RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 ZKSCAN4Q969J2 545 aaPredicted RBP16.25■□□□□ 0.19
CD44-224ENST00000526669 KLRG1Q96E93 195 aa16.25■□□□□ 0.19
CD44-224ENST00000526669 EPB41L2O43491 1005 aaKnown RBP16.24■□□□□ 0.19
CD44-224ENST00000526669 COL9A3Q14050 684 aaPredicted RBP16.24■□□□□ 0.19
CD44-224ENST00000526669 TATDN1Q6P1N9 297 aa16.24■□□□□ 0.19
CD44-224ENST00000526669 CCDC84Q86UT8 332 aaPredicted RBP16.24■□□□□ 0.19
CD44-224ENST00000526669 C2orf69Q8N8R5 385 aa16.24■□□□□ 0.19
CD44-224ENST00000526669 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.24■□□□□ 0.19
CD44-224ENST00000526669 CLMNQ96JQ2 1002 aa16.24■□□□□ 0.19
CD44-224ENST00000526669 RNF41Q9H4P4 317 aaPredicted RBP16.24■□□□□ 0.19
CD44-224ENST00000526669 ORC4O43929 436 aa16.23■□□□□ 0.19
CD44-224ENST00000526669 GH2P01242 217 aa16.23■□□□□ 0.19
CD44-224ENST00000526669 ZKSCAN1P17029 563 aaPredicted RBP16.23■□□□□ 0.19
CD44-224ENST00000526669 MAP3K9P80192 1104 aa16.23■□□□□ 0.19
CD44-224ENST00000526669 ADCK5Q3MIX3 580 aa16.23■□□□□ 0.19
CD44-224ENST00000526669 CLEC10AQ8IUN9 316 aa16.23■□□□□ 0.19
CD44-224ENST00000526669 ZNF444Q8N0Y2 327 aaPredicted RBP16.23■□□□□ 0.19
CD44-224ENST00000526669 C22orf23Q9BZE7 217 aa16.23■□□□□ 0.19
CD44-224ENST00000526669 ELP3Q9H9T3 547 aa16.23■□□□□ 0.19
CD44-224ENST00000526669 UPF2Q9HAU5 1272 aaKnown RBP16.23■□□□□ 0.19
CD44-224ENST00000526669 ZNF112Q9UJU3 913 aa16.23■□□□□ 0.19
CD44-224ENST00000526669 MYH6P13533 1939 aa16.23■□□□□ 0.19
CD44-224ENST00000526669 TSPY2A6NKD2 308 aa16.22■□□□□ 0.19
CD44-224ENST00000526669 KDM4AO75164 1064 aa16.22■□□□□ 0.19
CD44-224ENST00000526669 FGRP09769 529 aa16.22■□□□□ 0.19
CD44-224ENST00000526669 CPA1P15085 419 aa16.22■□□□□ 0.19
CD44-224ENST00000526669 CAP2P40123 477 aa16.22■□□□□ 0.19
CD44-224ENST00000526669 TFAP4Q01664 338 aa16.22■□□□□ 0.19
CD44-224ENST00000526669 TRDNQ13061 729 aa16.22■□□□□ 0.19
CD44-224ENST00000526669 VGLL4Q14135 290 aa16.22■□□□□ 0.19
CD44-224ENST00000526669 ABCB5Q2M3G0 1257 aa16.22■□□□□ 0.19
CD44-224ENST00000526669 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.22■□□□□ 0.19
CD44-224ENST00000526669 CHST3Q7LGC8 479 aa16.22■□□□□ 0.19
CD44-224ENST00000526669 RALYLQ86SE5 291 aaKnown RBP16.22■□□□□ 0.19
CD44-224ENST00000526669 KCNB2Q92953 911 aa16.22■□□□□ 0.19
CD44-224ENST00000526669 JAKMIP1Q96N16 626 aaKnown RBP16.22■□□□□ 0.19
CD44-224ENST00000526669 ZKSCAN3Q9BRR0 538 aa16.22■□□□□ 0.19
CD44-224ENST00000526669 ZNF287Q9HBT7 754 aa16.22■□□□□ 0.19
CD44-224ENST00000526669 ZBTB21Q9ULJ3 1066 aa16.22■□□□□ 0.19
CD44-224ENST00000526669 TSPY3P0CV98 308 aa16.21■□□□□ 0.19
CD44-224ENST00000526669 TSPY8P0CW00 308 aa16.21■□□□□ 0.19
CD44-224ENST00000526669 HUNKP57058 714 aa16.21■□□□□ 0.19
CD44-224ENST00000526669 SEPT2Q15019 361 aa16.21■□□□□ 0.19
CD44-224ENST00000526669 RAB3GAP1Q15042 981 aa16.21■□□□□ 0.19
CD44-224ENST00000526669 MAP3K11Q16584 847 aa16.21■□□□□ 0.19
CD44-224ENST00000526669 CYB5R4Q7L1T6 521 aa16.21■□□□□ 0.19
CD44-224ENST00000526669 SCYL3Q8IZE3 742 aa16.21■□□□□ 0.19
CD44-224ENST00000526669 NCOA7Q8NI08 942 aa16.21■□□□□ 0.19
CD44-224ENST00000526669 KRT23Q9C075 422 aa16.21■□□□□ 0.19
CD44-224ENST00000526669 CNNM2Q9H8M5 875 aa16.21■□□□□ 0.19
CD44-224ENST00000526669 CABP5Q9NP86 173 aa16.21■□□□□ 0.19
CD44-224ENST00000526669 CSADQ9Y600 493 aa16.21■□□□□ 0.19
CD44-224ENST00000526669 SNCAIPQ9Y6H5 919 aa16.21■□□□□ 0.19
CD44-224ENST00000526669 BAZ2BQ9UIF8 2168 aaKnown RBP16.2■□□□□ 0.18
CD44-224ENST00000526669 TMEM88BA6NKF7 163 aa16.2■□□□□ 0.18
CD44-224ENST00000526669 NMT2O60551 498 aa16.2■□□□□ 0.18
CD44-224ENST00000526669 CTNND1O60716 968 aaKnown RBP16.2■□□□□ 0.18
CD44-224ENST00000526669 GUCY1A2P33402 732 aa16.2■□□□□ 0.18
CD44-224ENST00000526669 MB21D2Q8IYB1 491 aaPredicted RBP16.2■□□□□ 0.18
CD44-224ENST00000526669 ANKRD13AQ8IZ07 590 aa16.2■□□□□ 0.18
CD44-224ENST00000526669 CNKSR2Q8WXI2 1034 aa16.2■□□□□ 0.18
CD44-224ENST00000526669 ESR2Q92731 530 aa16.2■□□□□ 0.18
CD44-224ENST00000526669 TCEANC2Q96MN5 208 aa16.2■□□□□ 0.18
CD44-224ENST00000526669 NEK1Q96PY6 1258 aa16.2■□□□□ 0.18
CD44-224ENST00000526669 LRRC2Q9BYS8 371 aa16.2■□□□□ 0.18
CD44-224ENST00000526669 ABT1Q9ULW3 272 aaKnown RBP16.2■□□□□ 0.18
CD44-224ENST00000526669 PARP14Q460N5 1801 aa16.19■□□□□ 0.18
CD44-224ENST00000526669 LOC285556D6RIA3 1793 aa16.19■□□□□ 0.18
CD44-224ENST00000526669 PLIN4Q96Q06 1357 aa16.19■□□□□ 0.18
CD44-224ENST00000526669 PCP11498 1178 aaKnown RBP16.19■□□□□ 0.18
CD44-224ENST00000526669 CASTP20810 708 aaKnown RBP16.19■□□□□ 0.18
CD44-224ENST00000526669 ANTXR2P58335 489 aa16.19■□□□□ 0.18
CD44-224ENST00000526669 FKBP1BP68106 108 aa16.19■□□□□ 0.18
CD44-224ENST00000526669 ATP2B2Q01814 1243 aa16.19■□□□□ 0.18
CD44-224ENST00000526669 KRT32Q14532 448 aa16.19■□□□□ 0.18
CD44-224ENST00000526669 TSGA10IPQ3SY00 556 aa16.19■□□□□ 0.18
CD44-224ENST00000526669 NOL9Q5SY16 702 aaKnown RBP16.19■□□□□ 0.18
CD44-224ENST00000526669 LDLRAD1Q5T700 205 aa16.19■□□□□ 0.18
CD44-224ENST00000526669 NEDD1Q8NHV4 660 aa16.19■□□□□ 0.18
CD44-224ENST00000526669 CCDC17Q96LX7 622 aa16.19■□□□□ 0.18
CD44-224ENST00000526669 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.19■□□□□ 0.18
CD44-224ENST00000526669 PICK1Q9NRD5 415 aa16.19■□□□□ 0.18
CD44-224ENST00000526669 ZSWIM5Q9P217 1185 aa16.19■□□□□ 0.18
CD44-224ENST00000526669 ASNSP08243 561 aa16.18■□□□□ 0.18
CD44-224ENST00000526669 APLP1P51693 650 aa16.18■□□□□ 0.18
CD44-224ENST00000526669 MKRN3Q13064 507 aaKnown RBP16.18■□□□□ 0.18
CD44-224ENST00000526669 TMEM179Q6ZVK1 233 aa16.18■□□□□ 0.18
CD44-224ENST00000526669 TBC1D32Q96NH3 1257 aa16.18■□□□□ 0.18
CD44-224ENST00000526669 TAOK2Q9UL54 1235 aa16.18■□□□□ 0.18
CD44-224ENST00000526669 TLL2Q9Y6L7 1015 aa16.18■□□□□ 0.18
CD44-224ENST00000526669 PRC1O43663 620 aa16.17■□□□□ 0.18
CD44-224ENST00000526669 PTPRAP18433 802 aa16.17■□□□□ 0.18
CD44-224ENST00000526669 HTRA3P83110 453 aa16.17■□□□□ 0.18
CD44-224ENST00000526669 ICA1Q05084 483 aa16.17■□□□□ 0.18
CD44-224ENST00000526669 BLOC1S2Q6QNY1 142 aa16.17■□□□□ 0.18
CD44-224ENST00000526669 PAXIP1Q6ZW49 1069 aaPredicted RBP16.17■□□□□ 0.18
CD44-224ENST00000526669 SAPCD2Q86UD0 394 aa16.17■□□□□ 0.18
CD44-224ENST00000526669 SLC10A4Q96EP9 437 aa16.17■□□□□ 0.18
CD44-224ENST00000526669 OTUD5Q96G74 571 aa16.17■□□□□ 0.18
CD44-224ENST00000526669 CEP95Q96GE4 821 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms