIPL2Q6UWX4 724 aa19.5■□□□□ 0.71
LDLR-206ENST00000557958 CTCFLQ8NI51 663 aaPredicted RBP19.5■□□□□ 0.71
LDLR-206ENST00000557958 NUP62CLQ9H1M0 184 aa19.5■□□□□ 0.71
LDLR-206ENST00000557958 SRCAPQ6ZRS2 3230 aa19.49■□□□□ 0.71
LDLR-206ENST00000557958 PRELPP51888 382 aa19.49■□□□□ 0.71
LDLR-206ENST00000557958 DGKHQ86XP1 1220 aa19.49■□□□□ 0.71
LDLR-206ENST00000557958 ZNF444Q8N0Y2 327 aaPredicted RBP19.49■□□□□ 0.71
LDLR-206ENST00000557958 KIF5BP33176 963 aa19.48■□□□□ 0.71
LDLR-206ENST00000557958 RHBDL3P58872 404 aa19.48■□□□□ 0.71
LDLR-206ENST00000557958 FAM47AQ5JRC9 791 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms