RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 UQCRFS1P1P0C7P4 283 aa16.17■□□□□ 0.18
USP48-213ENST00000529637 FMR1Q06787 632 aaKnown RBP eCLIP16.17■□□□□ 0.182e-6■■□□□ 12.9
USP48-213ENST00000529637 BRD3Q15059 726 aa16.17■□□□□ 0.18
USP48-213ENST00000529637 MIGA1Q8NAN2 632 aa16.17■□□□□ 0.18
USP48-213ENST00000529637 RGS22Q8NE09 1264 aa16.17■□□□□ 0.18
USP48-213ENST00000529637 L1RE1Q9UN81 338 aa16.17■□□□□ 0.18
USP48-213ENST00000529637 STRCP1A6NGW2 1772 aa16.17■□□□□ 0.18
USP48-213ENST00000529637 RIC1Q4ADV7 1423 aa16.17■□□□□ 0.18
USP48-213ENST00000529637 ABL1P00519 1130 aa16.17■□□□□ 0.18
USP48-213ENST00000529637 CYP19A1P11511 503 aaPredicted RBP16.17■□□□□ 0.18
USP48-213ENST00000529637 SLC5A1P13866 664 aa16.17■□□□□ 0.18
USP48-213ENST00000529637 PUM3Q15397 648 aaKnown RBP16.17■□□□□ 0.18
USP48-213ENST00000529637 ZNF827Q17R98 1081 aa16.17■□□□□ 0.18
USP48-213ENST00000529637 SRGAP1Q7Z6B7 1085 aa16.17■□□□□ 0.18
USP48-213ENST00000529637 SH2B2O14492 632 aaPredicted RBP16.17■□□□□ 0.18
USP48-213ENST00000529637 JMYQ8N9B5 988 aa16.17■□□□□ 0.18
USP48-213ENST00000529637 SPATA5Q8NB90 893 aa16.17■□□□□ 0.18
USP48-213ENST00000529637 NUP133Q8WUM0 1156 aa16.17■□□□□ 0.18
USP48-213ENST00000529637 SLC4A9Q96Q91 983 aa16.17■□□□□ 0.18
USP48-213ENST00000529637 TJP1Q07157 1748 aa16.17■□□□□ 0.18
USP48-213ENST00000529637 EXOC5O00471 708 aa16.16■□□□□ 0.18
USP48-213ENST00000529637 VSNL1P62760 191 aa16.16■□□□□ 0.18
USP48-213ENST00000529637 SLC39A14Q15043 492 aa16.16■□□□□ 0.18
USP48-213ENST00000529637 UBE3CQ15386 1083 aa16.16■□□□□ 0.18
USP48-213ENST00000529637 LRRC31Q6UY01 552 aa16.16■□□□□ 0.18
USP48-213ENST00000529637 LPIN2Q92539 896 aa16.16■□□□□ 0.18
USP48-213ENST00000529637 SEC31BQ9NQW1 1179 aa16.16■□□□□ 0.18
USP48-213ENST00000529637 HPSEQ9Y251 543 aa16.16■□□□□ 0.18
USP48-213ENST00000529637 HDXQ7Z353 690 aa16.16■□□□□ 0.18
USP48-213ENST00000529637 CMTR1Q8N1G2 835 aaKnown RBP16.16■□□□□ 0.18
USP48-213ENST00000529637 FBXL16Q8N461 479 aa16.16■□□□□ 0.18
USP48-213ENST00000529637 DRC1Q96MC2 740 aa16.16■□□□□ 0.18
USP48-213ENST00000529637 LRP2BPQ9P2M1 347 aa16.16■□□□□ 0.18
USP48-213ENST00000529637 JRKLQ9Y4A0 524 aa16.16■□□□□ 0.18
USP48-213ENST00000529637 CDHR2Q9BYE9 1310 aa16.16■□□□□ 0.18
USP48-213ENST00000529637 TNS2Q63HR2 1409 aa16.16■□□□□ 0.18
USP48-213ENST00000529637 LOC102724159A0A0B4J2E5 919 aa16.15■□□□□ 0.18
USP48-213ENST00000529637 PRKAB2O43741 272 aa16.15■□□□□ 0.18
USP48-213ENST00000529637 PWP2Q15269 919 aaKnown RBP16.15■□□□□ 0.18
USP48-213ENST00000529637 JAKMIP3Q5VZ66 844 aa16.15■□□□□ 0.18
USP48-213ENST00000529637 STRBPQ96SI9 672 aaKnown RBP16.15■□□□□ 0.18
USP48-213ENST00000529637 ABCF2Q9UG63 623 aa16.15■□□□□ 0.18
USP48-213ENST00000529637 PARP4Q9UKK3 1724 aaKnown RBP16.15■□□□□ 0.18
USP48-213ENST00000529637 SPECC1LQ69YQ0 1117 aa16.15■□□□□ 0.18
USP48-213ENST00000529637 RAD9BQ6WBX8 426 aa16.15■□□□□ 0.18
USP48-213ENST00000529637 CPLX3Q8WVH0 158 aa16.15■□□□□ 0.18
USP48-213ENST00000529637 CCDC102AQ96A19 550 aa16.15■□□□□ 0.18
USP48-213ENST00000529637 MED15Q96RN5 788 aa16.15■□□□□ 0.18
USP48-213ENST00000529637 MAGEA9P43362 315 aa16.15■□□□□ 0.18
USP48-213ENST00000529637 SSRP1Q08945 709 aaKnown RBP16.15■□□□□ 0.18
USP48-213ENST00000529637 RASGRF1Q13972 1273 aa16.15■□□□□ 0.18
USP48-213ENST00000529637 SART3Q15020 963 aaKnown RBP16.15■□□□□ 0.18
USP48-213ENST00000529637 TTC31Q49AM3 519 aaPredicted RBP16.15■□□□□ 0.18
USP48-213ENST00000529637 OLFM4Q6UX06 510 aa16.15■□□□□ 0.18
USP48-213ENST00000529637 IFNL3Q8IZI9 196 aa16.15■□□□□ 0.18
USP48-213ENST00000529637 ACSBG1Q96GR2 724 aa16.15■□□□□ 0.18
USP48-213ENST00000529637 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.15■□□□□ 0.18
USP48-213ENST00000529637 SAMSN1Q9NSI8 373 aaKnown RBP16.15■□□□□ 0.18
USP48-213ENST00000529637 ZSWIM5Q9P217 1185 aa16.15■□□□□ 0.18
USP48-213ENST00000529637 NFE2L3Q9Y4A8 694 aa16.15■□□□□ 0.18
USP48-213ENST00000529637 GOLGA6L9A6NEM1 432 aa16.14■□□□□ 0.17
USP48-213ENST00000529637 MINDY4BA8MYZ0 360 aa16.14■□□□□ 0.17
USP48-213ENST00000529637 SAFBQ15424 915 aaKnown RBP eCLIP16.14■□□□□ 0.172e-6■■■■□ 20.7
USP48-213ENST00000529637 MFSD6Q6ZSS7 791 aa16.14■□□□□ 0.17
USP48-213ENST00000529637 SLC4A4Q9Y6R1 1079 aa16.14■□□□□ 0.17
USP48-213ENST00000529637 NUP188Q5SRE5 1749 aa16.14■□□□□ 0.17
USP48-213ENST00000529637 LRRIQ3A6PVS8 624 aaPredicted RBP16.14■□□□□ 0.17
USP48-213ENST00000529637 IVLP07476 585 aa16.14■□□□□ 0.17
USP48-213ENST00000529637 HNRNPLLQ8WVV9 542 aaKnown RBP16.14■□□□□ 0.17
USP48-213ENST00000529637 TMEM87BQ96K49 555 aa16.14■□□□□ 0.17
USP48-213ENST00000529637 KCNJ14Q9UNX9 436 aa16.14■□□□□ 0.17
USP48-213ENST00000529637 ERICH2A1L162 156 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 TEX33O43247 280 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 BCAMP50895 628 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 CASP8Q14790 479 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 VGLL2Q8N8G2 317 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 CNNM3Q8NE01 707 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 RAB21Q9UL25 225 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 UBN2Q6ZU65 1347 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 ZNF569Q5MCW4 686 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 ABCC12Q96J65 1359 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 NACAP1Q9BZK3 213 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 PATL2C9JE40 543 aaKnown RBP16.13■□□□□ 0.17
USP48-213ENST00000529637 USP5P45974 858 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 PTPAQ15257 358 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 E2F4Q16254 413 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 TRIM22Q8IYM9 498 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 GRAMD1CQ8IYS0 662 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 CDC23Q9UJX2 597 aa16.13■□□□□ 0.17
USP48-213ENST00000529637 GOLGA6L1Q8N7Z2 621 aa16.12■□□□□ 0.17
USP48-213ENST00000529637 LY9Q9HBG7 655 aa16.12■□□□□ 0.17
USP48-213ENST00000529637 EPB41L4AQ9HCS5 686 aaPredicted RBP16.12■□□□□ 0.17
USP48-213ENST00000529637 BTBD18B2RXH4 712 aa16.12■□□□□ 0.17
USP48-213ENST00000529637 CCDC175P0C221 793 aa16.12■□□□□ 0.17
USP48-213ENST00000529637 PRR29P0C7W0 189 aa16.12■□□□□ 0.17
USP48-213ENST00000529637 SUSD4Q5VX71 490 aa16.12■□□□□ 0.17
USP48-213ENST00000529637 NOA1Q8NC60 698 aaKnown RBP16.12■□□□□ 0.17
USP48-213ENST00000529637 MSANTD4Q8NCY6 345 aa16.12■□□□□ 0.17
USP48-213ENST00000529637 IGDCC4Q8TDY8 1250 aa16.12■□□□□ 0.17
USP48-213ENST00000529637 CDC5LQ99459 802 aaKnown RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 737.6 ms