RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 AGTPBP1Q9UPW5 1226 aa10.38□□□□□ -0.75
USP28-215ENST00000545608 RBBP6Q7Z6E9 1792 aaKnown RBP10.37□□□□□ -0.75
USP28-215ENST00000545608 BAG3O95817 575 aa10.37□□□□□ -0.75
USP28-215ENST00000545608 CCL5P13501 91 aa10.37□□□□□ -0.75
USP28-215ENST00000545608 FLT3LGP49771 235 aa10.37□□□□□ -0.75
USP28-215ENST00000545608 JAG1P78504 1218 aa10.37□□□□□ -0.75
USP28-215ENST00000545608 MAPKAPK5Q8IW41 473 aa10.37□□□□□ -0.75
USP28-215ENST00000545608 ANKRD13CQ8N6S4 541 aa10.37□□□□□ -0.75
USP28-215ENST00000545608 ZNF280CQ8ND82 737 aa10.37□□□□□ -0.75
USP28-215ENST00000545608 SMCR8Q8TEV9 937 aaPredicted RBP10.37□□□□□ -0.75
USP28-215ENST00000545608 NOL10Q9BSC4 688 aaKnown RBP10.37□□□□□ -0.75
USP28-215ENST00000545608 PI4KBQ9UBF8 816 aa10.37□□□□□ -0.75
USP28-215ENST00000545608 BIN2Q9UBW5 565 aaPredicted RBP10.37□□□□□ -0.75
USP28-215ENST00000545608 HERC5Q9UII4 1024 aaKnown RBP10.37□□□□□ -0.75
USP28-215ENST00000545608 DOCK2Q92608 1830 aa10.37□□□□□ -0.75
USP28-215ENST00000545608 COL2A1P02458 1487 aaPredicted RBP10.36□□□□□ -0.75
USP28-215ENST00000545608 USP17L5A8MUK1 530 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 TNPO2O14787 897 aaKnown RBP10.36□□□□□ -0.75
USP28-215ENST00000545608 ADCY3O60266 1144 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 GJB1P08034 283 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 ELNP15502 786 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 PLCG2P16885 1265 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 TIE1P35590 1138 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 GJA8P48165 433 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 HMGCS2P54868 508 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 DYNLL1P63167 89 aaKnown RBP10.36□□□□□ -0.75
USP28-215ENST00000545608 UBXN2AP68543 259 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 SH3D19Q5HYK7 790 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 CEP85Q6P2H3 762 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 PROCA1Q8NCQ7 364 aaPredicted RBP10.36□□□□□ -0.75
USP28-215ENST00000545608 SLAIN1Q8ND83 568 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 RNF208Q9H0X6 261 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 UNC93B1Q9H1C4 597 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 DHX36Q9H2U1 1008 aaKnown RBP10.36□□□□□ -0.75
USP28-215ENST00000545608 DNAJC18Q9H819 358 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 PCDH10Q9P2E7 1040 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 PALD1Q9ULE6 856 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 HTTP42858 3142 aa10.36□□□□□ -0.75
USP28-215ENST00000545608 FLT1P17948 1338 aa10.35□□□□□ -0.75
USP28-215ENST00000545608 C19orf67A6NJJ6 358 aa10.35□□□□□ -0.75
USP28-215ENST00000545608 CYP7A1P22680 504 aa10.35□□□□□ -0.75
USP28-215ENST00000545608 SHROOM1Q2M3G4 852 aaPredicted RBP10.35□□□□□ -0.75
USP28-215ENST00000545608 UBE2Q1Q7Z7E8 422 aa10.35□□□□□ -0.75
USP28-215ENST00000545608 METTL16Q86W50 562 aaKnown RBP10.35□□□□□ -0.75
USP28-215ENST00000545608 FOXP4Q8IVH2 680 aaPredicted RBP10.35□□□□□ -0.75
USP28-215ENST00000545608 NKX2-3Q8TAU0 364 aa10.35□□□□□ -0.75
USP28-215ENST00000545608 PANK1Q8TE04 598 aa10.35□□□□□ -0.75
USP28-215ENST00000545608 WDR18Q9BV38 432 aa10.35□□□□□ -0.75
USP28-215ENST00000545608 TBC1D2Q9BYX2 928 aa10.35□□□□□ -0.75
USP28-215ENST00000545608 ASCC2Q9H1I8 757 aaPredicted RBP10.35□□□□□ -0.75
USP28-215ENST00000545608 SAP30BPQ9UHR5 308 aaKnown RBP10.35□□□□□ -0.75
USP28-215ENST00000545608 PNMA3Q9UL41 463 aa10.35□□□□□ -0.75
USP28-215ENST00000545608 ARIH1Q9Y4X5 557 aaPredicted RBP10.35□□□□□ -0.75
USP28-215ENST00000545608 GTF3C3Q9Y5Q9 886 aa10.35□□□□□ -0.75
USP28-215ENST00000545608 NDUFB9Q9Y6M9 179 aa10.35□□□□□ -0.75
USP28-215ENST00000545608 H0YGN5 161 aa10.34□□□□□ -0.75
USP28-215ENST00000545608 IDH1O75874 414 aaKnown RBP10.34□□□□□ -0.75
USP28-215ENST00000545608 GDF11O95390 407 aa10.34□□□□□ -0.75
USP28-215ENST00000545608 INHAP05111 366 aa10.34□□□□□ -0.75
USP28-215ENST00000545608 GCLCP48506 637 aaPredicted RBP10.34□□□□□ -0.75
USP28-215ENST00000545608 IRF5Q13568 498 aa10.34□□□□□ -0.75
USP28-215ENST00000545608 FAM110CQ1W6H9 321 aa10.34□□□□□ -0.75
USP28-215ENST00000545608 DIEXFQ68CQ4 756 aaKnown RBP10.34□□□□□ -0.75
USP28-215ENST00000545608 PXYLP1Q8TE99 480 aa10.34□□□□□ -0.75
USP28-215ENST00000545608 U2AF1L4Q8WU68 220 aaKnown RBP10.34□□□□□ -0.75
USP28-215ENST00000545608 COA7Q96BR5 231 aa10.34□□□□□ -0.75
USP28-215ENST00000545608 ANTXR1Q9H6X2 564 aa10.34□□□□□ -0.75
USP28-215ENST00000545608 AS3MTQ9HBK9 375 aa10.34□□□□□ -0.75
USP28-215ENST00000545608 TRPC6Q9Y210 931 aa10.34□□□□□ -0.75
USP28-215ENST00000545608 COLQQ9Y215 455 aaPredicted RBP10.34□□□□□ -0.75
USP28-215ENST00000545608 EXOC6BQ9Y2D4 811 aa10.34□□□□□ -0.75
USP28-215ENST00000545608 PHIPQ8WWQ0 1821 aa10.34□□□□□ -0.75
USP28-215ENST00000545608 DOCK1Q14185 1865 aa10.34□□□□□ -0.75
USP28-215ENST00000545608 PEX10O60683 326 aa10.33□□□□□ -0.76
USP28-215ENST00000545608 IGSF3O75054 1194 aa10.33□□□□□ -0.76
USP28-215ENST00000545608 SGPL1O95470 568 aa10.33□□□□□ -0.76
USP28-215ENST00000545608 ASNSP08243 561 aa10.33□□□□□ -0.76
USP28-215ENST00000545608 BACE1P56817 501 aa10.33□□□□□ -0.76
USP28-215ENST00000545608 PABPC4Q13310 644 aaKnown RBP eCLIP10.33□□□□□ -0.76
USP28-215ENST00000545608 MTMR2Q13614 643 aa10.33□□□□□ -0.76
USP28-215ENST00000545608 CRACR2BQ8N4Y2 399 aaPredicted RBP10.33□□□□□ -0.76
USP28-215ENST00000545608 MAGEB6Q8N7X4 407 aa10.33□□□□□ -0.76
USP28-215ENST00000545608 MIGA1Q8NAN2 632 aa10.33□□□□□ -0.76
USP28-215ENST00000545608 DPF3Q92784 378 aa10.33□□□□□ -0.76
USP28-215ENST00000545608 P2RX7Q99572 595 aaKnown RBP10.33□□□□□ -0.76
USP28-215ENST00000545608 GJD2Q9UKL4 321 aa10.33□□□□□ -0.76
USP28-215ENST00000545608 HOXA7P31268 230 aaPredicted RBP10.32□□□□□ -0.76
USP28-215ENST00000545608 AACSQ86V21 672 aa10.32□□□□□ -0.76
USP28-215ENST00000545608 DEFB118Q96PH6 123 aa10.32□□□□□ -0.76
USP28-215ENST00000545608 TRIM34Q9BYJ4 488 aa10.32□□□□□ -0.76
USP28-215ENST00000545608 IL1RAPL2Q9NP60 686 aa10.32□□□□□ -0.76
USP28-215ENST00000545608 TMOD4Q9NZQ9 345 aa10.32□□□□□ -0.76
USP28-215ENST00000545608 MORF4L1Q9UBU8 362 aa10.32□□□□□ -0.76
USP28-215ENST00000545608 ZBTB21Q9ULJ3 1066 aa10.32□□□□□ -0.76
USP28-215ENST00000545608 PTPRFP10586 1907 aa10.32□□□□□ -0.76
USP28-215ENST00000545608 ZBED9Q6R2W3 1325 aa10.32□□□□□ -0.76
USP28-215ENST00000545608 C19orf81C9J6K1 198 aa10.31□□□□□ -0.76
USP28-215ENST00000545608 USP17L10C9JJH3 530 aa10.31□□□□□ -0.76
USP28-215ENST00000545608 FARP2O94887 1054 aaPredicted RBP10.31□□□□□ -0.76
USP28-215ENST00000545608 TFRCP02786 760 aaKnown RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms