RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 ALDH1L2Q3SY69 923 aa8.65□□□□□ -1.02
HDAC3-216ENST00000523088 PREPLQ4J6C6 727 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-216ENST00000523088 CCDC158Q5M9N0 1113 aa8.65□□□□□ -1.02
HDAC3-216ENST00000523088 SDCCAG8Q86SQ7 713 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-216ENST00000523088 MYLK4Q86YV6 388 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-216ENST00000523088 ZNF34Q8IZ26 560 aa8.65□□□□□ -1.02
HDAC3-216ENST00000523088 KIAA1958Q8N8K9 716 aa8.65□□□□□ -1.02
HDAC3-216ENST00000523088 IL17RAQ96F46 866 aa8.65□□□□□ -1.02
HDAC3-216ENST00000523088 SPACA7Q96KW9 195 aa8.65□□□□□ -1.02
HDAC3-216ENST00000523088 UTP14AQ9BVJ6 771 aaKnown RBP8.65□□□□□ -1.02
HDAC3-216ENST00000523088 DDX21Q9NR30 783 aaKnown RBP eCLIP8.65□□□□□ -1.02
HDAC3-216ENST00000523088 DCAF16Q9NXF7 216 aa8.65□□□□□ -1.02
HDAC3-216ENST00000523088 DBF4Q9UBU7 674 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-216ENST00000523088 LAMB2P55268 1798 aa8.65□□□□□ -1.02
HDAC3-216ENST00000523088 SASH1O94885 1247 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 FGAP02671 866 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 TNNT1P13805 278 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 EIF2S2P20042 333 aaKnown RBP8.64□□□□□ -1.03
HDAC3-216ENST00000523088 PSMA3P25788 255 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 PIK3CAP42336 1068 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 GNAI1P63096 354 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 GRIK3Q13003 919 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 DHX8Q14562 1220 aaKnown RBP8.64□□□□□ -1.03
HDAC3-216ENST00000523088 TMC4Q7Z404 712 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 BRSK2Q8IWQ3 736 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 TRIM42Q8IWZ5 723 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 ARL6IP6Q8N6S5 226 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 MIPOL1Q8TD10 442 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 NACC2Q96BF6 587 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 VMP1Q96GC9 406 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 RBM17Q96I25 401 aaKnown RBP8.64□□□□□ -1.03
HDAC3-216ENST00000523088 NLRP3Q96P20 1036 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 GSDMAQ96QA5 445 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 CRAMP1Q96RY5 1269 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 VPS33BQ9H267 617 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 ZBTB3Q9H5J0 574 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 GINM1Q9NU53 330 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 SPATS2LQ9NUQ6 558 aaKnown RBP8.64□□□□□ -1.03
HDAC3-216ENST00000523088 IFT57Q9NWB7 429 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 HYPKQ9NX55 129 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 SPATA7Q9P0W8 599 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 MKL2Q9ULH7 1088 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 ADAMTS8Q9UP79 889 aa8.64□□□□□ -1.03
HDAC3-216ENST00000523088 ABCC12Q96J65 1359 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 ZSCAN9O15535 394 aaPredicted RBP8.63□□□□□ -1.03
HDAC3-216ENST00000523088 NASPP49321 788 aaPredicted RBP8.63□□□□□ -1.03
HDAC3-216ENST00000523088 SLC7A5Q01650 507 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 DBN1Q16643 649 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 CCDC144BQ3MJ40 725 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 SDE2Q6IQ49 451 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 TTLL7Q6ZT98 887 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 NYAP1Q6ZVC0 841 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 DAAM2Q86T65 1068 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 CCDC65Q8IXS2 484 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 CCDC144CPQ8IYA2 1237 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 C7orf43Q8WVR3 580 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 TCP11Q8WWU5 503 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 DHTKD1Q96HY7 919 aaPredicted RBP8.63□□□□□ -1.03
HDAC3-216ENST00000523088 DHRS1Q96LJ7 313 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 NACA2Q9H009 215 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 RRAGCQ9HB90 399 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 XPO7Q9UIA9 1087 aaKnown RBP8.63□□□□□ -1.03
HDAC3-216ENST00000523088 TRIM35Q9UPQ4 493 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 USTQ9Y2C2 406 aa8.63□□□□□ -1.03
HDAC3-216ENST00000523088 UBN2Q6ZU65 1347 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 SH3TC1Q8TE82 1336 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 FAM177BA6PVY3 158 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 SGSM2O43147 1006 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 PRC1O43663 620 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 NTSR2O95665 410 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 TPM1P09493 284 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 ENPP1P22413 925 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 GPTP24298 496 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 CCNCP24863 283 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 COX10Q12887 443 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 NOLC1Q14978 699 aaKnown RBP eCLIP8.62□□□□□ -1.03
HDAC3-216ENST00000523088 WTAPQ15007 396 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 PDIA6Q15084 440 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 PLEKHG6Q3KR16 790 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 SLC10A5Q5PT55 438 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 LRP10Q7Z4F1 713 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 PLPP6Q8IY26 295 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 CCDC24Q8N4L8 307 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 SUPT20HQ8NEM7 779 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 PLBD2Q8NHP8 589 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 GABPB2Q8TAK5 448 aaPredicted RBP8.62□□□□□ -1.03
HDAC3-216ENST00000523088 JDP2Q8WYK2 163 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 NAF1Q96HR8 494 aaKnown RBP8.62□□□□□ -1.03
HDAC3-216ENST00000523088 FAXDC2Q96IV6 333 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 L3MBTL3Q96JM7 780 aaPredicted RBP8.62□□□□□ -1.03
HDAC3-216ENST00000523088 FAM81BQ96LP2 452 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 GPCPD1Q9NPB8 672 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 A1CFQ9NQ94 594 aaKnown RBP8.62□□□□□ -1.03
HDAC3-216ENST00000523088 DIAPH3Q9NSV4 1193 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 TCEAL9Q9UHQ7 104 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 ITGB1BP2Q9UKP3 347 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 PRR12Q9ULL5 1215 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 SLC30A1Q9Y6M5 507 aa8.62□□□□□ -1.03
HDAC3-216ENST00000523088 DDX60Q8IY21 1712 aaKnown RBP8.61□□□□□ -1.03
HDAC3-216ENST00000523088 TMEM238LA0A1B0GVL6 79 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms