RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 DIEXFQ68CQ4 756 aaKnown RBP17.25■□□□□ 0.35
SNHG1-213ENST00000540725 PANK1Q8TE04 598 aa17.25■□□□□ 0.35
SNHG1-213ENST00000540725 COLQQ9Y215 455 aaPredicted RBP17.25■□□□□ 0.35
SNHG1-213ENST00000540725 EXOC6BQ9Y2D4 811 aa17.25■□□□□ 0.35
SNHG1-213ENST00000540725 HLA-DOAP06340 250 aa17.24■□□□□ 0.35
SNHG1-213ENST00000540725 SHROOM1Q2M3G4 852 aaPredicted RBP17.24■□□□□ 0.35
SNHG1-213ENST00000540725 ERC1Q8IUD2 1116 aa17.24■□□□□ 0.35
SNHG1-213ENST00000540725 MIGA1Q8NAN2 632 aa17.24■□□□□ 0.35
SNHG1-213ENST00000540725 DPF3Q92784 378 aa17.24■□□□□ 0.35
SNHG1-213ENST00000540725 GINM1Q9NU53 330 aa17.24■□□□□ 0.35
SNHG1-213ENST00000540725 TMOD4Q9NZQ9 345 aa17.24■□□□□ 0.35
SNHG1-213ENST00000540725 ZBTB21Q9ULJ3 1066 aa17.24■□□□□ 0.35
SNHG1-213ENST00000540725 NDUFB9Q9Y6M9 179 aa17.24■□□□□ 0.35
SNHG1-213ENST00000540725 RANBP2P49792 3224 aaKnown RBP17.24■□□□□ 0.35
SNHG1-213ENST00000540725 NAV1Q8NEY1 1877 aa17.23■□□□□ 0.35
SNHG1-213ENST00000540725 FARP2O94887 1054 aaPredicted RBP17.23■□□□□ 0.35
SNHG1-213ENST00000540725 SGPL1O95470 568 aa17.23■□□□□ 0.35
SNHG1-213ENST00000540725 IRX3P78415 501 aaPredicted RBP17.23■□□□□ 0.35
SNHG1-213ENST00000540725 AACSQ86V21 672 aa17.23■□□□□ 0.35
SNHG1-213ENST00000540725 MAGEB6Q8N7X4 407 aa17.23■□□□□ 0.35
SNHG1-213ENST00000540725 HTATIP2Q9BUP3 242 aa17.23■□□□□ 0.35
SNHG1-213ENST00000540725 C19orf81C9J6K1 198 aa17.22■□□□□ 0.35
SNHG1-213ENST00000540725 CERS3Q8IU89 383 aa17.22■□□□□ 0.35
SNHG1-213ENST00000540725 ANTXR1Q9H6X2 564 aa17.22■□□□□ 0.35
SNHG1-213ENST00000540725 MORF4L1Q9UBU8 362 aa17.22■□□□□ 0.35
SNHG1-213ENST00000540725 DDX60LQ5H9U9 1706 aaKnown RBP17.22■□□□□ 0.35
SNHG1-213ENST00000540725 ALPK3Q96L96 1907 aa17.22■□□□□ 0.35
SNHG1-213ENST00000540725 USP17L10C9JJH3 530 aa17.21■□□□□ 0.35
SNHG1-213ENST00000540725 HOXA7P31268 230 aaPredicted RBP17.21■□□□□ 0.35
SNHG1-213ENST00000540725 USP5P45974 858 aa17.21■□□□□ 0.35
SNHG1-213ENST00000540725 FXR1P51114 621 aaKnown RBP eCLIP17.21■□□□□ 0.35
SNHG1-213ENST00000540725 MAP3K12Q12852 859 aa17.21■□□□□ 0.35
SNHG1-213ENST00000540725 DEFB118Q96PH6 123 aa17.21■□□□□ 0.35
SNHG1-213ENST00000540725 P2RX7Q99572 595 aaKnown RBP17.21■□□□□ 0.35
SNHG1-213ENST00000540725 PAK6Q9NQU5 681 aaPredicted RBP17.21■□□□□ 0.35
SNHG1-213ENST00000540725 TFRCP02786 760 aaKnown RBP17.2■□□□□ 0.34
SNHG1-213ENST00000540725 HSP90AB4PQ58FF6 505 aa17.2■□□□□ 0.34
SNHG1-213ENST00000540725 TMED8Q6PL24 325 aaPredicted RBP17.2■□□□□ 0.34
SNHG1-213ENST00000540725 IL1RAPL2Q9NP60 686 aa17.2■□□□□ 0.34
SNHG1-213ENST00000540725 GJD2Q9UKL4 321 aa17.2■□□□□ 0.34
SNHG1-213ENST00000540725 GH2P01242 217 aa17.19■□□□□ 0.34
SNHG1-213ENST00000540725 HMGCRP04035 888 aa17.19■□□□□ 0.34
SNHG1-213ENST00000540725 CAPN2P17655 700 aa17.19■□□□□ 0.34
SNHG1-213ENST00000540725 HERVK_113P62684 666 aa17.19■□□□□ 0.34
SNHG1-213ENST00000540725 RHPN1Q8TCX5 695 aa17.19■□□□□ 0.34
SNHG1-213ENST00000540725 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.19■□□□□ 0.341e-6■■□□□ 14.4
SNHG1-213ENST00000540725 SERPINB13Q9UIV8 391 aa17.19■□□□□ 0.34
SNHG1-213ENST00000540725 MYH8P13535 1937 aa17.19■□□□□ 0.34
SNHG1-213ENST00000540725 PEX10O60683 326 aa17.18■□□□□ 0.34
SNHG1-213ENST00000540725 MS4A1P11836 297 aa17.18■□□□□ 0.34
SNHG1-213ENST00000540725 TATDN1Q6P1N9 297 aa17.18■□□□□ 0.34
SNHG1-213ENST00000540725 CHRDL2Q6WN34 429 aa17.18■□□□□ 0.34
SNHG1-213ENST00000540725 CRISPLD2Q9H0B8 497 aa17.18■□□□□ 0.34
SNHG1-213ENST00000540725 EHD4Q9H223 541 aa17.18■□□□□ 0.34
SNHG1-213ENST00000540725 TXNRD2Q9NNW7 524 aa17.18■□□□□ 0.34
SNHG1-213ENST00000540725 EMILIN3Q9NT22 766 aa17.18■□□□□ 0.34
SNHG1-213ENST00000540725 USP17L2Q6R6M4 530 aa17.17■□□□□ 0.34
SNHG1-213ENST00000540725 TTC6Q86TZ1 520 aa17.17■□□□□ 0.34
SNHG1-213ENST00000540725 GPRC5AQ8NFJ5 357 aa17.17■□□□□ 0.34
SNHG1-213ENST00000540725 RIOK1Q9BRS2 568 aaKnown RBP17.17■□□□□ 0.34
SNHG1-213ENST00000540725 NR2E3Q9Y5X4 410 aa17.17■□□□□ 0.34
SNHG1-213ENST00000540725 MYH7P12883 1935 aa17.17■□□□□ 0.34
SNHG1-213ENST00000540725 APBB1O00213 710 aa17.16■□□□□ 0.34
SNHG1-213ENST00000540725 TTF1Q15361 905 aaPredicted RBP17.16■□□□□ 0.34
SNHG1-213ENST00000540725 CLASRPQ8N2M8 674 aaKnown RBP17.16■□□□□ 0.34
SNHG1-213ENST00000540725 GTF3C2Q8WUA4 911 aaPredicted RBP17.16■□□□□ 0.34
SNHG1-213ENST00000540725 FEZ1Q99689 392 aa17.16■□□□□ 0.34
SNHG1-213ENST00000540725 RBPJLQ9UBG7 517 aa17.16■□□□□ 0.34
SNHG1-213ENST00000540725 MAGEB6P1A0A0J9YX57 407 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 HMMRO75330 724 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 PDE6AP16499 860 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 CYP2B6P20813 491 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 ERVK-9P63128 1117 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 ERVK-24P63145 666 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 TRIM32Q13049 653 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 ZYXQ15942 572 aaKnown RBP17.15■□□□□ 0.34
SNHG1-213ENST00000540725 CERKLQ49MI3 558 aaPredicted RBP17.15■□□□□ 0.34
SNHG1-213ENST00000540725 RPAP2Q8IXW5 612 aaPredicted RBP17.15■□□□□ 0.34
SNHG1-213ENST00000540725 TRIB2Q92519 343 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 KIF1BPQ96EK5 621 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 PAGR1Q9BTK6 254 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 DDX19BQ9UMR2 479 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 BAZ2AQ9UIF9 1905 aaKnown RBP17.15■□□□□ 0.34
SNHG1-213ENST00000540725 SZT2Q5T011 3432 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 RPTORQ8N122 1335 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 MAPK4P31152 587 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 RAB3GAP1Q15042 981 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 ABCB5Q2M3G0 1257 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 Q3C1V9 767 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 SLC9C2Q5TAH2 1124 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.15■□□□□ 0.34
SNHG1-213ENST00000540725 SOCS4Q8WXH5 440 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 PAWRQ96IZ0 340 aaKnown RBP17.15■□□□□ 0.34
SNHG1-213ENST00000540725 C12orf42Q96LP6 360 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 NUDT12Q9BQG2 462 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 HMX1Q9NP08 348 aaPredicted RBP17.15■□□□□ 0.34
SNHG1-213ENST00000540725 COG6Q9Y2V7 657 aa17.15■□□□□ 0.34
SNHG1-213ENST00000540725 GOLIM4O00461 696 aa17.14■□□□□ 0.33
SNHG1-213ENST00000540725 EVI5O60447 810 aa17.14■□□□□ 0.33
SNHG1-213ENST00000540725 IFIT2P09913 472 aaKnown RBP17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms